FvH4_2g05941

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
4928669 .. 4930108
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05941.t1

Sequence Viewer

Length: 1338 bp
ATGACTGTGGCTACCGTCTCTCCAATTTTGCACAATATCGATGACCTTGATGGGTTTCTTACGAAAAATAGACGACTAGATTCCGATCACAGTGAAATAGCTTCGACAGAGAAGACTAAAAGGCGTAAGATAACAGACACCTCTAATCAGGAAACCGTGGCTACCGTCTCTCCAATTTTGCACAATATCGATAACCTTGAAATTTCAAAAGAAGCAAGACTTGCATATTACAAGAAATCGAGTTCTTCTGGAGTGAGGTATGGGTCCTTACACAAGGGGTTAGGGCTTAGTGATGGTGTAATTGATCAATTACGCAACCAAAACACTAACAATCTATTATTGAACCATAAGAAACTTCATTTGGTTCTTGATCTAGACCACACCCTGTTGAATACCACTTCCCTTGATAAGATGTCACAAGACGAAGAATATCTGAAGACACAAACCCAATCTGATCATTCCCTGCAACATGTTCACATTGTGGATACTCCCAACATGAAAGTGATGACCAAGTTGAGGCCATATATTAGGACGTTTTTAATGGAAGCCAGTCAAATGTTTGAGCTGTCTATATACACCATGGGTACACAAGACTATGCGCTAGAAATGGCTAAGCTGCTTGATCCTGCAAATCAAATCTTTGGGGGTAGAGTCATATCACGTAGTGATAGCACAGATGAAGATCGGAAGGCTCTAGATAACATGCTTGCCCGAGAATCTGCTGTTGTCATCCTTGATGATACAAAAGATGTGTGGCAAAATAACAACCAGGATAATGTAATAGTAATGCCAAGGTATCATTTCTTTAAATCTAGTTGTCAACAATATGGCATCAGTTCTAGTTGTCAACAATATGGAATCAGTAATAGTAAGCCTTATTCCGAGTTGAAGACCGATGAATGTGATCGGTATGGAGGAGCTTATCTTGCAAGTGTACTGCAACTTCTTAGGCATGTCCACACCATCTTCTTTAATGAAGTCGAGTTAAAGGGATGGGATCTCATCGACAGAGACGTGAGGCCCGTCTTGAAAATCCTTCAGAAGGAAGTGTTGAAGGGATGTAAATTAGTATTTAGTCATATCTGGCCTTCAAATGTGAAGGCTGACACTCATCCTTTGTGGAAATTGGCAGAGCAGTTGGGAGCTACTTGTTCGACACAAGTGGATCCATCAGTCACACATGTGGTTGCAGCAGATGCTCGAACACAGAAGTCATGTTGGGCGGTAAAAAAAGGCAAGTTTTTGGTGAATCCACAGTGGATTGATACTACACTTTTTATGTGGCAAAGACAACCTGAATATAATTTCCCATGTCAAACCAACATTAAGCAGATCTAA

Protein Analysis

446

Amino Acids

50.79

Weight (kDa)

