Prupe.1G572100_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000842
Physical Location & Seq
Forward (+)
46626976 .. 46627842
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G572100.1

Sequence Viewer

Length: 867 bp
ATGGGAATAGGGTCAGATTTTCGGGAGGATAGTTGGGTGAGGGAGGGGGTGTTGAAGGACATTTTTCCGCGCTTGTTTGCGCTGTCTTCAAAGCATACCTTAAGCATTAACTGTTTTATGGATACTCAGGTTTTTCTTCATAATTGGGACTTTGGGTTTAGGAGAAATCTGAATGAAAGGGAGACTGCCGAGGTGATCAAGTTGCTGGAAACTCTGGAAGGTATCAGATTGTGTGCTTCTAAAAGGGATAGGAGAAGGTGGGATCTAGAGGATTCGGGATCTTTCACATGCAAGTCCTTTCAGTCCTTTTTGCGCAACAAGGGGAGGGCAGAGACCTTTCCTCCTTTCTCTCTTGTGTGGAAGGCCAAGTCTCCCCCTAAGGTCAAAGTCTTTGTTTGGTTGGTGGCGCTTGGGAAAGTTAACACATCGGATCTTGTCCAAAGGAAAAGACCCTTTATGTACCTGTCTCCTCAATGGTGTGTGTTATGTAAGCTTTGTGAGGAGAGTGTGGACCACCTTTTCTTACATTGCCCTTTTTCCTTGAGTCTTTGGTGGCTCTTGTGGAGGGAGGTTGGGACTGTTTGGGTGATTCCGAAAGGGTGCTCTGATTTTCTTTGTTCTGACTTTGTGGTTTGGGGATTGGGGAAGCTCACTTCAACCTTATGGGGCTGTTTGGTCCACTCTGTTTTCTGGATCATTTGGATGGAGCGTAATAGGAGAATCTTTGAAGACTATAAGGGAGTGAGAGTGAGTGATCTTTGGGATAGAGTTAAGTACTGGGCAGCTTTTTGGGCTTCTGTTACAAAAGATTTTAAAGACTACTCTTATTCCACAATTATGAGGGATATGGCAGCTGCGGTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 zf-RVT

Protein Analysis

289

Amino Acids

33.97

Weight (kDa)

