Rmu_ssc0000238.1_g000013

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000238.1
OG0000842
Physical Location & Seq
Reverse (-)
62268 .. 65248
2981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000238.1_g000013.1.cds

Sequence Viewer

Length: 684 bp
atggtagaaggagattctaagctactaattgatgatgttaagaagaataatttgctgccttggcgcctcaaaactttggtaagagacatccctaatctggcagccacctttgatgatatctgtttcgaccatattccccgtgaggctaactttgtggctgatgcaattgcaaatcaaggtcatcgacagaagaacccagttacttggaaagagaagctccctttatctgccctctcagcgttcaatttcgataagtttagctttggttgtagtagggtctggccatccatttggggatggtgggctgagctgtggcacagcttcgtgccttgtgacttgaagaaagcagcccagaaatggctgatgaacaccggatctcgatcattaacaaatagggctggcaaatcctaccgatccaaaccaaccaaccaagtccgtcccgaaccaaggatctcggttaccaaggggttcggttaccgaacttgtggtacggtacaaccgaaccgaataggggtaatcggtacggtatcgaacgctcttgttctgtggaataggagtataggactatggattaatggcgtgttcaatttttttcccttcttcctttctggtcatgtgttccaatctcaacaattcaagaaaccagggattcaaggcttagaagttagaactggagcaacgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

227

Amino Acids

25.74

Weight (kDa)

10.02

Isoelectric Point (pI)

