ribonuclease H protein At1g65750
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 65 - 154 | 4.4e-17 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 155 |
| AciI | CCGC | 2 cut(s) | 104, 155 |
| AclWI | GGATC | 2 cut(s) | 26, 39 |
| AcsI | RAATTY | 4 cut(s) | 58, 76, 345, 630 |
| AcuI | CTGAAG | 1 cut(s) | 690 |
| AgsI | TTSAA | 5 cut(s) | 82, 350, 455, 517, 714 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 596, 628 |
| AluBI | AGCT | 6 cut(s) | 54, 328, 404, 520, 563, 569 |
| AluI | AGCT | 6 cut(s) | 54, 328, 404, 520, 563, 569 |
| Alw26I | GTCTC | 1 cut(s) | 147 |
| AlwI | GGATC | 2 cut(s) | 26, 39 |
| ApeKI | GCWGC | 1 cut(s) | 692 |
| ApoI | RAATTY | 4 cut(s) | 58, 76, 345, 630 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 343, 375 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 132 |
| BamHI | GGATCC | 1 cut(s) | 31 |
| BbvI | GCAGC | 1 cut(s) | 704 |
| BclI | TGATCA | 1 cut(s) | 340 |
| BcoDI | GTCTC | 1 cut(s) | 147 |
| BfaI | CTAG | 3 cut(s) | 108, 311, 545 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 701 |
| BglII | AGATCT | 1 cut(s) | 664 |
| BisI | GCNGC | 2 cut(s) | 105, 693 |
| BlsI | GCNGC | 2 cut(s) | 106, 694 |
| BmiI | GGNNCC | 1 cut(s) | 33 |
| Bpu10I | CCTNAGC | 1 cut(s) | 405 |
| BpuEI | CTTGAG | 1 cut(s) | 241 |
| Bse1I | ACTGG | 2 cut(s) | 180, 652 |
| BseGI | GGATG | 1 cut(s) | 163 |
| BseMII | CTCAG | 1 cut(s) | 275 |
| BseNI | ACTGG | 2 cut(s) | 180, 652 |
| BseRI | GAGGAG | 1 cut(s) | 425 |
| BseXI | GCAGC | 1 cut(s) | 704 |
| BsgI | GTGCAG | 1 cut(s) | 409 |
| BsmAI | GTCTC | 1 cut(s) | 147 |
| Bsp143I | GATC | 3 cut(s) | 31, 340, 664 |
| BspACI | CCGC | 2 cut(s) | 104, 155 |
| BspCNI | CTCAG | 1 cut(s) | 274 |
| BspLI | GGNNCC | 1 cut(s) | 33 |
| BspPI | GGATC | 2 cut(s) | 26, 39 |
| BsrBI | CCGCTC | 1 cut(s) | 155 |
| BsrI | ACTGG | 2 cut(s) | 180, 652 |
| BssMI | GATC | 3 cut(s) | 31, 340, 664 |
| Bst4CI | ACNGT | 2 cut(s) | 459, 750 |
| Bst6I | CTCTTC | 3 cut(s) | 93, 262, 670 |
| BstDEI | CTNAG | 3 cut(s) | 261, 405, 524 |
| BstF5I | GGATG | 1 cut(s) | 163 |
| BstKTI | GATC | 3 cut(s) | 34, 343, 667 |
| BstMAI | GTCTC | 1 cut(s) | 147 |
| BstMBI | GATC | 3 cut(s) | 31, 340, 664 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 701 |
| BstV1I | GCAGC | 1 cut(s) | 704 |
| BstX2I | RGATCY | 2 cut(s) | 31, 664 |
| BstYI | RGATCY | 2 cut(s) | 31, 664 |
| BtsCI | GGATG | 1 cut(s) | 163 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 9, 44, 443, 478 |
| DdeI | CTNAG | 3 cut(s) | 261, 405, 524 |
| DpnI | GATC | 3 cut(s) | 33, 342, 666 |
| DpnII | GATC | 3 cut(s) | 31, 340, 664 |
| Eam1104I | CTCTTC | 3 cut(s) | 93, 262, 670 |
| EarI | CTCTTC | 3 cut(s) | 93, 262, 670 |
| Eco57I | CTGAAG | 1 cut(s) | 690 |
