Rh4BG196500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000842
Physical Location & Seq
Forward (+)
33879967 .. 33880218
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG196500.1

Sequence Viewer

Length: 252 bp
ATGAAGACCTTACCACCATCACCCCTCGCTTGCCAAGACACCACCGCCGTCGGGACACCACTGTCCCTCCTACCCAGTCGCTCCTCCAACCCAGATCTTGTGCGCAGCTCGAGACCAGAGAAGAATCTAGGCTCCAAAGCCACACCAAAGTCTTCTGGATCTGCTACAACAATCGAAACTAGTGCCCGATGGAAACCACTATCCGATCTCAGGTTCTCCCTCGCCGACAAGTCAGCTTCCCTCCAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.78

Weight (kDa)

10.01

Isoelectric Point (pI)

70.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
Acc16I TGCGCA 1 cut(s) 104
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 166
AfiI CCNNNNNNNGG 2 cut(s) 51, 210
AhlI ACTAGT 1 cut(s) 179
AluBI AGCT 2 cut(s) 108, 236
AluI AGCT 2 cut(s) 108, 236
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 1 cut(s) 166
Ama87I CYCGRG 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 12
AvaI CYCGRG 1 cut(s) 109
BaeGI GKGCMC 1 cut(s) 187
BbsI GAAGAC 2 cut(s) 11, 144
BbvI GCAGC 1 cut(s) 117
BccI CCATC 2 cut(s) 25, 183
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BcoDI GTCTC 1 cut(s) 106
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 2 cut(s) 128, 180
BglII AGATCT 1 cut(s) 94
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 69
BpiI GAAGAC 2 cut(s) 11, 144
BsaI GGTCTC 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 210
Bse1I ACTGG 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 51, 210
BseMII CTCAG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 73
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 109
BslFI GGGAC 2 cut(s) 49, 67
BslI CCNNNNNNNGG 2 cut(s) 51, 210
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 49, 67
Bso31I GGTCTC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 3 cut(s) 94, 158, 205
BspACI CCGC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 133
BspPI GGATC 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 106
BsrI ACTGG 1 cut(s) 75
BssMI GATC 3 cut(s) 94, 158, 205
Bst4CI ACNGT 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 209
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 97, 161, 208
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 3 cut(s) 94, 158, 205
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 117
BstV2I GAAGAC 2 cut(s) 11, 144
BstX2I RGATCY 2 cut(s) 94, 158
BstYI RGATCY 2 cut(s) 94, 158
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 31
CfoI GCGC 1 cut(s) 105
CviJI RGCY 4 cut(s) 108, 132, 140, 236
CviKI_1 RGCY 4 cut(s) 108, 132, 140, 236
DdeI CTNAG 1 cut(s) 209
DpnI GATC 3 cut(s) 96, 160, 207
DpnII GATC 3 cut(s) 94, 158, 205
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
Eco31I GGTCTC 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 109
FaqI GGGAC 2 cut(s) 49, 67
Fnu4HI GCNGC 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 106
FspBI CTAG 2 cut(s) 128, 180
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 106
HhaI GCGC 1 cut(s) 105
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 124
HphI GGTGA 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 3 cut(s) 52, 111, 156
Hpy99I CGWCG 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 209
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 3 cut(s) 94, 158, 205
LmnI GCTCC 2 cut(s) 86, 137
LpnPI CCDG 5 cut(s) 88, 105, 129, 141, 196
Lsp1109I GCAGC 1 cut(s) 117
MaeI CTAG 2 cut(s) 128, 180
MalI GATC 3 cut(s) 96, 160, 207
MboI GATC 3 cut(s) 94, 158, 205
MboII GAAGA 3 cut(s) 16, 133, 144
MflI RGATCY 2 cut(s) 94, 158
MhlI GDGCHC 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 5 cut(s) 35, 77, 94, 230, 251
NdeII GATC 3 cut(s) 94, 158, 205
NlaIV GGNNCC 1 cut(s) 133
NsbI TGCGCA 1 cut(s) 104
PaeR7I CTCGAG 1 cut(s) 109
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 133
PsuI RGATCY 2 cut(s) 94, 158
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 3 cut(s) 94, 158, 205
SduI GDGCHC 1 cut(s) 187
SetI ASST 4 cut(s) 11, 110, 215, 238
Sfr274I CTCGAG 1 cut(s) 109
SlaI CTCGAG 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
SpeI ACTAGT 1 cut(s) 179
SsiI CCGC 1 cut(s) 45
SspMI CTAG 2 cut(s) 128, 180
TaaI ACNGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 110, 174
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 1 cut(s) 66
TseI GCWGC 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 66
XhoI CTCGAG 1 cut(s) 109
XspI CTAG 2 cut(s) 128, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.