RchiOBHm_Chr7g0218191

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000842
Physical Location & Seq
Reverse (-)
36132175 .. 36133901
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19531

Sequence Viewer

Length: 861 bp
ATGGATTTCATCAATTTCGGCTCCTTAATCCATTCCATGAACAAAGCACATATTGTGCTGATTCCTAAGGTCCCTCACCCTGATCAGATTGGGCAGTTTCGACCAATTAGCCTGTGCAATTTCTCTTATAAGGTGTTGTCAAAGGTTTTGGCTAACCGGTTGAGATCCATCCTTCCTTCTCTTATTTCCTTTAATCAAGCTGCATTTGTTCATGACAGACAAATACAAGACAACATTATTGTAGCTCATGAGGTATTTCATTATCTTAAGAACAAGAGAAGTGGCATAGATTTTGATATGGGGTTAAAGATTGATATGAACAAAGCTTACGATCGTATTGAGTGGGATTTTCTTCAAGCTGTTATGCTTAAGATGGGATTTGTTGCAAGTTGGGTTAACTTGATAATGAAATGCTTGAATACAGTTTCATTCTCTGTTTTACTAAATGGAAAACCAGGGCCTACTTTCTCTCCTTCACGGGGCTGGAGGCAGGGGGATCCTTTGTCCCCGTACTTATTCATTTTGGTTGCCGAAGTTTTAACTGCAATGATTAATAGGGCTTGCTTGAATCACTCCCCAGTTGGTGTTCAAATGGGTGCAGAAGGTCCCTCGATTTCACATCTATTGTTTGCTGATGATTCCCTCTTCTTTGTGAAGGCTTCTGTAGAAAATTGTCAATCAATGATGACCATTCTGACTAACTACTGTACTGCATCAGGTCAGCGAGTCAATTTCAGCAAATCAAGTTTGTTTTTTAGTCTCAATACACCTCTAGAGCTTCAATTGAACATCAGCGATATTTTGGGTGTTCATGAATCAGATGATCCTGGCAAGTATCTTGGACTCCCTACTTTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

286

Amino Acids

32.07

Weight (kDa)

