Prupe.7G164000_v2.0.a1

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000842
Physical Location & Seq
Reverse (-)
16884732 .. 16885575
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G164000.1

Sequence Viewer

Length: 807 bp
ATGAAAAGCCTATTGAAGCTCAACAATAATCCCTATTTTCAACTTTTTATACAGATTTGGCAATTTATTGTATTTGGGCGATTTCTAATTGTTGATCGCAATTACATGACACGTTGTAAAGTTGAACTAGAGAAACAGATTGTCGATTACATACTTTTGACGCTCATTCCTAAGGTAGACAAACCAACAAAAGTTATTGAGTTTCGGCCGATTAGTTTGTGTACAATGATTTATAAGATGATATCCAAGACGATTTCCAAAATTATAGTTAACAGGTTGAAGCCTATTATGCCTCTTATTATCTTCGAGTTTCAAAGCGCGTTTGTCCCTACACGGTTGATTATGGATAACATTATTGCTGCTTTTGAGAGCATACATGCTATTAAACGGCATGGTGGGAGTAAGCTGAAGAAAATGGTATTAAAGCTTGATATGTATAAAGCTTATGACATAGTGGAATGGACCTTTATTGAGGCTATGCTTAAGAGCTTGGACTTTAACGACAGATGGGTGAAGCTAATTATGGATTGTATATCCACTGTTACATACTCTGTCCAAGTTCGGGGGGTGGCTTCGGGAATGATTGTGCCATCAAGGGGGCTGCGCCAAGGAGATCCTCTCTCTCCATATCTGTTTTTAATCTGTGTGGAGGGGTTGTCTGCTTTGCTTTCTAACGCACTCAGAATCAAGCGTATCAGCGGCATTTTTGTGGCTCATGGAGCACCTACTATTTCTCATTTATTTTTTGCAGATGATAGTCTACTTTTTTGTAATGCCCATCTAGCTGATTGTGCTCATTTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

269

Amino Acids

30.74

Weight (kDa)

9.48

Isoelectric Point (pI)

