Rw6G005760

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
9192034 .. 9193251
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005760.1

Sequence Viewer

Length: 1218 bp
ATGAGTGTGGCTACCGTCTCTCCAATTTTGCACAACATAGATAACCTTGTTGGGTTTCTCAAGAGAGGACGAGGACAACAGGATTCTGATTACAGTCAACTAGAATTGATAGAGAGGAGAAAAAGGCGTAACATAATAGAGACGACTACTAATGAAGAAGCAAGATTTGCAGATGAGGAGAAATCCGGGTCTTCTGGAGTGAGATTTGGGTACTTACACAAGGGCTTAGGGCTTAATCATGATGAAATTGATCGTTTACGAAACGATAACACTAATATCTTATTGTTGCACCATAAGAAACTTCATTTAGTACTTGACCTAGACCACATCCTGCTGAATTCCACTTTCCTTGATAATATGTCACCAGACGAACAATATTTGAAGACTCAAACTCAATCTGATCATTCTCTGCAACATGTTCACATTGTGAACACTCCCGGTACGCAATTGATGACCAAGTTCAGGCCTTATATTATGACATTTTTAATGCAAGCTAGTCAAATGTTTGAGCTGTCCATTTACACCACGGGTAGTCGAGACTATGCGCTCGAAATGGCTAAGTTGCTTGATCCCAGAAATCAAATCTTTGGTGGTAGAGTGATCTCACGTAGCGAGAGCACAGAAGAAGATCGAAAGGGTCTAGATGCCCTGCTTGCCCGAGATTCTGCTGTTTTGATCCTTGATGATACAAAAGATGTATGGACAGTTGACAACCAGGATAATGTAATAATAATGCCAAGATACCATTTCTTTAGATCTAGTTGTCAACAATTTGGCCTCAGTAGTAAGCCTTATTCCGAGTTAAAGACTGATGAATGTGATCGGTATGGAGGAGCTGATCTTGCAAATGTGCTTCAACTTCTTAGGCACGTTCACTGCATCTTCTTTAATGAAGTCGAGATACAGGGTTGGGATCTTATCGACAGAGACGTGAGGCTTGTGTTGAAAATCCTTCAGAAGGAAGTCTTGAAGGGCTGTAAAATTGTTTTCAGCCATGTTTTCCCTTCAAATGTACAGGCTGATACTCATCCTTTGTGGAAGATGGCGGAGCAGTTAGGAGCTATTTGTTCAACACAAGTGGATCCAACAGTCACGTACATACGTGGTTGCAGCCGATGCTCGAACACAAAAATCTCGTTGGGCAGTAGAAGAAGGCAAGTTTTTGGTGAATCCGCAGTGGATTCATACTGCAAATTTCATGTGGCAAAAGCAACCTGA

Protein Analysis

405

Amino Acids

46.31

Weight (kDa)