6.97

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 120 - 267 4.8e-25 NLI interacting factor-like phosphatase
BRCT PF00533 349 - 422 1.7e-08 BRCA1 C Terminus (BRCT) domain
PTCB-BRCT PF12738 369 - 420 1.4e-06 twin BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000221)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58003 AT5G58003 AT5G58003
fragaria_vesca FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica MD09G1131300.v1.1
prunus_persica Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis pycom09g05350
rosa_chinensis RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1223
AclWI GGATC 4 cut(s) 617, 1005, 1160, 1173
AcsI RAATTY 1 cut(s) 201
AcuI CTGAAG 2 cut(s) 455, 1022
AdeI CACNNNGTG 2 cut(s) 481, 665
AfaI GTAC 2 cut(s) 586, 936
AfiI CCNNNNNNNGG 2 cut(s) 516, 1042
AflIII ACRYGT 2 cut(s) 469, 1180
AgsI TTSAA 8 cut(s) 200, 207, 343, 391, 889, 1030, 1054, 1092
AjiI CACGTC 1 cut(s) 1015
AjnI CCWGG 1 cut(s) 768
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AleI CACNNNNGTG 1 cut(s) 1181
AluBI AGCT 5 cut(s) 101, 565, 616, 920, 1145
AluI AGCT 5 cut(s) 101, 565, 616, 920, 1145
Alw26I GTCTC 3 cut(s) 22, 172, 1005
AlwI GGATC 4 cut(s) 617, 1005, 1160, 1173
Ama87I CYCGRG 1 cut(s) 711
AoxI GGCC 3 cut(s) 518, 1019, 1085
ApeKI GCWGC 2 cut(s) 616, 1190
ApoI RAATTY 1 cut(s) 201
AspLEI GCGC 1 cut(s) 601
AspS9I GGNCC 2 cut(s) 264, 1020
AsuHPI GGTGA 1 cut(s) 1258
AvaI CYCGRG 1 cut(s) 711
AvaII GGWCC 1 cut(s) 264
BamHI GGATCC 1 cut(s) 1165
BarI GAAGNNNNNNTAC 2 cut(s) 927, 959
BbsI GAAGAC 3 cut(s) 119, 443, 896
BbvI GCAGC 2 cut(s) 603, 1202
BccI CCATC 5 cut(s) 44, 287, 971, 987, 1177
BciT130I CCWGG 1 cut(s) 770
BciVI GTATCC 1 cut(s) 478
BclI TGATCA 2 cut(s) 304, 454
BcoDI GTCTC 3 cut(s) 22, 172, 1005
BfaI CTAG 6 cut(s) 77, 374, 602, 695, 813, 840
BfuI GTATCC 1 cut(s) 478
BglII AGATCT 1 cut(s) 1332
BisI GCNGC 2 cut(s) 617, 1191
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 2 cut(s) 618, 1192
Bme1390I CCNGG 1 cut(s) 770
Bme18I GGWCC 1 cut(s) 264
BmeT110I CYCGRG 1 cut(s) 711
BmgBI CACGTC 1 cut(s) 1015
BmgT120I GGNCC 2 cut(s) 264, 1020
BmiI GGNNCC 2 cut(s) 265, 1167
BmrFI CCNGG 1 cut(s) 770
BmsI GCATC 2 cut(s) 840, 1186
BpiI GAAGAC 3 cut(s) 119, 443, 896
BpmI CTGGAG 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 612
Bsa29I ATCGAT 2 cut(s) 39, 189
BsaAI YACGTR 1 cut(s) 662
BsaBI GATNNNNATC 2 cut(s) 84, 681
BsaJI CCNNGG 3 cut(s) 156, 579, 791
BsaXI ACNNNNNCTCC 3 cut(s) 34, 154, 184
Bsc4I CCNNNNNNNGG 2 cut(s) 516, 1042
Bse1I ACTGG 1 cut(s) 549
Bse8I GATNNNNATC 2 cut(s) 84, 681
BseBI CCWGG 1 cut(s) 770
BseCI ATCGAT 2 cut(s) 39, 189
BseDI CCNNGG 3 cut(s) 156, 579, 791
BseGI GGATG 4 cut(s) 729, 998, 1064, 1111
BseJI GATNNNNATC 2 cut(s) 84, 681
BseLI CCNNNNNNNGG 2 cut(s) 516, 1042
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 1 cut(s) 930
BseXI GCAGC 2 cut(s) 603, 1202
BshFI GGCC 3 cut(s) 520, 1021, 1087
BshVI ATCGAT 2 cut(s) 39, 189
BsiHKCI CYCGRG 1 cut(s) 711
BslI CCNNNNNNNGG 2 cut(s) 516, 1042
BsmAI GTCTC 3 cut(s) 22, 172, 1005
BsmBI CGTCTC 3 cut(s) 22, 172, 1005
