Prupe.4G274400_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000842
Physical Location & Seq
Forward (+)
22847181 .. 22850399
3219 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G274400.1

Sequence Viewer

Length: 657 bp
ATGGACATGTGTCAGCTTGCTATTGGACCATTTAAAAAAGAATCAAAATCGGGAAATTTTACCATTTATCATTTAGTGGCCTACTCCTCAAATCATCAACCAATTTTGTTACTTCCTGACACGCAACCCGGTGATGCTACTCTGCGTAGGAGGGGTCCACCTTGTTTTCATTTTGAGGAGCAATGGGTCACAGATGAAGAATGTGAACATATTATTCAGGCGGGGTGTTCTTGCCAAGAGGTTGAAAAAGCTATGCCATATGTTATCTCGGAATATCAAAGTGTTTTTATTCCCAATCGTATGATATTGGACAACGTTCTTGCAGCCTTTGAAGCTATCCATTGTTTGAAGCGTAGAGGAAAGATGGGGCATCGGAGAATTATTCTAAAACTTGATGTGGCTAAAGCTTATGATAGAGGTCTTCGTCAAGGCGATCCTCTTTCCTCATATCTTTTTCTAATTGTGGTTGAAGGTTTTTCTACTCTGCTTCAAAAAGTTGATTGTGATTCTCGAGTTTGTGGGATTTCTATTGCCCTTTCTACCCCGTCTATCAATCACCTATTTTTTGCAGATGACAATCTCCTATTTTATGATGCAGAGTCTTCTCAAATTATGAAGCTGAAATGCATTTTTGGTCTTTATGAAGCTGCATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 map04621
Pfam Domains
Protein Families
7tm_3 ANF_receptor NCD3G RVT_1 RVT_3 zf-RVT

Protein Analysis

219

Amino Acids

24.65

Weight (kDa)

5.97

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 221
AclI AACGTT 1 cut(s) 315
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 1 cut(s) 55
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 5 cut(s) 245, 332, 349, 470, 491
AluBI AGCT 6 cut(s) 16, 251, 335, 407, 619, 647
AluI AGCT 6 cut(s) 16, 251, 335, 407, 619, 647
AlwI GGATC 1 cut(s) 428
Ama87I CYCGRG 1 cut(s) 510
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 323, 647
ApoI RAATTY 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 26, 155
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 2 cut(s) 143, 548
AvaI CYCGRG 1 cut(s) 510
AvaII GGWCC 2 cut(s) 26, 155
BbsI GAAGAC 2 cut(s) 413, 594
BbvI GCAGC 2 cut(s) 335, 634
BccI CCATC 1 cut(s) 358
BcnI CCSGG 1 cut(s) 129
BisI GCNGC 2 cut(s) 324, 648
BlsI GCNGC 2 cut(s) 325, 649
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 2 cut(s) 26, 155
BmeT110I CYCGRG 1 cut(s) 510
BmgT120I GGNCC 2 cut(s) 26, 155
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 3 cut(s) 124, 379, 583
BoxI GACNNNNGTC 1 cut(s) 9
BpiI GAAGAC 2 cut(s) 413, 594
BpuMI CCSGG 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 576
Bse3DI GCAATG 1 cut(s) 188
Bse8I GATNNNNATC 1 cut(s) 576
BseJI GATNNNNATC 1 cut(s) 576
BseMI GCAATG 1 cut(s) 188
BseRI GAGGAG 2 cut(s) 76, 191
BseXI GCAGC 2 cut(s) 335, 634
BshFI GGCC 1 cut(s) 80
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 1 cut(s) 129
BsnI GGCC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 510
Bsp143I GATC 1 cut(s) 433
BspACI CCGC 1 cut(s) 221
BspANI GGCC 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 188
BssMI GATC 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 18
BstKTI GATC 1 cut(s) 436
BstMBI GATC 1 cut(s) 433
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 10
BstPAI GACNNNNGTC 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 335, 634
BstV2I GAAGAC 2 cut(s) 413, 594
BsuRI GGCC 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 18
Cfr13I GGNCC 2 cut(s) 26, 155
CviAII CATG 1 cut(s) 7
CviJI RGCY 9 cut(s) 16, 80, 251, 326, 335, 401, 407, 619, 647
CviKI_1 RGCY 9 cut(s) 16, 80, 251, 326, 335, 401, 407, 619, 647
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
DraI TTTAAA 1 cut(s) 34
Eco47I GGWCC 2 cut(s) 26, 155
Eco88I CYCGRG 1 cut(s) 510
EcoT22I ATGCAT 1 cut(s) 629
FaeI CATG 1 cut(s) 10
FatI CATG 1 cut(s) 6
FauI CCCGC 1 cut(s) 214
FauNDI CATATG 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 324, 648
Fsp4HI GCNGC 2 cut(s) 324, 648
GluI GCNGC 2 cut(s) 324, 648
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 129
Hin1II CATG 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 3 cut(s) 41, 506, 599
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 143, 548
Hpy166II GTNNAC 2 cut(s) 158, 206
Hpy188I TCNGA 2 cut(s) 271, 375
Hpy188III TCNNGA 4 cut(s) 51, 116, 510, 654
Hpy8I GTNNAC 2 cut(s) 158, 206
HpyAV CCTTC 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 5 cut(s) 323, 569, 596, 627, 650
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 129, 142, 203
Lsp1109I GCAGC 2 cut(s) 335, 634
LweI GCATC 3 cut(s) 124, 379, 583
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 108, 187
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 3 cut(s) 209, 413, 594
MluCI AATT 5 cut(s) 55, 102, 378, 459, 609
MlyI GAGTC 1 cut(s) 608
MnlI CCTC 8 cut(s) 97, 144, 169, 232, 350, 410, 447, 454
Mph1103I ATGCAT 1 cut(s) 629
MseI TTAA 1 cut(s) 33
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 332
NciI CCSGG 1 cut(s) 129
NdeI CATATG 1 cut(s) 259
NdeII GATC 1 cut(s) 433
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 187
NsiI ATGCAT 1 cut(s) 629
NspI RCATGY 1 cut(s) 10
PaeR7I CTCGAG 1 cut(s) 510
PciI ACATGT 1 cut(s) 6
PfeI GAWTC 2 cut(s) 41, 506
PkrI GCNGC 2 cut(s) 325, 649
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
PscI ACATGT 1 cut(s) 6
PshAI GACNNNNGTC 1 cut(s) 9
Psp1406I AACGTT 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 2 cut(s) 26, 155
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 2 cut(s) 324, 648
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 2 cut(s) 26, 155
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 1 cut(s) 129
SfaNI GCATC 3 cut(s) 124, 379, 583
Sfr274I CTCGAG 1 cut(s) 510
SinI GGWCC 2 cut(s) 26, 155
SlaI CTCGAG 1 cut(s) 510
SmlI CTYRAG 1 cut(s) 510
SmoI CTYRAG 1 cut(s) 510
Sse9I AATT 5 cut(s) 55, 102, 378, 459, 609
SsiI CCGC 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 127
TaiI ACGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 511
TasI AATT 5 cut(s) 55, 102, 378, 459, 609
TfiI GAWTC 2 cut(s) 41, 506
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 2 cut(s) 323, 647
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 4 cut(s) 158, 210, 629, 657
VpaK11BI GGWCC 2 cut(s) 26, 155
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 10
XhoI CTCGAG 1 cut(s) 510
Zsp2I ATGCAT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.