26.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000842)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15420 FvH4_2g00771 FvH4_3g29363
malus_domestica MD02G1293300.v1.1 MD06G1023000.v1.1 MD09G1232900.v1.1
prunus_persica Prupe.1G181500_v2.0.a1 Prupe.1G572100_v2.0.a1 Prupe.2G095500_v2.0.a1 Prupe.3G150400_v2.0.a1 Prupe.3G156200_v2.0.a1 Prupe.4G274400_v2.0.a1 Prupe.5G070700_v2.0.a1 Prupe.7G038000_v2.0.a1 Prupe.7G164000_v2.0.a1 Prupe.8G056500_v2.0.a1
pyrus_communis pycom04g02040 pycom05g04600 pycom07g05610 pycom08g16130 pycom11g16470 pycom12g07830 pycom15g38190 pycom215g00040
rosa_chinensis RchiOBHm_Chr1g0348881 RchiOBHm_Chr5g0032951 RchiOBHm_Chr6g0273271 RchiOBHm_Chr7g0218191 RchiOBHm_Chr7g0223721
rosa_multiflora Rmu_co8286615.1_g000001 Rmu_sc0001354.1_g000002 Rmu_sc0001925.1_g000003 Rmu_sc0001925.1_g000005 Rmu_sc0002221.1_g000004 Rmu_sc0002316.1_g000096 Rmu_sc0003291.1_g000005 Rmu_sc0003413.1_g000005 Rmu_sc0003542.1_g000011 Rmu_sc0004035.1_g000003 Rmu_sc0004035.1_g000004 Rmu_sc0004145.1_g000016 Rmu_sc0004660.1_g000004 Rmu_sc0005999.1_g000006 Rmu_sc0006123.1_g000002 Rmu_sc0006586.1_g000006 Rmu_sc0006889.1_g000029 Rmu_sc0008035.1_g000014 Rmu_sc0011962.1_g000002 Rmu_sc0029950.1_g000001 Rmu_sc0042409.1_g000001 Rmu_ssc0000238.1_g000013
rosa_roxburghii Rroxscaffold_2G00137410 Rroxscaffold_4G00312010 Rroxscaffold_4G00320800 Rroxscaffold_5G00341720 Rroxscaffold_5G00353530 Rroxscaffold_5G00360290 Rroxscaffold_7G00214170 Rroxscaffold_7G00215920
rosa_rugosa Rorug02G0157000
rosa_samantha Rh4BG196500 Rh6CG346400 Rh7BG241100 Rh7DG316300
rosa_wichuraiana Rw1G003610 Rw7G012170 Rw7G030150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AccI GTMKAC 2 cut(s) 177, 760
AccII CGCG 1 cut(s) 320
AciI CCGC 1 cut(s) 699
AclWI GGATC 1 cut(s) 608
AcoI YGGCCR 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 2 cut(s) 562, 596
AflII CTTAAG 1 cut(s) 482
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 5 cut(s) 16, 41, 125, 280, 314
AluBI AGCT 7 cut(s) 19, 406, 427, 443, 489, 517, 785
AluI AGCT 7 cut(s) 19, 406, 427, 443, 489, 517, 785
Alw21I GWGCWC 2 cut(s) 724, 796
AlwI GGATC 1 cut(s) 608
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 359, 601
AspLEI GCGC 2 cut(s) 320, 606
AspS9I GGNCC 1 cut(s) 462
AsuHPI GGTGA 1 cut(s) 523
AvaII GGWCC 1 cut(s) 462
AxyI CCTNAGG 1 cut(s) 171
Bbv12I GWGCWC 2 cut(s) 724, 796
BbvI GCAGC 2 cut(s) 346, 588
BccI CCATC 3 cut(s) 501, 598, 786
BceAI ACGGC 1 cut(s) 404
BfaI CTAG 2 cut(s) 128, 782
BfrI CTTAAG 1 cut(s) 482
BisI GCNGC 3 cut(s) 360, 602, 700
BlsI GCNGC 3 cut(s) 361, 603, 701
Bme18I GGWCC 1 cut(s) 462
BmgT120I GGNCC 1 cut(s) 462
BplI GAGNNNNNCTC 2 cut(s) 603, 635
BsaJI CCNNGG 1 cut(s) 607
BsaXI ACNNNNNCTCC 2 cut(s) 641, 671
Bsc4I CCNNNNNNNGG 2 cut(s) 562, 596
Bse21I CCTNAGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 607
BseLI CCNNNNNNNGG 2 cut(s) 562, 596
BseMII CTCAG 1 cut(s) 694
BseX3I CGGCCG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 346, 588
Bsh1236I CGCG 1 cut(s) 320
Bsh1285I CGRYCG 1 cut(s) 209
BshFI GGCC 1 cut(s) 208
BsiEI CGRYCG 1 cut(s) 209
BsiHKAI GWGCWC 2 cut(s) 724, 796
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 2 cut(s) 562, 596
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 724, 796
Bsp1407I TGTACA 1 cut(s) 221
Bsp143I GATC 2 cut(s) 94, 613
BspACI CCGC 1 cut(s) 699
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 693
BspFNI CGCG 1 cut(s) 320
BspPI GGATC 1 cut(s) 608
BspTI CTTAAG 1 cut(s) 482
BsrGI TGTACA 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 607
BssMI GATC 2 cut(s) 94, 613
BssT1I CCWWGG 1 cut(s) 607
Bst4CI ACNGT 2 cut(s) 336, 541
BstAFI CTTAAG 1 cut(s) 482
BstAUI TGTACA 1 cut(s) 221
BstDEI CTNAG 2 cut(s) 171, 680
BstFNI CGCG 1 cut(s) 320
BstHHI GCGC 2 cut(s) 320, 606
BstKTI GATC 2 cut(s) 97, 616
BstMBI GATC 2 cut(s) 94, 613
BstMCI CGRYCG 1 cut(s) 209
BstMWI GCNNNNNNNGC 4 cut(s) 289, 719, 782, 791