24.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AclWI GGATC 3 cut(s) 382, 408, 458
AcoI YGGCCR 1 cut(s) 281
AcyI GRCGYC 1 cut(s) 64
AfaI GTAC 3 cut(s) 490, 495, 523
AfiI CCNNNNNNNGG 4 cut(s) 97, 357, 447, 511
AgsI TTSAA 5 cut(s) 244, 340, 586, 637, 653
AjnI CCWGG 1 cut(s) 643
AluBI AGCT 5 cut(s) 22, 217, 261, 310, 321
AluI AGCT 5 cut(s) 22, 217, 261, 310, 321
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 3 cut(s) 382, 408, 458
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 3 cut(s) 55, 101, 347
AseI ATTAAT 1 cut(s) 573
AspLEI GCGC 1 cut(s) 66
BalI TGGCCA 1 cut(s) 283
BanI GGYRCC 1 cut(s) 63
BbvI GCAGC 3 cut(s) 42, 113, 359
BccI CCATC 2 cut(s) 291, 292
BciT130I CCWGG 1 cut(s) 645
BcoDI GTCTC 1 cut(s) 78
BfoI RGCGCY 1 cut(s) 67
BisI GCNGC 3 cut(s) 56, 102, 348
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 3 cut(s) 57, 103, 349
Bme1390I CCNGG 1 cut(s) 645
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 645
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 191
Bpu1102I GCTNAGC 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 379
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 4 cut(s) 59, 446, 462, 644
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 357, 447, 511
Bse1I ACTGG 2 cut(s) 197, 676
Bse8I GATNNNNATC 1 cut(s) 379
BseBI CCWGG 1 cut(s) 645
BseDI CCNNGG 4 cut(s) 59, 446, 462, 644
BseGI GGATG 3 cut(s) 87, 284, 302
BseJI GATNNNNATC 1 cut(s) 379
BseLI CCNNNNNNNGG 4 cut(s) 97, 357, 447, 511
BseMII CTCAG 2 cut(s) 249, 297
BseNI ACTGG 2 cut(s) 197, 676
BseXI GCAGC 3 cut(s) 42, 113, 359
BshFI GGCC 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 4 cut(s) 97, 357, 447, 511
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 1 cut(s) 283
Bsp143I GATC 4 cut(s) 374, 380, 413, 450
Bsp1720I GCTNAGC 1 cut(s) 306
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 2 cut(s) 248, 298
BspLI GGNNCC 1 cut(s) 65
BspPI GGATC 3 cut(s) 382, 408, 458
BspT107I GGYRCC 1 cut(s) 63
BsrI ACTGG 2 cut(s) 197, 676
BssECI CCNNGG 4 cut(s) 59, 446, 462, 644
BssMI GATC 4 cut(s) 374, 380, 413, 450
BssNI GRCGYC 1 cut(s) 64
BssT1I CCWWGG 3 cut(s) 59, 446, 462
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 2 cut(s) 493, 526
BstACI GRCGYC 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 4 cut(s) 18, 235, 306, 658
BstEII GGTNACC 2 cut(s) 457, 473
BstF5I GGATG 3 cut(s) 87, 284, 302
BstH2I RGCGCY 1 cut(s) 67
BstHHI GCGC 1 cut(s) 66
BstKTI GATC 4 cut(s) 377, 383, 416, 453
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 4 cut(s) 374, 380, 413, 450
BstMWI GCNNNNNNNGC 2 cut(s) 61, 236
BstNI CCWGG 1 cut(s) 645
BstPI GGTNACC 2 cut(s) 457, 473
BstSCI CCNGG 1 cut(s) 643
BstV1I GCAGC 3 cut(s) 42, 113, 359
BstX2I RGATCY 2 cut(s) 374, 450
BstXI CCANNNNNNTGG 2 cut(s) 204, 291
BstYI RGATCY 2 cut(s) 374, 450
BsuRI GGCC 1 cut(s) 283
BtsCI GGATG 3 cut(s) 87, 284, 302
Cac8I GCNNGC 1 cut(s) 400
CfoI GCGC 1 cut(s) 66
Csp6I GTAC 3 cut(s) 489, 494, 522
CviAII CATG 1 cut(s) 614
CviQI GTAC 3 cut(s) 489, 494, 522
DdeI CTNAG 4 cut(s) 18, 235, 306, 658
DinI GGCGCC 1 cut(s) 65
DpnI GATC 4 cut(s) 376, 382, 415, 452
DpnII GATC 4 cut(s) 374, 380, 413, 450
EaeI YGGCCR 1 cut(s) 281
Eco130I CCWWGG 3 cut(s) 59, 446, 462
Eco32I GATATC 1 cut(s) 118
Eco91I GGTNACC 2 cut(s) 457, 473
EcoO65I GGTNACC 2 cut(s) 457, 473
EcoRII CCWGG 1 cut(s) 643
EcoRV GATATC 1 cut(s) 118
EcoT14I CCWWGG 3 cut(s) 59, 446, 462
EgeI GGCGCC 1 cut(s) 65
EheI GGCGCC 1 cut(s) 65
ErhI CCWWGG 3 cut(s) 59, 446, 462
FaeI CATG 1 cut(s) 617
FaiI YATR 4 cut(s) 132, 560, 568, 615
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 423
FatI CATG 1 cut(s) 613
Fnu4HI GCNGC 3 cut(s) 56, 102, 348
FokI GGATG 3 cut(s) 74, 271, 309
Fsp4HI GCNGC 3 cut(s) 56, 102, 348
GlaI GCGC 1 cut(s) 65
GluI GCNGC 3 cut(s) 56, 102, 348
HaeII RGCGCY 1 cut(s) 67
HaeIII GGCC 1 cut(s) 283
HapII CCGG 1 cut(s) 372
HhaI GCGC 1 cut(s) 66
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 1 cut(s) 617
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
HinfI GANTC 2 cut(s) 14, 649
HpaII CCGG 1 cut(s) 372
Hpy188III TCNNGA 3 cut(s) 378, 440, 637
HpyAV CCTTC 1 cut(s) 607
HpyCH4III ACNGT 2 cut(s) 493, 526
HpyCH4IV ACGT 1 cut(s) 680
HpyCH4V TGCA 2 cut(s) 164, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 236
HpyF3I CTNAG 4 cut(s) 18, 235, 306, 658
HpySE526I ACGT 1 cut(s) 680
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 1 cut(s) 617
HspAI GCGC 1 cut(s) 64
KasI GGCGCC 1 cut(s) 63
Kzo9I GATC 4 cut(s) 374, 380, 413, 450
LmnI GCTCC 2 cut(s) 222, 674
Lsp1109I GCAGC 3 cut(s) 42, 113, 359
LweI GCATC 1 cut(s) 151
MaeII ACGT 1 cut(s) 680
MaeIII GTNAC 4 cut(s) 199, 332, 457, 473
MalI GATC 4 cut(s) 376, 382, 415, 452
MboI GATC 4 cut(s) 374, 380, 413, 450
MboII GAAGA 4 cut(s) 55, 202, 352, 592
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 2 cut(s) 374, 450
MlsI TGGCCA 1 cut(s) 283
MluCI AATT 6 cut(s) 27, 49, 165, 244, 586, 632
MluNI TGGCCA 1 cut(s) 283
Mly113I GGCGCC 1 cut(s) 64
MnlI CCTC 3 cut(s) 77, 136, 242
Mox20I TGGCCA 1 cut(s) 283
MscI TGGCCA 1 cut(s) 283
MseI TTAA 3 cut(s) 39, 386, 573
Msp20I TGGCCA 1 cut(s) 283
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 1 cut(s) 645
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 645
MwoI GCNNNNNNNGC 2 cut(s) 61, 236
NarI GGCGCC 1 cut(s) 64
NdeII GATC 4 cut(s) 374, 380, 413, 450
NlaIII CATG 1 cut(s) 617
NlaIV GGNNCC 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 332
PcsI WCGNNNNNNNCGW 1 cut(s) 497
PfeI GAWTC 2 cut(s) 14, 649
PkrI GCNGC 3 cut(s) 57, 103, 349
PluTI GGCGCC 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 643
PspEI GGTNACC 2 cut(s) 457, 473
PspGI CCWGG 1 cut(s) 643
PspN4I GGNNCC 1 cut(s) 65
PsrI GAACNNNNNNTAC 2 cut(s) 472, 504
PsuI RGATCY 2 cut(s) 374, 450
RsaI GTAC 3 cut(s) 490, 495, 523
RsaNI GTAC 3 cut(s) 489, 494, 522
SaqAI TTAA 3 cut(s) 39, 386, 573
SatI GCNGC 3 cut(s) 56, 102, 348
Sau3AI GATC 4 cut(s) 374, 380, 413, 450
ScrFI CCNGG 1 cut(s) 645
SetI ASST 8 cut(s) 24, 110, 181, 219, 263, 312, 323, 683
SfaNI GCATC 1 cut(s) 151
SfoI GGCGCC 1 cut(s) 65
Sse9I AATT 6 cut(s) 27, 49, 165, 244, 586, 632
SspDI GGCGCC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 643
StyI CCWWGG 3 cut(s) 59, 446, 462
TaaI ACNGT 2 cut(s) 493, 526
TaiI ACGT 1 cut(s) 683
TaqI TCGA 5 cut(s) 126, 184, 249, 379, 530
TasI AATT 6 cut(s) 27, 49, 165, 244, 586, 632
TfiI GAWTC 2 cut(s) 14, 649
Tru1I TTAA 3 cut(s) 39, 386, 573
Tru9I TTAA 3 cut(s) 39, 386, 573
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 3 cut(s) 55, 101, 347
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 1 cut(s) 380
TspGWI ACGGA 1 cut(s) 425
VspI ATTAAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.