Rh7BG241100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000842
Physical Location & Seq
Reverse (-)
21282148 .. 21282510
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG241100.1

Sequence Viewer

Length: 363 bp
ATGCTAATGATTTACATTCTTCTGATGATTGGTTTCTTTCCTTGTTCAGGAAGGAAACTCAAAAATCCAGCACTGAAAATCACATCCTTCTGTGTTGGAAAATCTGGGAAGCTCGAAATAACCTTATTTTCAGAAGAGCTTTCTACTCTTCCAGCCTCAGTTGTTCATGCTGTAGCCTCCATTGATGACAATTACAGAAGGCATAATCCAAGCAACCATGGTAGGCCTTCTACTGATATCAACAATTGTCTGGATCATGCTGCAGTTATCAGATGGCTTCCTCCCCCTCGCCATTTTGCTAAATTAAACTTTGATGGCTCCAAAGAAAGCCGTAAGAGATGGTCTTTATCATGCCATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

120

Amino Acids

13.52

Weight (kDa)

9.59

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 47
AluBI AGCT 2 cut(s) 112, 139
AluI AGCT 2 cut(s) 112, 139
AlwI GGATC 1 cut(s) 261
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 247
BccI CCATC 3 cut(s) 267, 308, 333
BceAI ACGGC 1 cut(s) 315
BfmI CTRYAG 2 cut(s) 171, 261
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 247
BshFI GGCC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 47
BsnI GGCC 1 cut(s) 226
Bsp143I GATC 1 cut(s) 253
Bsp19I CCATGG 1 cut(s) 217
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 319
BspMAI CTGCAG 1 cut(s) 265
BspPI GGATC 1 cut(s) 261
BspQI GCTCTTC 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 217
Bst6I CTCTTC 2 cut(s) 129, 153
BstDEI CTNAG 1 cut(s) 157
BstDSI CCRYGG 1 cut(s) 217
BstENI CCTNNNNNAGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 83
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstSFI CTRYAG 2 cut(s) 171, 261
BstV1I GCAGC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 226
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 71
CviAII CATG 5 cut(s) 167, 218, 257, 351, 356
CviJI RGCY 8 cut(s) 112, 139, 155, 176, 226, 277, 318, 330
CviKI_1 RGCY 8 cut(s) 112, 139, 155, 176, 226, 277, 318, 330
DdeI CTNAG 1 cut(s) 157
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 129, 153
EarI CTCTTC 2 cut(s) 129, 153
Eco130I CCWWGG 1 cut(s) 217
Eco147I AGGCCT 1 cut(s) 226
Eco32I GATATC 1 cut(s) 238
EcoNI CCTNNNNNAGG 1 cut(s) 45
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 5 cut(s) 170, 221, 260, 354, 359
FaiI YATR 6 cut(s) 168, 204, 219, 258, 352, 357
FatI CATG 5 cut(s) 166, 217, 256, 350, 355
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 261
HaeIII GGCC 1 cut(s) 226
Hin1II CATG 5 cut(s) 170, 221, 260, 354, 359
Hpy188I TCNGA 3 cut(s) 24, 133, 272
Hpy188III TCNNGA 2 cut(s) 48, 251
HpyAV CCTTC 4 cut(s) 45, 97, 192, 237
HpyCH4V TGCA 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 157
Hsp92II CATG 5 cut(s) 170, 221, 260, 354, 359
Kzo9I GATC 1 cut(s) 253
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 5 cut(s) 33, 81, 90, 165, 236
Lsp1109I GCAGC 1 cut(s) 247
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 3 cut(s) 11, 140, 146
MfeI CAATTG 1 cut(s) 244
MluCI AATT 3 cut(s) 190, 244, 302
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 4 cut(s) 166, 187, 291, 297
MseI TTAA 1 cut(s) 305
MunI CAATTG 1 cut(s) 244
NcoI CCATGG 1 cut(s) 217
NdeII GATC 1 cut(s) 253
NlaIII CATG 5 cut(s) 170, 221, 260, 354, 359
NlaIV GGNNCC 1 cut(s) 319
PceI AGGCCT 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 129
PkrI GCNGC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 319
PstI CTGCAG 1 cut(s) 265
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 1 cut(s) 253
SetI ASST 3 cut(s) 114, 125, 141
SfcI CTRYAG 2 cut(s) 171, 261
Sse9I AATT 3 cut(s) 190, 244, 302
SseBI AGGCCT 1 cut(s) 226
StuI AGGCCT 1 cut(s) 226
StyI CCWWGG 1 cut(s) 217
TaqI TCGA 1 cut(s) 114
TasI AATT 3 cut(s) 190, 244, 302
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 1 cut(s) 78
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 155
TspRI CASTG 1 cut(s) 78
XagI CCTNNNNNAGG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.