BstNSI RCATGY 1 cut(s) 380
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 346, 588
BstX2I RGATCY 1 cut(s) 613
BstYI RGATCY 1 cut(s) 613
BstZI CGGCCG 1 cut(s) 206
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 537
CfoI GCGC 2 cut(s) 320, 606
Cfr13I GGNCC 1 cut(s) 462
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 222
CviAII CATG 4 cut(s) 106, 377, 392, 716
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 2 cut(s) 171, 680
DpnI GATC 2 cut(s) 96, 615
DpnII GATC 2 cut(s) 94, 613
EaeI YGGCCR 1 cut(s) 206
EagI CGGCCG 1 cut(s) 206
EclXI CGGCCG 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 607
Eco32I GATATC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 462
Eco52I CGGCCG 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 428
Eco81I CCTNAGG 1 cut(s) 171
EcoRV GATATC 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 4 cut(s) 109, 380, 395, 719
FaqI GGGAC 1 cut(s) 311
FatI CATG 4 cut(s) 105, 376, 391, 715
FblI GTMKAC 2 cut(s) 177, 760
Fnu4HI GCNGC 3 cut(s) 360, 602, 700
Fsp4HI GCNGC 3 cut(s) 360, 602, 700
FspBI CTAG 2 cut(s) 128, 782
GlaI GCGC 2 cut(s) 319, 605
GluI GCNGC 3 cut(s) 360, 602, 700
HaeIII GGCC 1 cut(s) 208
HgaI GACGC 1 cut(s) 169
HhaI GCGC 2 cut(s) 320, 606
Hin1II CATG 4 cut(s) 109, 380, 395, 719
Hin6I GCGC 2 cut(s) 318, 604
HinP1I GCGC 2 cut(s) 318, 604
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 2 cut(s) 425, 441
HinfI GANTC 1 cut(s) 684
HpaI GTTAAC 1 cut(s) 271
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 4 cut(s) 178, 222, 271, 761
Hpy188I TCNGA 1 cut(s) 683
Hpy188III TCNNGA 1 cut(s) 576
Hpy8I GTNNAC 4 cut(s) 178, 222, 271, 761
HpyCH4III ACNGT 2 cut(s) 336, 541
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 749
HpyF10VI GCNNNNNNNGC 4 cut(s) 289, 719, 782, 791
HpyF3I CTNAG 2 cut(s) 171, 680
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 4 cut(s) 109, 380, 395, 719
HspAI GCGC 2 cut(s) 318, 604
KspAI GTTAAC 1 cut(s) 271
Kzo9I GATC 2 cut(s) 94, 613
LmnI GCTCC 1 cut(s) 719
LpnPI CCDG 1 cut(s) 259
Lsp1109I GCAGC 2 cut(s) 346, 588
MaeI CTAG 2 cut(s) 128, 782
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 541
MalI GATC 2 cut(s) 96, 615
MboI GATC 2 cut(s) 94, 613
MboII GAAGA 2 cut(s) 295, 421
MflI RGATCY 1 cut(s) 613
MhlI GDGCHC 2 cut(s) 724, 796
MluCI AATT 5 cut(s) 62, 87, 100, 261, 519
MnlI CCTC 4 cut(s) 303, 466, 627, 643
MseI TTAA 6 cut(s) 270, 384, 422, 483, 498, 638
MslI CAYNNNNRTG 1 cut(s) 707
MspA1I CMGCKG 1 cut(s) 699
MspCI CTTAAG 1 cut(s) 482
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 4 cut(s) 289, 719, 782, 791
NdeII GATC 2 cut(s) 94, 613
NlaIII CATG 4 cut(s) 109, 380, 395, 719
NspI RCATGY 1 cut(s) 380
PfeI GAWTC 1 cut(s) 684
PkrI GCNGC 3 cut(s) 361, 603, 701
PsiI TTATAA 1 cut(s) 234
PspPI GGNCC 1 cut(s) 462
PsuI RGATCY 1 cut(s) 613
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 1 cut(s) 707
SaqAI TTAA 6 cut(s) 270, 384, 422, 483, 498, 638
SatI GCNGC 3 cut(s) 360, 602, 700
Sau3AI GATC 2 cut(s) 94, 613
Sau96I GGNCC 1 cut(s) 462
SduI GDGCHC 2 cut(s) 724, 796
SinI GGWCC 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 5 cut(s) 62, 87, 100, 261, 519
SsiI CCGC 1 cut(s) 699
SspMI CTAG 2 cut(s) 128, 782
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 2 cut(s) 336, 541
TaiI ACGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 144, 306
TasI AATT 5 cut(s) 62, 87, 100, 261, 519
TatI WGTACW 1 cut(s) 221
TauI GCSGC 1 cut(s) 702
TfiI GAWTC 1 cut(s) 684
Tru1I TTAA 6 cut(s) 270, 384, 422, 483, 498, 638
Tru9I TTAA 6 cut(s) 270, 384, 422, 483, 498, 638
TscAI CASTG 1 cut(s) 544
TseI GCWGC 2 cut(s) 359, 601
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 544
Vha464I CTTAAG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 462
XceI RCATGY 1 cut(s) 380
XmiI GTMKAC 2 cut(s) 177, 760
XspI CTAG 2 cut(s) 128, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.