Rroxscaffold_4G00320800

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000842
Physical Location & Seq
Forward (+)
49766475 .. 49782834
16360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320800.1

Sequence Viewer

Length: 297 bp
ATGGGTAATAATATGCATACACCCCCAATTGCTTGGTCTCATATCTGCATTCTAAAGAATAAAGGAGACCTTGGAGTTAGATCTAGCTTTGTGTTTAATAAAGCGGCCCTAGCTAAATTGGGTTGGAAGGTGTTAACTAAACCTCTAAATTGGTATATTAAAATTGTTAGTGCTAAATATCTTCGAAAAACCTCTTTTTTCATTGCTAAAAAGACTAGATGCTTTTCTATGGCTTGGAAATCTAGAAACTCTAGCTTTAAGAGTAGGACCTCATGCAACTCTAGTTCATGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

98

Amino Acids

11.22

Weight (kDa)

10.76

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AluBI AGCT 3 cut(s) 87, 113, 255
AluI AGCT 3 cut(s) 87, 113, 255
Alw26I GTCTC 2 cut(s) 42, 60
AoxI GGCC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 106, 267
AsuII TTCGAA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 42, 60
BfaI CTAG 6 cut(s) 84, 110, 216, 243, 252, 282
BglII AGATCT 1 cut(s) 80
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 2 cut(s) 106, 267
BmsI GCATC 1 cut(s) 209
Bpu14I TTCGAA 1 cut(s) 184
BsaI GGTCTC 2 cut(s) 42, 60
BsaJI CCNNGG 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 201
BshFI GGCC 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 42, 60
BsmI GAATGC 1 cut(s) 48
BsnI GGCC 1 cut(s) 107
Bso31I GGTCTC 2 cut(s) 42, 60
Bsp119I TTCGAA 1 cut(s) 184
Bsp143I GATC 1 cut(s) 80
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 107
BspT104I TTCGAA 1 cut(s) 184
BspTNI GGTCTC 2 cut(s) 42, 60
BsrDI GCAATG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 70
BstBI TTCGAA 1 cut(s) 184
BstKTI GATC 1 cut(s) 83
BstMAI GTCTC 2 cut(s) 42, 60
BstMBI GATC 1 cut(s) 80
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 80
BstXI CCANNNNNNTGG 1 cut(s) 33
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 106, 267
CviAII CATG 2 cut(s) 273, 288
CviJI RGCY 5 cut(s) 87, 107, 113, 233, 255
CviKI_1 RGCY 5 cut(s) 87, 107, 113, 233, 255
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 70
Eco31I GGTCTC 2 cut(s) 42, 60
Eco47I GGWCC 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 2 cut(s) 276, 291
FaiI YATR 8 cut(s) 14, 18, 42, 156, 230, 274, 289, 295
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FatI CATG 2 cut(s) 272, 287
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 6 cut(s) 84, 110, 216, 243, 252, 282
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 107
Hin1II CATG 2 cut(s) 276, 291
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HpaI GTTAAC 1 cut(s) 135
Hpy166II GTNNAC 1 cut(s) 135
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 16, 48, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
Hsp92II CATG 2 cut(s) 276, 291
KspAI GTTAAC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 80
LweI GCATC 1 cut(s) 209
MaeI CTAG 6 cut(s) 84, 110, 216, 243, 252, 282
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MboII GAAGA 1 cut(s) 173
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 80
MluCI AATT 4 cut(s) 27, 116, 148, 162
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 3 cut(s) 153, 202, 280
Mph1103I ATGCAT 1 cut(s) 18
MseI TTAA 4 cut(s) 96, 134, 159, 258
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 1 cut(s) 80
NlaIII CATG 2 cut(s) 276, 291
NsiI ATGCAT 1 cut(s) 18
NspV TTCGAA 1 cut(s) 184
PctI GAATGC 1 cut(s) 48
PkrI GCNGC 1 cut(s) 106
PpuMI RGGWCCY 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 267
PspPI GGNCC 2 cut(s) 106, 267
PspPPI RGGWCCY 1 cut(s) 267
PsuI RGATCY 1 cut(s) 80
SaqAI TTAA 4 cut(s) 96, 134, 159, 258
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 2 cut(s) 106, 267
SetI ASST 8 cut(s) 72, 89, 115, 132, 145, 194, 257, 272
SfaNI GCATC 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 184
SgeI CNNG 9 cut(s) 45, 83, 96, 122, 228, 246, 255, 264, 285
SinI GGWCC 1 cut(s) 267
Sse9I AATT 4 cut(s) 27, 116, 148, 162
SsiI CCGC 1 cut(s) 104
SspMI CTAG 6 cut(s) 84, 110, 216, 243, 252, 282
StyI CCWWGG 1 cut(s) 70
TaqI TCGA 1 cut(s) 184
TasI AATT 4 cut(s) 27, 116, 148, 162
TauI GCSGC 1 cut(s) 107
Tru1I TTAA 4 cut(s) 96, 134, 159, 258
Tru9I TTAA 4 cut(s) 96, 134, 159, 258
TspDTI ATGAA 2 cut(s) 190, 276
VpaK11BI GGWCC 1 cut(s) 267
XbaI TCTAGA 1 cut(s) 242
XspI CTAG 6 cut(s) 84, 110, 216, 243, 252, 282
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.