Prupe.3G156200_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000842
Physical Location & Seq
Reverse (-)
17448783 .. 17450733
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G156200.1

Sequence Viewer

Length: 615 bp
ATGAAAACAAATAATATAAATACACAACTCACTAGACACAAGGGATGCCAAGGAAAAGGTAGCGGGCAAGAGCAGTATTGGCACAAAAGATCTCGTGTAAAGTGGTTGAAGTATGGTTACTCAAATTCAAAGTTTTTTCACTTGTTCATGACCATCATAAGAAGGAAGAATCGTATCCTCCATATTAAGGGGGTGATGGAGGAAGTGAAAGTTGCTGCTTTCAATCTTGTATCTTTAATGGCACCTAGTCCAAACGGCTTCCTTGGACTCTTCTACCACAAATACTCGGAGCAAGTTAATGAGATCTTACGTAATACTACTCAGTCTACAACTAATTGGGGTGGGGATCTTCGAAAAATTAATCAGACTCACCTTATCCCAAAAGTTTCGAGCCTGGAATCGGCCACCAAATTTCTTCCTGTTTGTTTGTGCAACAATTCATATAAAATACTTGCGAAGATTTTGGCGAACAGGCTTAAGAAAATCCTCCCTTGCATCATCTCCCACCATCAAAATGCCTTTGTGCCTAACCGCCAAATCCAGGATAAAATCCTTGTGGCGCACGAAGCCCTTCACTACCTCAAACACAAGAAGAAAGGAAAGCTGGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

205

Amino Acids

23.55

Weight (kDa)