6.6

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 102 - 249 5.8e-23 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000221)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58003 AT5G58003 AT5G58003
fragaria_vesca FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica MD09G1131300.v1.1
prunus_persica Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis pycom09g05350
rosa_chinensis RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 1046, 1173
AclWI GGATC 5 cut(s) 563, 670, 921, 1076, 1089
AcsI RAATTY 2 cut(s) 337, 1193
AcuI CTGAAG 1 cut(s) 938
AdeI CACNNNGTG 1 cut(s) 427
AfaI GTAC 5 cut(s) 212, 312, 442, 1014, 1097
AfiI CCNNNNNNNGG 2 cut(s) 462, 958
AflIII ACRYGT 1 cut(s) 415
AgsI TTSAA 6 cut(s) 382, 857, 946, 970, 1008, 1071
AjiI CACGTC 1 cut(s) 931
AjnI CCWGG 1 cut(s) 714
AluBI AGCT 4 cut(s) 494, 511, 836, 1061
AluI AGCT 4 cut(s) 494, 511, 836, 1061
Alw21I GWGCWC 1 cut(s) 620
Alw26I GTCTC 4 cut(s) 22, 134, 531, 921
AlwI GGATC 5 cut(s) 563, 670, 921, 1076, 1089
Ama87I CYCGRG 1 cut(s) 657
AoxI GGCC 2 cut(s) 464, 775
ApeKI GCWGC 1 cut(s) 1110
ApoI RAATTY 2 cut(s) 337, 1193
AspLEI GCGC 1 cut(s) 547
AsuC2I CCSGG 2 cut(s) 187, 438
AsuHPI GGTGA 2 cut(s) 354, 1178
AvaI CYCGRG 1 cut(s) 657
BamHI GGATCC 1 cut(s) 1081
BarI GAAGNNNNNNTAC 2 cut(s) 885, 917
BbsI GAAGAC 2 cut(s) 183, 389
Bbv12I GWGCWC 1 cut(s) 620
BbvI GCAGC 1 cut(s) 1122
BccI CCATC 1 cut(s) 1036
BciT130I CCWGG 1 cut(s) 716
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 2 cut(s) 187, 438
BcoDI GTCTC 4 cut(s) 22, 134, 531, 921
BfaI CTAG 5 cut(s) 101, 320, 495, 641, 759
BglII AGATCT 1 cut(s) 755
BisI GCNGC 1 cut(s) 1111
BlsI GCNGC 1 cut(s) 1112
BmcAI AGTACT 1 cut(s) 312
Bme1390I CCNGG 3 cut(s) 187, 438, 716
BmeT110I CYCGRG 1 cut(s) 657
BmgBI CACGTC 1 cut(s) 931
BmiI GGNNCC 1 cut(s) 1083
BmrFI CCNGG 3 cut(s) 187, 438, 716
BmsI GCATC 3 cut(s) 634, 888, 1106
BpiI GAAGAC 2 cut(s) 183, 389
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 2 cut(s) 187, 438
BsaAI YACGTR 3 cut(s) 608, 1095, 1103
BsaBI GATNNNNATC 1 cut(s) 1026
BsaJI CCNNGG 1 cut(s) 525
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 462, 958
Bse8I GATNNNNATC 1 cut(s) 1026
BseBI CCWGG 1 cut(s) 716
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 2 cut(s) 327, 1027
BseJI GATNNNNATC 1 cut(s) 1026
BseLI CCNNNNNNNGG 2 cut(s) 462, 958
BseMII CTCAG 1 cut(s) 793
BseRI GAGGAG 3 cut(s) 130, 191, 846
BseXI GCAGC 1 cut(s) 1122
BshFI GGCC 2 cut(s) 466, 777
BsiHKAI GWGCWC 1 cut(s) 620
BsiHKCI CYCGRG 1 cut(s) 657
BsiSI CCGG 2 cut(s) 186, 438
BslI CCNNNNNNNGG 2 cut(s) 462, 958
BsmAI GTCTC 4 cut(s) 22, 134, 531, 921
BsmBI CGTCTC 3 cut(s) 22, 134, 921
BsnI GGCC 2 cut(s) 466, 777
BsoBI CYCGRG 1 cut(s) 657
Bsp1286I GDGCHC 1 cut(s) 620
Bsp1407I TGTACA 1 cut(s) 1012
BspACI CCGC 2 cut(s) 1046, 1173
BspANI GGCC 2 cut(s) 466, 777
BspCNI CTCAG 1 cut(s) 792