| FaiI | YATR | 4 cut(s) | 645, 670, 746, 758 |
| FbaI | TGATCA | 1 cut(s) | 340 |
| Fnu4HI | GCNGC | 2 cut(s) | 105, 693 |
| FokI | GGATG | 1 cut(s) | 170 |
| Fsp4HI | GCNGC | 2 cut(s) | 105, 693 |
| FspBI | CTAG | 3 cut(s) | 108, 311, 545 |
| GluI | GCNGC | 2 cut(s) | 105, 693 |
| HincII | GTYRAC | 1 cut(s) | 421 |
| HindII | GTYRAC | 1 cut(s) | 421 |
| HindIII | AAGCTT | 2 cut(s) | 518, 567 |
| HinfI | GANTC | 1 cut(s) | 451 |
| HpaI | GTTAAC | 1 cut(s) | 421 |
| Hpy166II | GTNNAC | 2 cut(s) | 195, 421 |
| Hpy188I | TCNGA | 2 cut(s) | 264, 288 |
| Hpy188III | TCNNGA | 5 cut(s) | 70, 150, 186, 220, 476 |
| Hpy8I | GTNNAC | 2 cut(s) | 195, 421 |
| HpyAV | CCTTC | 4 cut(s) | 45, 159, 283, 706 |
| HpyCH4III | ACNGT | 2 cut(s) | 459, 750 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 201, 241, 390 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 701 |
| HpyF3I | CTNAG | 3 cut(s) | 261, 405, 524 |
| Ksp22I | TGATCA | 1 cut(s) | 340 |
| KspAI | GTTAAC | 1 cut(s) | 421 |
| Kzo9I | GATC | 3 cut(s) | 31, 340, 664 |
| LmnI | GCTCC | 1 cut(s) | 616 |
| LpnPI | CCDG | 9 cut(s) | 23, 40, 55, 161, 171, 461, 569, 633, 685 |
| Lsp1109I | GCAGC | 1 cut(s) | 704 |
| MaeI | CTAG | 3 cut(s) | 108, 311, 545 |
| MaeIII | GTNAC | 1 cut(s) | 620 |
| MalI | GATC | 3 cut(s) | 33, 342, 666 |
| MbiI | CCGCTC | 1 cut(s) | 155 |
| MboI | GATC | 3 cut(s) | 31, 340, 664 |
| MboII | GAAGA | 4 cut(s) | 110, 249, 425, 687 |
| MfeI | CAATTG | 1 cut(s) | 765 |
| MflI | RGATCY | 2 cut(s) | 31, 664 |
| MmeI | TCCRAC | 1 cut(s) | 594 |
| MnlI | CCTC | 9 cut(s) | 79, 94, 265, 294, 403, 472, 532, 549, 631 |
| MroXI | GAANNNNTTC | 1 cut(s) | 132 |
| MseI | TTAA | 2 cut(s) | 420, 723 |
| MunI | CAATTG | 1 cut(s) | 765 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 701 |
| NdeII | GATC | 3 cut(s) | 31, 340, 664 |
| NlaIV | GGNNCC | 1 cut(s) | 33 |
| PdmI | GAANNNNTTC | 1 cut(s) | 132 |
| PfeI | GAWTC | 1 cut(s) | 451 |
| PkrI | GCNGC | 2 cut(s) | 106, 694 |
| PspN4I | GGNNCC | 1 cut(s) | 33 |
| PsuI | RGATCY | 2 cut(s) | 31, 664 |
| SaqAI | TTAA | 2 cut(s) | 420, 723 |
| SatI | GCNGC | 2 cut(s) | 105, 693 |
| Sau3AI | GATC | 3 cut(s) | 31, 340, 664 |
| SmlI | CTYRAG | 1 cut(s) | 220 |
| SmoI | CTYRAG | 1 cut(s) | 220 |
| SsiI | CCGC | 2 cut(s) | 104, 155 |
| SspMI | CTAG | 3 cut(s) | 108, 311, 545 |
| TaaI | ACNGT | 2 cut(s) | 459, 750 |
| TauI | GCSGC | 1 cut(s) | 107 |
| TfiI | GAWTC | 1 cut(s) | 451 |
| Tru1I | TTAA | 2 cut(s) | 420, 723 |
| Tru9I | TTAA | 2 cut(s) | 420, 723 |
| TseI | GCWGC | 1 cut(s) | 692 |
| TspDTI | ATGAA | 1 cut(s) | 425 |
| XapI | RAATTY | 4 cut(s) | 58, 76, 345, 630 |
| XmnI | GAANNNNTTC | 1 cut(s) | 132 |
| XspI | CTAG | 3 cut(s) | 108, 311, 545 |