BsnI GGCC 3 cut(s) 520, 1021, 1087
BsoBI CYCGRG 1 cut(s) 711
Bsp1720I GCTNAGC 1 cut(s) 612
Bsp19I CCATGG 1 cut(s) 579
BspACI CCGC 1 cut(s) 1223
BspANI GGCC 3 cut(s) 520, 1021, 1087
BspDI ATCGAT 2 cut(s) 39, 189
BspLI GGNNCC 2 cut(s) 265, 1167
BspPI GGATC 4 cut(s) 617, 1005, 1160, 1173
BsrI ACTGG 1 cut(s) 549
BssECI CCNNGG 3 cut(s) 156, 579, 791
BssT1I CCWWGG 2 cut(s) 579, 791
Bst2UI CCWGG 1 cut(s) 770
Bst4CI ACNGT 6 cut(s) 7, 16, 92, 157, 166, 1257
BstAPI GCANNNNNTGC 2 cut(s) 221, 1196
BstBAI YACGTR 1 cut(s) 662
BstC8I GCNNGC 1 cut(s) 708
BstDEI CTNAG 3 cut(s) 287, 612, 947
BstDSI CCRYGG 2 cut(s) 156, 579
BstENI CCTNNNNNAGG 1 cut(s) 1040
BstF5I GGATG 4 cut(s) 729, 998, 1064, 1111
BstHHI GCGC 1 cut(s) 601
BstMAI GTCTC 3 cut(s) 22, 172, 1005
BstMWI GCNNNNNNNGC 3 cut(s) 221, 926, 1196
BstNI CCWGG 1 cut(s) 770
BstNSI RCATGY 4 cut(s) 473, 706, 956, 1184
BstSCI CCNGG 1 cut(s) 768
BstV1I GCAGC 2 cut(s) 603, 1202
BstV2I GAAGAC 3 cut(s) 119, 443, 896
BstX2I RGATCY 3 cut(s) 997, 1165, 1332
BstYI RGATCY 3 cut(s) 997, 1165, 1332
Bsu15I ATCGAT 2 cut(s) 39, 189
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 3 cut(s) 520, 1021, 1087
BsuTUI ATCGAT 2 cut(s) 39, 189
BtgI CCRYGG 2 cut(s) 156, 579
BtrI CACGTC 1 cut(s) 1015
BtsCI GGATG 4 cut(s) 729, 998, 1064, 1111
BtsIMutI CAGTG 2 cut(s) 97, 1262
Cac8I GCNNGC 1 cut(s) 708
CfoI GCGC 1 cut(s) 601
Cfr13I GGNCC 2 cut(s) 264, 1020
ClaI ATCGAT 2 cut(s) 39, 189
Csp6I GTAC 2 cut(s) 585, 935
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 8 cut(s) 470, 496, 580, 703, 953, 1181, 1215, 1311
CviQI GTAC 2 cut(s) 585, 935
DdeI CTNAG 3 cut(s) 287, 612, 947
DraI TTTAAA 1 cut(s) 808
DraIII CACNNNGTG 2 cut(s) 481, 665
Eco130I CCWWGG 2 cut(s) 579, 791
Eco47I GGWCC 1 cut(s) 264
Eco57I CTGAAG 2 cut(s) 455, 1022
Eco88I CYCGRG 1 cut(s) 711
EcoNI CCTNNNNNAGG 1 cut(s) 1040
EcoO109I RGGNCCY 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 768
EcoT14I CCWWGG 2 cut(s) 579, 791
ErhI CCWWGG 2 cut(s) 579, 791
Esp3I CGTCTC 3 cut(s) 22, 172, 1005
FaeI CATG 8 cut(s) 473, 499, 583, 706, 956, 1184, 1218, 1314
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 8 cut(s) 469, 495, 579, 702, 952, 1180, 1214, 1310
FbaI TGATCA 2 cut(s) 304, 454
Fnu4HI GCNGC 2 cut(s) 617, 1191
FokI GGATG 4 cut(s) 716, 1005, 1071, 1098
Fsp4HI GCNGC 2 cut(s) 617, 1191
FspBI CTAG 6 cut(s) 77, 374, 602, 695, 813, 840
GlaI GCGC 1 cut(s) 600
GluI GCNGC 2 cut(s) 617, 1191
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 3 cut(s) 520, 1021, 1087
HhaI GCGC 1 cut(s) 601
Hin1II CATG 8 cut(s) 473, 499, 583, 706, 956, 1184, 1218, 1314
Hin6I GCGC 1 cut(s) 599
HinP1I GCGC 1 cut(s) 599
HincII GTYRAC 2 cut(s) 821, 848
HindII GTYRAC 2 cut(s) 821, 848
HinfI GANTC 5 cut(s) 80, 651, 716, 858, 1249
HphI GGTGA 1 cut(s) 1258
Hpy166II GTNNAC 6 cut(s) 475, 587, 821, 848, 935, 958
Hpy188I TCNGA 6 cut(s) 85, 435, 454, 687, 883, 1041
Hpy188III TCNNGA 6 cut(s) 149, 249, 368, 374, 695, 1027
Hpy8I GTNNAC 6 cut(s) 475, 587, 821, 848, 935, 958
HpyAV CCTTC 6 cut(s) 682, 1036, 1046, 1048, 1093, 1098
HpyCH4III ACNGT 6 cut(s) 7, 16, 92, 157, 166, 1257