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 1083
BspPI GGATC 5 cut(s) 563, 670, 921, 1076, 1089
BsrGI TGTACA 1 cut(s) 1012
BssECI CCNNGG 1 cut(s) 525
Bst2UI CCWGG 1 cut(s) 716
Bst4CI ACNGT 4 cut(s) 16, 95, 706, 1090
BstAPI GCANNNNNTGC 2 cut(s) 167, 1116
BstAUI TGTACA 1 cut(s) 1012
BstBAI YACGTR 3 cut(s) 608, 1095, 1103
BstC8I GCNNGC 2 cut(s) 492, 654
BstDEI CTNAG 4 cut(s) 226, 558, 779, 863
BstDSI CCRYGG 1 cut(s) 525
BstENI CCTNNNNNAGG 1 cut(s) 956
BstF5I GGATG 2 cut(s) 327, 1027
BstHHI GCGC 1 cut(s) 547
BstMAI GTCTC 4 cut(s) 22, 134, 531, 921
BstMWI GCNNNNNNNGC 4 cut(s) 167, 653, 842, 1116
BstNI CCWGG 1 cut(s) 716
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 3 cut(s) 185, 436, 714
BstV1I GCAGC 1 cut(s) 1122
BstV2I GAAGAC 2 cut(s) 183, 389
BstX2I RGATCY 3 cut(s) 755, 913, 1081
BstYI RGATCY 3 cut(s) 755, 913, 1081
BsuRI GGCC 2 cut(s) 466, 777
BtgI CCRYGG 1 cut(s) 525
BtrI CACGTC 1 cut(s) 931
BtsCI GGATG 2 cut(s) 327, 1027
BtsI GCAGTG 2 cut(s) 874, 1182
BtsIMutI CAGTG 2 cut(s) 874, 1182
Cac8I GCNNGC 2 cut(s) 492, 654
CciI TCATGA 1 cut(s) 238
CfoI GCGC 1 cut(s) 547
Csp6I GTAC 5 cut(s) 211, 311, 441, 1013, 1096
CspCI CAANNNNNGTGG 4 cut(s) 331, 366, 1059, 1094
CviAII CATG 4 cut(s) 239, 416, 995, 1199
CviQI GTAC 5 cut(s) 211, 311, 441, 1013, 1096
DdeI CTNAG 4 cut(s) 226, 558, 779, 863
DraIII CACNNNGTG 1 cut(s) 427
EciI GGCGGA 1 cut(s) 1061
Eco147I AGGCCT 1 cut(s) 466
Eco57I CTGAAG 1 cut(s) 938
Eco88I CYCGRG 1 cut(s) 657
EcoNI CCTNNNNNAGG 1 cut(s) 956
EcoRI GAATTC 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 714
Esp3I CGTCTC 3 cut(s) 22, 134, 921
FaeI CATG 4 cut(s) 242, 419, 998, 1202
FalI AAGNNNNNCTT 2 cut(s) 950, 982
FatI CATG 4 cut(s) 238, 415, 994, 1198
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 1111
FokI GGATG 2 cut(s) 314, 1014
Fsp4HI GCNGC 1 cut(s) 1111
FspBI CTAG 5 cut(s) 101, 320, 495, 641, 759
GlaI GCGC 1 cut(s) 546
GluI GCNGC 1 cut(s) 1111
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 2 cut(s) 466, 777
HapII CCGG 2 cut(s) 186, 438
HhaI GCGC 1 cut(s) 547
Hin1II CATG 4 cut(s) 242, 419, 998, 1202
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HincII GTYRAC 3 cut(s) 98, 709, 767
HindII GTYRAC 3 cut(s) 98, 709, 767
HinfI GANTC 5 cut(s) 83, 385, 662, 1169, 1181
HpaII CCGG 2 cut(s) 186, 438
HphI GGTGA 2 cut(s) 354, 1178
Hpy166II GTNNAC 7 cut(s) 98, 257, 421, 430, 709, 767, 874
Hpy188I TCNGA 4 cut(s) 88, 400, 799, 957
Hpy188III TCNNGA 7 cut(s) 61, 195, 239, 536, 641, 898, 967
Hpy8I GTNNAC 7 cut(s) 98, 257, 421, 430, 709, 767, 874
HpyAV CCTTC 5 cut(s) 952, 962, 964, 1014, 1146
HpyCH4III ACNGT 4 cut(s) 16, 95, 706, 1090
HpyCH4IV ACGT 5 cut(s) 607, 870, 930, 1094, 1102
HpyCH4V TGCA 9 cut(s) 31, 170, 289, 412, 490, 845, 879, 1110, 1191
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 653, 842, 1116
HpyF3I CTNAG 4 cut(s) 226, 558, 779, 863