10.26

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 241
AccI GTMKAC 1 cut(s) 326
AciI CCGC 2 cut(s) 63, 532
AclWI GGATC 1 cut(s) 354
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 2 cut(s) 124, 410
AfiI CCNNNNNNNGG 3 cut(s) 187, 400, 541
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 3 cut(s) 109, 129, 223
AjnI CCWGG 2 cut(s) 393, 540
AluBI AGCT 1 cut(s) 604
AluI AGCT 1 cut(s) 604
AlwI GGATC 1 cut(s) 354
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 2 cut(s) 124, 410
AseI ATTAAT 1 cut(s) 360
Asp700I GAANNNNTTC 1 cut(s) 570
AspLEI GCGC 1 cut(s) 562
AsuHPI GGTGA 2 cut(s) 205, 362
AsuII TTCGAA 1 cut(s) 352
BanI GGYRCC 1 cut(s) 241
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BauI CACGAG 1 cut(s) 93
BbvI GCAGC 1 cut(s) 202
BccI CCATC 3 cut(s) 161, 190, 516
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 2 cut(s) 395, 542
BciVI GTATCC 1 cut(s) 185
BfaI CTAG 2 cut(s) 33, 246
BfrI CTTAAG 1 cut(s) 476
BfuI GTATCC 1 cut(s) 185
BglII AGATCT 2 cut(s) 89, 303
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 2 cut(s) 395, 542
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 2 cut(s) 395, 542
BmsI GCATC 2 cut(s) 35, 504
Bpu14I TTCGAA 1 cut(s) 352
BsaAI YACGTR 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 49, 262
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 400, 541
BseBI CCWGG 2 cut(s) 395, 542
BseDI CCNNGG 2 cut(s) 49, 262
BseGI GGATG 1 cut(s) 50
BseLI CCNNNNNNNGG 3 cut(s) 187, 400, 541
BseMII CTCAG 1 cut(s) 335
BseXI GCAGC 1 cut(s) 202
BshFI GGCC 1 cut(s) 404
BshNI GGYRCC 1 cut(s) 241
BslI CCNNNNNNNGG 3 cut(s) 187, 400, 541
BsnI GGCC 1 cut(s) 404
Bsp119I TTCGAA 1 cut(s) 352
Bsp143I GATC 3 cut(s) 89, 303, 346
BspACI CCGC 2 cut(s) 63, 532
BspANI GGCC 1 cut(s) 404
BspCNI CTCAG 1 cut(s) 334
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 1 cut(s) 354
BspT104I TTCGAA 1 cut(s) 352
BspT107I GGYRCC 1 cut(s) 241
BspTI CTTAAG 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 49, 262
BssMI GATC 3 cut(s) 89, 303, 346
BssSI CACGAG 1 cut(s) 93
BssT1I CCWWGG 2 cut(s) 49, 262
Bst2BI CACGAG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 395, 542
Bst6I CTCTTC 1 cut(s) 275
BstAFI CTTAAG 1 cut(s) 476
BstBAI YACGTR 1 cut(s) 311
BstBI TTCGAA 1 cut(s) 352
BstC8I GCNNGC 2 cut(s) 65, 606
BstDEI CTNAG 2 cut(s) 321, 612
BstF5I GGATG 1 cut(s) 50
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 3 cut(s) 92, 306, 349
BstMBI GATC 3 cut(s) 89, 303, 346
BstMWI GCNNNNNNNGC 2 cut(s) 79, 566
BstNI CCWGG 2 cut(s) 395, 542
BstSCI CCNGG 2 cut(s) 393, 540
BstSNI TACGTA 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 202
BstX2I RGATCY 3 cut(s) 89, 303, 346
BstYI RGATCY 3 cut(s) 89, 303, 346
BsuI GTATCC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 404
BtsCI GGATG 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 65, 606
CciI TCATGA 1 cut(s) 147
CfoI GCGC 1 cut(s) 562
CviAII CATG 1 cut(s) 148
CviJI RGCY 7 cut(s) 258, 393, 404, 475, 569, 604, 608
CviKI_1 RGCY 7 cut(s) 258, 393, 404, 475, 569, 604, 608
DdeI CTNAG 2 cut(s) 321, 612
DpnI GATC 3 cut(s) 91, 305, 348
DpnII GATC 3 cut(s) 89, 303, 346
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Eco105I TACGTA 1 cut(s) 311
Eco130I CCWWGG 2 cut(s) 49, 262
EcoRII CCWGG 2 cut(s) 393, 540
EcoT14I CCWWGG 2 cut(s) 49, 262
ErhI CCWWGG 2 cut(s) 49, 262
FaeI CATG 1 cut(s) 151
FaiI YATR 7 cut(s) 17, 114, 149, 158, 183, 442, 444
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 56
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 2 cut(s) 33, 246
GlaI GCGC 1 cut(s) 561
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 404
HhaI GCGC 1 cut(s) 562
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HinfI GANTC 4 cut(s) 169, 267, 367, 398
HphI GGTGA 2 cut(s) 205, 362
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 2 cut(s) 289, 366
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 2 cut(s) 156, 581
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 2 cut(s) 432, 495
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 566
HpyF3I CTNAG 2 cut(s) 321, 612
HpySE526I ACGT 1 cut(s) 310
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 560
Kzo9I GATC 3 cut(s) 89, 303, 346
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 7 cut(s) 380, 407, 432, 457, 527, 554, 590
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 2 cut(s) 35, 504
MaeI CTAG 2 cut(s) 33, 246
MaeII ACGT 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 116
MalI GATC 3 cut(s) 91, 305, 348
MboI GATC 3 cut(s) 89, 303, 346
MboII GAAGA 6 cut(s) 178, 262, 341, 407, 469, 604
MflI RGATCY 3 cut(s) 89, 303, 346
MluCI AATT 5 cut(s) 124, 334, 357, 410, 436
MlyI GAGTC 2 cut(s) 261, 361
MnlI CCTC 4 cut(s) 188, 193, 497, 590
MroXI GAANNNNTTC 1 cut(s) 570
MseI TTAA 5 cut(s) 186, 236, 297, 360, 477
MslI CAYNNNNRTG 1 cut(s) 513
MspCI CTTAAG 1 cut(s) 476
MspR9I CCNGG 2 cut(s) 395, 542
MvaI CCWGG 2 cut(s) 395, 542
MwoI GCNNNNNNNGC 2 cut(s) 79, 566
NdeII GATC 3 cut(s) 89, 303, 346
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 243
NspV TTCGAA 1 cut(s) 352
PagI TCATGA 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 2 cut(s) 169, 398
PfoI TCCNGGA 1 cut(s) 540
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 2 cut(s) 261, 361
PpsI GAGTC 2 cut(s) 261, 361
Ppu21I YACGTR 1 cut(s) 311
PshBI ATTAAT 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 393, 540
PspGI CCWGG 2 cut(s) 393, 540
PspN4I GGNNCC 1 cut(s) 243
PsuI RGATCY 3 cut(s) 89, 303, 346
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 5 cut(s) 186, 236, 297, 360, 477
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 3 cut(s) 89, 303, 346
SchI GAGTC 2 cut(s) 261, 361
ScrFI CCNGG 2 cut(s) 395, 542
SetI ASST 6 cut(s) 61, 247, 313, 375, 582, 606
SfaNI GCATC 2 cut(s) 35, 504
SfuI TTCGAA 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SnaBI TACGTA 1 cut(s) 311
Sse9I AATT 5 cut(s) 124, 334, 357, 410, 436
SsiI CCGC 2 cut(s) 63, 532
SspMI CTAG 2 cut(s) 33, 246
StyD4I CCNGG 2 cut(s) 393, 540
StyI CCWWGG 2 cut(s) 49, 262
TaiI ACGT 1 cut(s) 313
TaqI TCGA 2 cut(s) 352, 389
TasI AATT 5 cut(s) 124, 334, 357, 410, 436
TfiI GAWTC 2 cut(s) 169, 398
Tru1I TTAA 5 cut(s) 186, 236, 297, 360, 477
Tru9I TTAA 5 cut(s) 186, 236, 297, 360, 477
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 3 cut(s) 17, 136, 429
Vha464I CTTAAG 1 cut(s) 476
VspI ATTAAT 1 cut(s) 360
XapI RAATTY 2 cut(s) 124, 410
XmiI GTMKAC 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 2 cut(s) 33, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.