HpyCH4IV ACGT 3 cut(s) 533, 661, 1014
HpyCH4V TGCA 8 cut(s) 31, 181, 224, 466, 629, 929, 940, 1190
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 926, 1196
HpyF3I CTNAG 3 cut(s) 287, 612, 947
HpySE526I ACGT 3 cut(s) 533, 661, 1014
Hsp92II CATG 8 cut(s) 473, 499, 583, 706, 956, 1184, 1218, 1314
HspAI GCGC 1 cut(s) 599
Ksp22I TGATCA 2 cut(s) 304, 454
LmnI GCTCC 2 cut(s) 917, 1142
Lsp1109I GCAGC 2 cut(s) 603, 1202
LweI GCATC 2 cut(s) 840, 1186
MaeI CTAG 6 cut(s) 77, 374, 602, 695, 813, 840
MaeII ACGT 3 cut(s) 533, 661, 1014
MaeIII GTNAC 2 cut(s) 414, 1174
MboII GAAGA 7 cut(s) 124, 237, 437, 448, 692, 901, 958
MflI RGATCY 3 cut(s) 997, 1165, 1332
MluCI AATT 8 cut(s) 24, 174, 201, 300, 308, 1064, 1124, 1303
MlyI GAGTC 1 cut(s) 660
MnlI CCTC 5 cut(s) 151, 249, 510, 908, 1011
MseI TTAA 5 cut(s) 539, 807, 972, 986, 1326
MslI CAYNNNNRTG 2 cut(s) 500, 1181
MspR9I CCNGG 1 cut(s) 770
MvaI CCWGG 1 cut(s) 770
MwoI GCNNNNNNNGC 3 cut(s) 221, 926, 1196
NcoI CCATGG 1 cut(s) 579
NlaIII CATG 8 cut(s) 473, 499, 583, 706, 956, 1184, 1218, 1314
NlaIV GGNNCC 2 cut(s) 265, 1167
NmuCI GTSAC 2 cut(s) 414, 1174
NspI RCATGY 4 cut(s) 473, 706, 956, 1184
OliI CACNNNNGTG 1 cut(s) 1181
PciI ACATGT 2 cut(s) 469, 1180
PcsI WCGNNNNNNNCGW 2 cut(s) 1011, 1020
PfeI GAWTC 4 cut(s) 80, 716, 858, 1249
PkrI GCNGC 2 cut(s) 618, 1192
PleI GAGTC 1 cut(s) 659
PpsI GAGTC 1 cut(s) 659
Ppu21I YACGTR 1 cut(s) 662
PpuMI RGGWCCY 1 cut(s) 264
PscI ACATGT 2 cut(s) 469, 1180
Psp5II RGGWCCY 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 768
PspGI CCWGG 1 cut(s) 768
PspN4I GGNNCC 2 cut(s) 265, 1167
PspPI GGNCC 2 cut(s) 264, 1020
PspPPI RGGWCCY 1 cut(s) 264
PsuI RGATCY 3 cut(s) 997, 1165, 1332
RsaI GTAC 2 cut(s) 586, 936
RsaNI GTAC 2 cut(s) 585, 935
RseI CAYNNNNRTG 2 cut(s) 500, 1181
SaqAI TTAA 5 cut(s) 539, 807, 972, 986, 1326
SatI GCNGC 2 cut(s) 617, 1191
Sau96I GGNCC 2 cut(s) 264, 1020
SchI GAGTC 1 cut(s) 660
ScrFI CCNGG 1 cut(s) 770
SfaNI GCATC 2 cut(s) 840, 1186
SinI GGWCC 1 cut(s) 264
SmiMI CAYNNNNRTG 2 cut(s) 500, 1181
Sse9I AATT 8 cut(s) 24, 174, 201, 300, 308, 1064, 1124, 1303
SsiI CCGC 1 cut(s) 1223
SspMI CTAG 6 cut(s) 77, 374, 602, 695, 813, 840
StyD4I CCNGG 1 cut(s) 768
StyI CCWWGG 2 cut(s) 579, 791
TaaI ACNGT 6 cut(s) 7, 16, 92, 157, 166, 1257
TaiI ACGT 3 cut(s) 536, 664, 1017
TaqI TCGA 8 cut(s) 39, 104, 189, 239, 981, 1005, 1154, 1201
TaqII GACCGA 1 cut(s) 908
TasI AATT 8 cut(s) 24, 174, 201, 300, 308, 1064, 1124, 1303
TatI WGTACW 1 cut(s) 934
TfiI GAWTC 4 cut(s) 80, 716, 858, 1249
Tru1I TTAA 5 cut(s) 539, 807, 972, 986, 1326
Tru9I TTAA 5 cut(s) 539, 807, 972, 986, 1326
TscAI CASTG 2 cut(s) 97, 1262
TseFI GTSAC 2 cut(s) 414, 1174
TseI GCWGC 2 cut(s) 616, 1190
Tsp45I GTSAC 2 cut(s) 414, 1174
TspDTI ATGAA 5 cut(s) 347, 512, 693, 912, 990
TspRI CASTG 2 cut(s) 97, 1262
VpaK11BI GGWCC 1 cut(s) 264
XagI CCTNNNNNAGG 1 cut(s) 1040
XapI RAATTY 1 cut(s) 201
XbaI TCTAGA 2 cut(s) 373, 694
XceI RCATGY 4 cut(s) 473, 706, 956, 1184
XspI CTAG 6 cut(s) 77, 374, 602, 695, 813, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.