Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Reverse (-)

57148978 .. 57149695

Gene Structure 718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030183

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGTAATCGAGCCTATGCGCTTGAAATGGCTAAGCTGCTTGACCCTGGAAATCAAATCTTTGGTGGTAGAGTCATATCGCGTGGTGATAGCACAGAAACAGATCGAAAGGGTCTAGATGTCCTGCTTGCAAGAGATTCTGCTGTTGTGATCCTTGATGATACGAAAGATGTATGGACAACTACCAACCAGGACAATACCGATGAATGTGATCGGTTTGGAGGAGCTTATCTTGCAAATGTACTCCAACTTCTTAAGCATATTCACACCATATTCTTTAATGAAGTTGAGTTACAAGGGTGGGATCTTATCGACAGAGATGCTGATACTCATCCTTTGTGGAAGATGACGGAGGAGCTAGGCGCTACTTGTTCAACGCAAGTTGATCCATCAGTCACACATGTGGTTGCAGCCAATGCCCGAACACAGAAATCGTGTTGGGCGGTTAAAGAAGGAAAATTTTTGGTGAATCCCCAGTGGATTCATACTGCAAATTTTATGTGGCAAAGGCAACCTGAAGATAATTTCCCGTCATTAGTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

182

Amino Acids

20.43

Weight (kDa)