HpySE526I ACGT 5 cut(s) 607, 870, 930, 1094, 1102
Hsp92II CATG 4 cut(s) 242, 419, 998, 1202
HspAI GCGC 1 cut(s) 545
Ksp22I TGATCA 1 cut(s) 400
LmnI GCTCC 3 cut(s) 833, 1048, 1058
Lsp1109I GCAGC 1 cut(s) 1122
LweI GCATC 3 cut(s) 634, 888, 1106
MaeI CTAG 5 cut(s) 101, 320, 495, 641, 759
MaeII ACGT 5 cut(s) 607, 870, 930, 1094, 1102
MaeIII GTNAC 3 cut(s) 128, 360, 1090
MboII GAAGA 8 cut(s) 167, 183, 394, 635, 638, 874, 1051, 1161
MfeI CAATTG 1 cut(s) 446
MflI RGATCY 3 cut(s) 755, 913, 1081
MhlI GDGCHC 1 cut(s) 620
MluCI AATT 8 cut(s) 24, 104, 246, 337, 446, 770, 981, 1193
MlyI GAGTC 1 cut(s) 379
MmeI TCCRAC 1 cut(s) 1109
MnlI CCTC 7 cut(s) 59, 65, 108, 169, 788, 824, 927
MseI TTAA 4 cut(s) 234, 485, 803, 888
MspI CCGG 2 cut(s) 186, 438
MspR9I CCNGG 3 cut(s) 187, 438, 716
MunI CAATTG 1 cut(s) 446
MvaI CCWGG 1 cut(s) 716
MwoI GCNNNNNNNGC 4 cut(s) 167, 653, 842, 1116
NciI CCSGG 2 cut(s) 187, 438
NlaIII CATG 4 cut(s) 242, 419, 998, 1202
NlaIV GGNNCC 1 cut(s) 1083
NmuCI GTSAC 2 cut(s) 360, 1090
NspI RCATGY 1 cut(s) 419
PagI TCATGA 1 cut(s) 238
PceI AGGCCT 1 cut(s) 466
PciI ACATGT 1 cut(s) 415
PcsI WCGNNNNNNNCGW 1 cut(s) 927
PfeI GAWTC 4 cut(s) 83, 662, 1169, 1181
PkrI GCNGC 1 cut(s) 1112
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Ppu21I YACGTR 3 cut(s) 608, 1095, 1103
PscI ACATGT 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 714
PspGI CCWGG 1 cut(s) 714
PspN4I GGNNCC 1 cut(s) 1083
PsuI RGATCY 3 cut(s) 755, 913, 1081
RsaI GTAC 5 cut(s) 212, 312, 442, 1014, 1097
RsaNI GTAC 5 cut(s) 211, 311, 441, 1013, 1096
SaqAI TTAA 4 cut(s) 234, 485, 803, 888
SatI GCNGC 1 cut(s) 1111
ScaI AGTACT 1 cut(s) 312
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 3 cut(s) 187, 438, 716
SduI GDGCHC 1 cut(s) 620
SfaNI GCATC 3 cut(s) 634, 888, 1106
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 8 cut(s) 24, 104, 246, 337, 446, 770, 981, 1193
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 2 cut(s) 1046, 1173
SspI AATATT 1 cut(s) 377
SspMI CTAG 5 cut(s) 101, 320, 495, 641, 759
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 3 cut(s) 185, 436, 714
TaaI ACNGT 4 cut(s) 16, 95, 706, 1090
TaiI ACGT 5 cut(s) 610, 873, 933, 1097, 1105
TaqI TCGA 6 cut(s) 535, 549, 631, 897, 921, 1121
TasI AATT 8 cut(s) 24, 104, 246, 337, 446, 770, 981, 1193
TatI WGTACW 2 cut(s) 310, 1012
TfiI GAWTC 4 cut(s) 83, 662, 1169, 1181
Tru1I TTAA 4 cut(s) 234, 485, 803, 888
Tru9I TTAA 4 cut(s) 234, 485, 803, 888
TscAI CASTG 2 cut(s) 881, 1182
TseFI GTSAC 2 cut(s) 360, 1090
TseI GCWGC 1 cut(s) 1110
Tsp45I GTSAC 2 cut(s) 360, 1090
TspDTI ATGAA 7 cut(s) 168, 258, 293, 828, 906, 1173, 1187
TspRI CASTG 2 cut(s) 881, 1182
XagI CCTNNNNNAGG 1 cut(s) 956
XapI RAATTY 2 cut(s) 337, 1193
XbaI TCTAGA 1 cut(s) 640
XceI RCATGY 1 cut(s) 419
XspI CTAG 5 cut(s) 101, 320, 495, 641, 759
ZrmI AGTACT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.