8.25

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 25 - 282 5.3e-32 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AclWI GGATC 4 cut(s) 159, 491, 504, 818
AfaI GTAC 2 cut(s) 512, 709
AfiI CCNNNNNNNGG 1 cut(s) 479
AflII CTTAAG 2 cut(s) 266, 368
AgeI ACCGGT 1 cut(s) 156
AgsI TTSAA 6 cut(s) 356, 418, 568, 590, 782, 787
AjnI CCWGG 2 cut(s) 454, 826
AluBI AGCT 5 cut(s) 200, 245, 326, 359, 778
AluI AGCT 5 cut(s) 200, 245, 326, 359, 778
Alw26I GTCTC 1 cut(s) 764
AlwI GGATC 4 cut(s) 159, 491, 504, 818
AoxI GGCC 1 cut(s) 458
ApeKI GCWGC 1 cut(s) 200
AseI ATTAAT 1 cut(s) 552
AsiGI ACCGGT 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 70, 458, 605
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 2 cut(s) 70, 605
AxyI CCTNAGG 1 cut(s) 66
BamHI GGATCC 1 cut(s) 496
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 176, 367
BciT130I CCWGG 2 cut(s) 456, 828
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 764
BfaI CTAG 1 cut(s) 773
BfmI CTRYAG 1 cut(s) 663
BfrI CTTAAG 2 cut(s) 266, 368
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 456, 828
Bme18I GGWCC 2 cut(s) 70, 605
BmgT120I GGNCC 3 cut(s) 70, 458, 605
BmiI GGNNCC 4 cut(s) 22, 72, 498, 607
BmrFI CCNGG 2 cut(s) 456, 828
BmrI ACTGGG 1 cut(s) 572
BmsI GCATC 1 cut(s) 722
BmuI ACTGGG 1 cut(s) 572
BpmI CTGGAG 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 455
BsaWI WCCGGW 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse118I RCCGGY 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 578
Bse21I CCTNAGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 552
BseBI CCWGG 2 cut(s) 456, 828
BseDI CCNNGG 1 cut(s) 455
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMI GCAATG 1 cut(s) 552
BseNI ACTGG 1 cut(s) 578
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 618
Bsh1285I CGRYCG 1 cut(s) 334
BshFI GGCC 1 cut(s) 460
BshTI ACCGGT 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 334
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 3 cut(s) 56, 490, 591
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 1 cut(s) 764
BsmFI GGGAC 3 cut(s) 56, 490, 591
BsnI GGCC 1 cut(s) 460
Bsp143I GATC 5 cut(s) 82, 164, 331, 496, 823
BspANI GGCC 1 cut(s) 460
BspHI TCATGA 3 cut(s) 211, 247, 811
BspLI GGNNCC 4 cut(s) 22, 72, 498, 607
BspPI GGATC 4 cut(s) 159, 491, 504, 818
BspTI CTTAAG 2 cut(s) 266, 368
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 156
BsrI ACTGG 1 cut(s) 578
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 455
BssMI GATC 5 cut(s) 82, 164, 331, 496, 823
Bst2UI CCWGG 2 cut(s) 456, 828
Bst4CI ACNGT 2 cut(s) 424, 707
Bst6I CTCTTC 1 cut(s) 650
BstAFI CTTAAG 2 cut(s) 266, 368
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 5 cut(s) 85, 167, 334, 499, 826
BstMAI GTCTC 1 cut(s) 764
BstMBI GATC 5 cut(s) 82, 164, 331, 496, 823
BstMCI CGRYCG 1 cut(s) 334
BstNI CCWGG 2 cut(s) 456, 828
BstSCI CCNGG 2 cut(s) 454, 826
BstSFI CTRYAG 1 cut(s) 663
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 2 cut(s) 164, 496
BstYI RGATCY 2 cut(s) 164, 496
Bsu36I CCTNAGG 1 cut(s) 66
BsuRI GGCC 1 cut(s) 460
BtsCI GGATG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 562
CciI TCATGA 3 cut(s) 211, 247, 811
Cfr10I RCCGGY 1 cut(s) 156
Cfr13I GGNCC 3 cut(s) 70, 458, 605
Csp6I GTAC 2 cut(s) 511, 708
CspAI ACCGGT 1 cut(s) 156
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviAII CATG 4 cut(s) 37, 212, 248, 812
CviQI GTAC 2 cut(s) 511, 708
DdeI CTNAG 1 cut(s) 66
DpnI GATC 5 cut(s) 84, 166, 333, 498, 825
DpnII GATC 5 cut(s) 82, 164, 331, 496, 823
Eam1104I CTCTTC 1 cut(s) 650