5.02

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTCB-BRCT	PF12738	108 - 160	3.1e-07	twin BRCT domain
BRCT	PF00533	115 - 161	5.5e-08	BRCA1 C Terminus (BRCT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	3 cut(s)	145, 312, 380
AcsI	RAATTY	2 cut(s)	458, 493
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	1 cut(s)	243
AflII	CTTAAG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	2 cut(s)	26, 375
AjnI	CCWGG	2 cut(s)	46, 189
AleI	CACNNNNGTG	1 cut(s)	401
AluBI	AGCT	3 cut(s)	37, 227, 358
AluI	AGCT	3 cut(s)	37, 227, 358
AlwI	GGATC	3 cut(s)	145, 312, 380
ApeKI	GCWGC	2 cut(s)	37, 410
ApoI	RAATTY	2 cut(s)	458, 493
AspLEI	GCGC	2 cut(s)	22, 365
AsuHPI	GGTGA	2 cut(s)	98, 478
BarI	GAAGNNNNNNTAC	4 cut(s)	234, 266, 276, 308
BbvI	GCAGC	2 cut(s)	24, 422
BccI	CCATC	1 cut(s)	397
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciT130I	CCWGG	2 cut(s)	48, 191
BfaI	CTAG	2 cut(s)	116, 359
BfoI	RGCGCY	1 cut(s)	366
BfrI	CTTAAG	1 cut(s)	254
BisI	GCNGC	2 cut(s)	38, 411
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	2 cut(s)	39, 412
Bme1390I	CCNGG	2 cut(s)	48, 191
BmrFI	CCNGG	2 cut(s)	48, 191
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	1 cut(s)	310
BmuI	ACTGGG	1 cut(s)	469
Bpu1102I	GCTNAGC	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	475
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	48, 191
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	2 cut(s)	237, 368
BseXI	GCAGC	2 cut(s)	24, 422
Bsh1236I	CGCG	1 cut(s)	82
Bsp143I	GATC	5 cut(s)	103, 150, 211, 304, 385
Bsp1720I	GCTNAGC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	443
BspFNI	CGCG	1 cut(s)	82
BspPI	GGATC	3 cut(s)	145, 312, 380
BspTI	CTTAAG	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	5 cut(s)	103, 150, 211, 304, 385
Bst2UI	CCWGG	2 cut(s)	48, 191
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	331
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	366
BstHHI	GCGC	2 cut(s)	22, 365
BstKTI	GATC	5 cut(s)	106, 153, 214, 307, 388
BstMBI	GATC	5 cut(s)	103, 150, 211, 304, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 416
BstNI	CCWGG	2 cut(s)	48, 191
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	46, 189
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	24, 422
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	482
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	2 cut(s)	22, 365
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	1 cut(s)	401
CviJI	RGCY	6 cut(s)	14, 32, 37, 227, 358, 413
CviKI_1	RGCY	6 cut(s)	14, 32, 37, 227, 358, 413
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	5 cut(s)	105, 152, 213, 306, 387
DpnII	GATC	5 cut(s)	103, 150, 211, 304, 385
Eco57I	CTGAAG	1 cut(s)	537
EcoRII	CCWGG	2 cut(s)	46, 189
FaeI	CATG	1 cut(s)	404
FaiI	YATR	8 cut(s)	18, 77, 175, 261, 272, 402, 486, 500
FatI	CATG	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	38, 411
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	2 cut(s)	38, 411
FspBI	CTAG	2 cut(s)	116, 359
GlaI	GCGC	2 cut(s)	21, 364
GluI	GCNGC	2 cut(s)	38, 411
HaeII	RGCGCY	1 cut(s)	366
HhaI	GCGC	2 cut(s)	22, 365
Hin1II	CATG	1 cut(s)	404
Hin6I	GCGC	2 cut(s)	20, 363
HinP1I	GCGC	2 cut(s)	20, 363
HinfI	GANTC	4 cut(s)	72, 137, 469, 481
HphI	GGTGA	2 cut(s)	98, 478
Hpy188III	TCNNGA	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	446
HpyCH4V	TGCA	4 cut(s)	131, 236, 410, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 416
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	404
HspAI	GCGC	2 cut(s)	20, 363
Kzo9I	GATC	5 cut(s)	103, 150, 211, 304, 385
LmnI	GCTCC	2 cut(s)	224, 355
LpnPI	CCDG	7 cut(s)	33, 60, 137, 176, 203, 488, 528
Lsp1109I	GCAGC	2 cut(s)	24, 422
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	116, 359
MaeIII	GTNAC	2 cut(s)	291, 394
MalI	GATC	5 cut(s)	105, 152, 213, 306, 387
MboI	GATC	5 cut(s)	103, 150, 211, 304, 385
MboII	GAAGA	2 cut(s)	355, 530
MflI	RGATCY	1 cut(s)	304
MluCI	AATT	3 cut(s)	458, 493, 523
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	2 cut(s)	215, 346
MseI	TTAA	4 cut(s)	255, 279, 447, 544
MslI	CAYNNNNRTG	1 cut(s)	401
MspCI	CTTAAG	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	48, 191
MvaI	CCWGG	2 cut(s)	48, 191
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	233, 416
NdeII	GATC	5 cut(s)	103, 150, 211, 304, 385
NlaIII	CATG	1 cut(s)	404
NmuCI	GTSAC	1 cut(s)	394
NspI	RCATGY	1 cut(s)	404
OliI	CACNNNNGTG	1 cut(s)	401
PciI	ACATGT	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	137, 469, 481
PkrI	GCNGC	2 cut(s)	39, 412
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PscI	ACATGT	1 cut(s)	400
Psp6I	CCWGG	2 cut(s)	46, 189
PspGI	CCWGG	2 cut(s)	46, 189
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	4 cut(s)	255, 279, 447, 544
SatI	GCNGC	2 cut(s)	38, 411
Sau3AI	GATC	5 cut(s)	103, 150, 211, 304, 385
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	2 cut(s)	48, 191
SetI	ASST	4 cut(s)	39, 229, 360, 517
SfaNI	GCATC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	458, 493, 523
SsiI	CCGC	1 cut(s)	443
SspMI	CTAG	2 cut(s)	116, 359
StyD4I	CCNGG	2 cut(s)	46, 189
TaqI	TCGA	3 cut(s)	10, 106, 312
TasI	AATT	3 cut(s)	458, 493, 523
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	3 cut(s)	137, 469, 481
Tru1I	TTAA	4 cut(s)	255, 279, 447, 544
Tru9I	TTAA	4 cut(s)	255, 279, 447, 544
TscAI	CASTG	1 cut(s)	482
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	2 cut(s)	37, 410
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	4 cut(s)	219, 297, 473, 530
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	482
Vha464I	CTTAAG	1 cut(s)	254
XapI	RAATTY	2 cut(s)	458, 493
XbaI	TCTAGA	1 cut(s)	115
XceI	RCATGY	1 cut(s)	404
XspI	CTAG	2 cut(s)	116, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.