Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

59552330 .. 59556956

Gene Structure 4627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTGTTTTCTTTGTGGCCAGAGGTTGATTGAGCAGTCTGGTGTGACATTTGGGTACATACACAAGGGATTGAGACTTAATAATGATGAAATCTACCGGTTACGCAACACAGACATTAAGAAATCGCTAAATAATAAGAAACTTTATTTGGTACTGGATCTTGATCATACACTGCTAAATTCCACCCAGCTGAATCATATGACGGCTGAAGAAGAATATTTGATCAGCCCACCAGATTCTCTGCCAGATGAGTTGAAAGGCAGCCTGTTCAGACTGGACTTTATGCATATGATGACCAAGTTAAGGCCCTTCATTAGGACATTTTTGAAGGAAGCCAGTGAAATGTTTGAAATGTACATGTACACTATTGGTGATCGAGCCTATGCATTGGAAATGGCCAAGTTGCTTGATCCCAAAAAAGAGTACTTTGGTGATAGGATGATCACGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

150

Amino Acids

17.76

Weight (kDa)

6.91

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	49 - 148	2.5e-16	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	448
AclWI	GGATC	2 cut(s)	165, 404
AcoI	YGGCCR	2 cut(s)	16, 396
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	5 cut(s)	56, 153, 356, 362, 425
AfiI	CCNNNNNNNGG	2 cut(s)	303, 315
AflIII	ACRYGT	1 cut(s)	357
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	3 cut(s)	256, 328, 350
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	2 cut(s)	165, 404
AoxI	GGCC	3 cut(s)	16, 305, 396
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	178
AsiGI	ACCGGT	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	383, 443
BalI	TGGCCA	2 cut(s)	18, 398
BbvI	GCAGC	1 cut(s)	273
BceAI	ACGGC	1 cut(s)	219
BclI	TGATCA	3 cut(s)	163, 222, 441
BcoDI	GTCTC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
BmcAI	AGTACT	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	306
BsaBI	GATNNNNATC	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 315
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	3 cut(s)	159, 279, 336
Bse8I	GATNNNNATC	1 cut(s)	162
BseGI	GGATG	1 cut(s)	444
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	303, 315
BseNI	ACTGG	3 cut(s)	159, 279, 336
BseXI	GCAGC	1 cut(s)	273
BseYI	CCCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	448
BshFI	GGCC	3 cut(s)	18, 307, 398
BshTI	ACCGGT	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	303, 315
BsmAI	GTCTC	1 cut(s)	67
BsnI	GGCC	3 cut(s)	18, 307, 398
Bsp1407I	TGTACA	2 cut(s)	354, 360
Bsp143I	GATC	6 cut(s)	157, 163, 222, 373, 409, 441
BspANI	GGCC	3 cut(s)	18, 307, 398
BspFNI	CGCG	1 cut(s)	448
BspPI	GGATC	2 cut(s)	165, 404
BsrFI	RCCGGY	1 cut(s)	96
BsrGI	TGTACA	2 cut(s)	354, 360
BsrI	ACTGG	3 cut(s)	159, 279, 336
BssAI	RCCGGY	1 cut(s)	96
BssMI	GATC	6 cut(s)	157, 163, 222, 373, 409, 441
BstAUI	TGTACA	2 cut(s)	354, 360
BstENI	CCTNNNNNAGG	1 cut(s)	313
BstF5I	GGATG	1 cut(s)	444
BstFNI	CGCG	1 cut(s)	448
BstKTI	GATC	6 cut(s)	160, 166, 225, 376, 412, 444
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	6 cut(s)	157, 163, 222, 373, 409, 441
BstNSI	RCATGY	1 cut(s)	361
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	3 cut(s)	18, 307, 398
BtsCI	GGATG	1 cut(s)	444
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	2 cut(s)	170, 343
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	306