9.15

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 314
AccII CGCG 1 cut(s) 70
AciI CCGC 2 cut(s) 68, 857
AclWI GGATC 4 cut(s) 270, 286, 438, 701
AfaI GTAC 2 cut(s) 461, 776
AflII CTTAAG 1 cut(s) 100
AgsI TTSAA 4 cut(s) 55, 90, 657, 728
AluBI AGCT 4 cut(s) 493, 649, 785, 854
AluI AGCT 4 cut(s) 493, 649, 785, 854
Alw21I GWGCWC 1 cut(s) 605
Alw26I GTCTC 4 cut(s) 176, 326, 375, 471
AlwI GGATC 4 cut(s) 270, 286, 438, 701
AoxI GGCC 1 cut(s) 363
ApeKI GCWGC 3 cut(s) 782, 851, 854
AspLEI GCGC 4 cut(s) 72, 82, 315, 409
AspS9I GGNCC 2 cut(s) 511, 676
AsuHPI GGTGA 3 cut(s) 49, 205, 598
AvaII GGWCC 2 cut(s) 511, 676
AxyI CCTNAGG 1 cut(s) 378
BaeI ACNNNNGTAYC 2 cut(s) 114, 147
BbsI GAAGAC 2 cut(s) 78, 735
Bbv12I GWGCWC 1 cut(s) 605
BbvI GCAGC 3 cut(s) 794, 841, 863
BccI CCATC 1 cut(s) 697
BciVI GTATCC 1 cut(s) 115
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 4 cut(s) 176, 326, 375, 471
BfaI CTAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 410
BfrI CTTAAG 1 cut(s) 100
BfuI GTATCC 1 cut(s) 115
BisI GCNGC 3 cut(s) 783, 852, 855
BlsI GCNGC 3 cut(s) 784, 853, 856
BmcAI AGTACT 1 cut(s) 776
Bme18I GGWCC 2 cut(s) 511, 676
BmgT120I GGNCC 2 cut(s) 511, 676
BmrI ACTGGG 1 cut(s) 787
BmuI ACTGGG 1 cut(s) 787
BpiI GAAGAC 2 cut(s) 78, 735
BpuEI CTTGAG 1 cut(s) 562
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 189
BsaXI ACNNNNNCTCC 6 cut(s) 35, 65, 325, 355, 732, 762
Bse1I ACTGG 1 cut(s) 782
Bse21I CCTNAGG 1 cut(s) 378
Bse3DI GCAATG 1 cut(s) 526
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 708
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 782
BseRI GAGGAG 2 cut(s) 459, 515
BseXI GCAGC 3 cut(s) 794, 841, 863
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 605
BslFI GGGAC 2 cut(s) 161, 589
BsmAI GTCTC 4 cut(s) 176, 326, 375, 471
BsmFI GGGAC 2 cut(s) 161, 589
BsnI GGCC 1 cut(s) 365
Bso31I GGTCTC 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 605
Bsp143I GATC 6 cut(s) 195, 262, 278, 430, 693, 754
BspACI CCGC 2 cut(s) 68, 857
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 1 cut(s) 139
BspFNI CGCG 1 cut(s) 70
BspPI GGATC 4 cut(s) 270, 286, 438, 701
BspTI CTTAAG 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 526
BsrI ACTGG 1 cut(s) 782
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 6 cut(s) 195, 262, 278, 430, 693, 754
Bst4CI ACNGT 2 cut(s) 113, 580
BstAFI CTTAAG 1 cut(s) 100
BstDEI CTNAG 2 cut(s) 126, 378
BstF5I GGATG 1 cut(s) 708
BstFNI CGCG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 4 cut(s) 72, 82, 315, 409
BstKTI GATC 6 cut(s) 198, 265, 281, 433, 696, 757
BstMAI GTCTC 4 cut(s) 176, 326, 375, 471
BstMBI GATC 6 cut(s) 195, 262, 278, 430, 693, 754
BstMWI GCNNNNNNNGC 1 cut(s) 791
BstNSI RCATGY 1 cut(s) 291
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 3 cut(s) 794, 841, 863
BstV2I GAAGAC 2 cut(s) 78, 735
BstX2I RGATCY 3 cut(s) 262, 278, 430
BstYI RGATCY 3 cut(s) 262, 278, 430
Bsu36I CCTNAGG 1 cut(s) 378
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 365
BtsCI GGATG 1 cut(s) 708
CfoI GCGC 4 cut(s) 72, 82, 315, 409
Cfr13I GGNCC 2 cut(s) 511, 676
Csp6I GTAC 2 cut(s) 460, 775
CviAII CATG 1 cut(s) 288
CviJI RGCY 8 cut(s) 365, 493, 556, 649, 669, 785, 794, 854
CviKI_1 RGCY 8 cut(s) 365, 493, 556, 649, 669, 785, 794, 854
CviQI GTAC 2 cut(s) 460, 775
DdeI CTNAG 2 cut(s) 126, 378
DpnI GATC 6 cut(s) 197, 264, 280, 432, 695, 756
DpnII GATC 6 cut(s) 195, 262, 278, 430, 693, 754