EarI CTCTTC 1 cut(s) 650
Eco47I GGWCC 2 cut(s) 70, 605
Eco81I CCTNAGG 1 cut(s) 66
EcoO109I RGGNCCY 3 cut(s) 70, 458, 605
EcoRII CCWGG 2 cut(s) 454, 826
FaeI CATG 4 cut(s) 40, 215, 251, 815
FaqI GGGAC 3 cut(s) 56, 490, 591
FatI CATG 4 cut(s) 36, 211, 247, 811
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 773
GluI GCNGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 505
HaeIII GGCC 1 cut(s) 460
HapII CCGG 1 cut(s) 157
Hin1II CATG 4 cut(s) 40, 215, 251, 815
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 6 cut(s) 61, 568, 638, 726, 815, 843
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 1 cut(s) 157
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 3 cut(s) 87, 696, 820
Hpy188III TCNNGA 4 cut(s) 212, 248, 773, 812
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 5 cut(s) 182, 186, 483, 596, 649
HpyCH4III ACNGT 2 cut(s) 424, 707
HpyCH4V TGCA 6 cut(s) 117, 203, 386, 545, 599, 713
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 4 cut(s) 40, 215, 251, 815
Ksp22I TGATCA 1 cut(s) 82
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 5 cut(s) 82, 164, 331, 496, 823
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 722
MaeI CTAG 1 cut(s) 773
MalI GATC 5 cut(s) 84, 166, 333, 498, 825
MboI GATC 5 cut(s) 82, 164, 331, 496, 823
MboII GAAGA 2 cut(s) 344, 637
MfeI CAATTG 1 cut(s) 782
MflI RGATCY 2 cut(s) 164, 496
MluCI AATT 6 cut(s) 13, 105, 118, 670, 730, 782
MlyI GAGTC 2 cut(s) 735, 837
MnlI CCTC 6 cut(s) 84, 244, 480, 619, 653, 780
MseI TTAA 8 cut(s) 26, 192, 267, 305, 369, 396, 539, 552
MspCI CTTAAG 2 cut(s) 266, 368
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 2 cut(s) 456, 828
MunI CAATTG 1 cut(s) 782
MvaI CCWGG 2 cut(s) 456, 828
NdeII GATC 5 cut(s) 82, 164, 331, 496, 823
NlaIII CATG 4 cut(s) 40, 215, 251, 815
NlaIV GGNNCC 4 cut(s) 22, 72, 498, 607
PagI TCATGA 3 cut(s) 211, 247, 811
PfeI GAWTC 4 cut(s) 61, 568, 638, 815
PinAI ACCGGT 1 cut(s) 156
PkrI GCNGC 1 cut(s) 202
Ple19I CGATCG 1 cut(s) 334
PleI GAGTC 2 cut(s) 734, 837
PpsI GAGTC 2 cut(s) 734, 837
PpuMI RGGWCCY 2 cut(s) 70, 605
PshBI ATTAAT 1 cut(s) 552
PsiI TTATAA 1 cut(s) 129
Psp5II RGGWCCY 2 cut(s) 70, 605
Psp6I CCWGG 2 cut(s) 454, 826
PspGI CCWGG 2 cut(s) 454, 826
PspN4I GGNNCC 4 cut(s) 22, 72, 498, 607
PspPI GGNCC 3 cut(s) 70, 458, 605
PspPPI RGGWCCY 2 cut(s) 70, 605
PsrI GAACNNNNNNTAC 2 cut(s) 311, 343
PsuI RGATCY 2 cut(s) 164, 496
PvuI CGATCG 1 cut(s) 334
RsaI GTAC 2 cut(s) 512, 709
RsaNI GTAC 2 cut(s) 511, 708
SaqAI TTAA 8 cut(s) 26, 192, 267, 305, 369, 396, 539, 552
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 5 cut(s) 82, 164, 331, 496, 823
Sau96I GGNCC 3 cut(s) 70, 458, 605
SchI GAGTC 2 cut(s) 735, 837
ScrFI CCNGG 2 cut(s) 456, 828
SfaNI GCATC 1 cut(s) 722
SfcI CTRYAG 1 cut(s) 663
SinI GGWCC 2 cut(s) 70, 605
SmlI CTYRAG 2 cut(s) 266, 368
SmoI CTYRAG 2 cut(s) 266, 368
Sse9I AATT 6 cut(s) 13, 105, 118, 670, 730, 782
SspMI CTAG 1 cut(s) 773
StyD4I CCNGG 2 cut(s) 454, 826
TaaI ACNGT 2 cut(s) 424, 707
TaqI TCGA 2 cut(s) 100, 611
TasI AATT 6 cut(s) 13, 105, 118, 670, 730, 782
TatI WGTACW 1 cut(s) 707
TfiI GAWTC 4 cut(s) 61, 568, 638, 815
Tru1I TTAA 8 cut(s) 26, 192, 267, 305, 369, 396, 539, 552
Tru9I TTAA 8 cut(s) 26, 192, 267, 305, 369, 396, 539, 552
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 9 cut(s) 53, 200, 248, 332, 417, 422, 508, 800, 828
Vha464I CTTAAG 2 cut(s) 266, 368
VpaK11BI GGWCC 2 cut(s) 70, 605
VspI ATTAAT 1 cut(s) 552
XbaI TCTAGA 1 cut(s) 772
XspI CTAG 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.