Csp6I	GTAC	5 cut(s)	55, 152, 355, 361, 424
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	9 cut(s)	18, 190, 206, 228, 264, 307, 335, 380, 398
CviKI_1	RGCY	9 cut(s)	18, 190, 206, 228, 264, 307, 335, 380, 398
CviQI	GTAC	5 cut(s)	55, 152, 355, 361, 424
DpnI	GATC	6 cut(s)	159, 165, 224, 375, 411, 443
DpnII	GATC	6 cut(s)	157, 163, 222, 373, 409, 441
EaeI	YGGCCR	2 cut(s)	16, 396
Eco57I	CTGAAG	1 cut(s)	228
EcoNI	CCTNNNNNAGG	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	306
EcoT22I	ATGCAT	2 cut(s)	288, 388
FaeI	CATG	1 cut(s)	361
FaiI	YATR	9 cut(s)	59, 168, 198, 200, 284, 288, 290, 359, 384
FatI	CATG	1 cut(s)	357
FauNDI	CATATG	2 cut(s)	198, 288
FbaI	TGATCA	3 cut(s)	163, 222, 441
Fnu4HI	GCNGC	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	262
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	3 cut(s)	18, 307, 398
HapII	CCGG	1 cut(s)	97
Hin1II	CATG	1 cut(s)	361
HinfI	GANTC	2 cut(s)	193, 236
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	2 cut(s)	383, 443
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	2 cut(s)	319, 322
HpyCH4V	TGCA	2 cut(s)	286, 386
Hsp92II	CATG	1 cut(s)	361
Ksp22I	TGATCA	3 cut(s)	163, 222, 441
Kzo9I	GATC	6 cut(s)	157, 163, 222, 373, 409, 441
Lsp1109I	GCAGC	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	43, 99
MalI	GATC	6 cut(s)	159, 165, 224, 375, 411, 443
MboI	GATC	6 cut(s)	157, 163, 222, 373, 409, 441
MboII	GAAGA	2 cut(s)	221, 224
MflI	RGATCY	1 cut(s)	157
MlsI	TGGCCA	2 cut(s)	18, 398
MluCI	AATT	1 cut(s)	178
MluNI	TGGCCA	2 cut(s)	18, 398
MnlI	CCTC	1 cut(s)	15
Mox20I	TGGCCA	2 cut(s)	18, 398
Mph1103I	ATGCAT	2 cut(s)	288, 388
MscI	TGGCCA	2 cut(s)	18, 398
MseI	TTAA	3 cut(s)	78, 117, 302
Msp20I	TGGCCA	2 cut(s)	18, 398
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	448
NdeI	CATATG	2 cut(s)	198, 288
NdeII	GATC	6 cut(s)	157, 163, 222, 373, 409, 441
NlaIII	CATG	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	2 cut(s)	288, 388
NspI	RCATGY	1 cut(s)	361
PciI	ACATGT	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	193, 236
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	263
PscI	ACATGT	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	190
RsaI	GTAC	5 cut(s)	56, 153, 356, 362, 425
RsaNI	GTAC	5 cut(s)	55, 152, 355, 361, 424
SaqAI	TTAA	3 cut(s)	78, 117, 302
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	6 cut(s)	157, 163, 222, 373, 409, 441
Sau96I	GGNCC	1 cut(s)	306
ScaI	AGTACT	1 cut(s)	425
SetI	ASST	2 cut(s)	26, 192
Sse9I	AATT	1 cut(s)	178
SspI	AATATT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	376
TasI	AATT	1 cut(s)	178
TatI	WGTACW	3 cut(s)	354, 360, 423
TfiI	GAWTC	2 cut(s)	193, 236
Tru1I	TTAA	3 cut(s)	78, 117, 302
Tru9I	TTAA	3 cut(s)	78, 117, 302
TscAI	CASTG	2 cut(s)	177, 343
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	102, 301
TspRI	CASTG	2 cut(s)	177, 343
XagI	CCTNNNNNAGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	361
ZrmI	AGTACT	1 cut(s)	425
Zsp2I	ATGCAT	2 cut(s)	288, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.