DraI TTTAAA 1 cut(s) 814
Eco31I GGTCTC 1 cut(s) 326
Eco47I GGWCC 2 cut(s) 511, 676
Eco81I CCTNAGG 1 cut(s) 378
FaeI CATG 1 cut(s) 291
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 2 cut(s) 161, 589
FatI CATG 1 cut(s) 287
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 3 cut(s) 783, 852, 855
FokI GGATG 1 cut(s) 715
Fsp4HI GCNGC 3 cut(s) 783, 852, 855
FspBI CTAG 1 cut(s) 266
FspI TGCGCA 1 cut(s) 314
GlaI GCGC 4 cut(s) 71, 81, 314, 408
GluI GCNGC 3 cut(s) 783, 852, 855
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 1 cut(s) 365
HhaI GCGC 4 cut(s) 72, 82, 315, 409
Hin1II CATG 1 cut(s) 291
Hin6I GCGC 4 cut(s) 70, 80, 313, 407
HinP1I GCGC 4 cut(s) 70, 80, 313, 407
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 4 cut(s) 272, 544, 589, 720
HpaI GTTAAC 1 cut(s) 421
HphI GGTGA 3 cut(s) 49, 205, 598
Hpy166II GTNNAC 3 cut(s) 421, 511, 679
Hpy188I TCNGA 7 cut(s) 16, 171, 227, 430, 594, 607, 622
Hpy188III TCNNGA 5 cut(s) 23, 215, 266, 276, 691
Hpy8I GTNNAC 3 cut(s) 421, 511, 679
HpyAV CCTTC 4 cut(s) 49, 212, 249, 355
HpyCH4III ACNGT 2 cut(s) 113, 580
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 791
HpyF3I CTNAG 2 cut(s) 126, 378
Hsp92II CATG 1 cut(s) 291
HspAI GCGC 4 cut(s) 70, 80, 313, 407
Ksp22I TGATCA 1 cut(s) 195
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 6 cut(s) 195, 262, 278, 430, 693, 754
LmnI GCTCC 1 cut(s) 706
LpnPI CCDG 6 cut(s) 113, 191, 200, 476, 676, 763
Lsp1109I GCAGC 3 cut(s) 794, 841, 863
MaeI CTAG 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 799
MalI GATC 6 cut(s) 197, 264, 280, 432, 695, 756
MboI GATC 6 cut(s) 195, 262, 278, 430, 693, 754
MboII GAAGA 3 cut(s) 78, 128, 740
MflI RGATCY 3 cut(s) 262, 278, 430
MhlI GDGCHC 1 cut(s) 605
MluCI AATT 2 cut(s) 142, 834
MlyI GAGTC 1 cut(s) 553
MseI TTAA 6 cut(s) 101, 108, 420, 771, 813, 861
MslI CAYNNNNRTG 2 cut(s) 701, 836
MspA1I CMGCKG 1 cut(s) 854
MspCI CTTAAG 1 cut(s) 100
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 791
NdeII GATC 6 cut(s) 195, 262, 278, 430, 693, 754
NlaIII CATG 1 cut(s) 291
NmeAIII GCCGAG 1 cut(s) 214
NsbI TGCGCA 1 cut(s) 314
NspI RCATGY 1 cut(s) 291
PfeI GAWTC 3 cut(s) 272, 589, 720
PkrI GCNGC 3 cut(s) 784, 853, 856
PleI GAGTC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 552
PspPI GGNCC 2 cut(s) 511, 676
PsuI RGATCY 3 cut(s) 262, 278, 430
PvuII CAGCTG 1 cut(s) 854
RsaI GTAC 2 cut(s) 461, 776
RsaNI GTAC 2 cut(s) 460, 775
RseI CAYNNNNRTG 2 cut(s) 701, 836
SaqAI TTAA 6 cut(s) 101, 108, 420, 771, 813, 861
SatI GCNGC 3 cut(s) 783, 852, 855
Sau3AI GATC 6 cut(s) 195, 262, 278, 430, 693, 754
Sau96I GGNCC 2 cut(s) 511, 676
ScaI AGTACT 1 cut(s) 776
SchI GAGTC 1 cut(s) 553
SduI GDGCHC 1 cut(s) 605
SinI GGWCC 2 cut(s) 511, 676
SmiMI CAYNNNNRTG 2 cut(s) 701, 836
SmlI CTYRAG 2 cut(s) 100, 541
SmoI CTYRAG 2 cut(s) 100, 541
Sse9I AATT 2 cut(s) 142, 834
SsiI CCGC 2 cut(s) 68, 857
SspMI CTAG 1 cut(s) 266
TaaI ACNGT 2 cut(s) 113, 580
TasI AATT 2 cut(s) 142, 834
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 3 cut(s) 272, 589, 720
Tru1I TTAA 6 cut(s) 101, 108, 420, 771, 813, 861
Tru9I TTAA 6 cut(s) 101, 108, 420, 771, 813, 861
TseI GCWGC 3 cut(s) 782, 851, 854
TspDTI ATGAA 2 cut(s) 128, 189
Vha464I CTTAAG 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 511, 676
XbaI TCTAGA 1 cut(s) 265
XceI RCATGY 1 cut(s) 291
XspI CTAG 1 cut(s) 266
ZrmI AGTACT 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.