RchiOBHm_Chr7g0234711

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
59410423 .. 59415942
5520 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21033

Sequence Viewer

Length: 993 bp
ATGGTTCTCCTGATGAGTCTGGCCGAGTCTCCAGTACACTCTTCTAGCATTGATGACTTTGCTGGGTTGCTTGAGAGAGAACTACAGTCCGGTTCTTTGGAGTCATCAACAGGGGATGAAGATGAAGAAGATAAAGAAGCTGATGGTGATGATGATGGCAGTGATGTTGAAACTGAGAGCAGGATAAAAAGGCGCAAAGGAGATAATTTGGAAAGCGTAGAGGAAACTAATGGGTCGATTTCACAAGGACGTCCAGAACAAAAGTCAGAAGCATCTGCAACGGAGGATATGTTGATTGAGCAGTCCGGTGTGACATTTGGGTACATACACAGGGGATTGAGACTTAATAATGATGAAATCGACCGGTTATGCAACACAGACATTAAGAAATCGCTAAATAATAAGAAACTTTATTTGGTACTGGATCTTGATCATACACTGCTAAATTCCACCCAGCTGAATCATATGACGGCAGAAGAAGAATATTTGATGAGGCCACCAGATTCGCTGCCAGATATTGCATGGATAAGGCACAAGGACAATCTAATTTTGACGGAAAGATATCATTTCTTTAGATCTAGTTGTGCCCAATTTGGGTTCACTGGTGAGTCTCTTTCAGAGTTGAAGAGTGATGAGAGTGAGCCTGAAGGAGCTCTTGCAAATGTTCTTGACCTTCTTAAGCGAATCCACAAGTTTTTCTTCTATGAATTGGGAGGCAATCTTATAGATAGAGACGTAAGGCAGGAAGTCTTGAAGGGGTGCAAAGTTGTTTTCAGCCGTATAATTCCTTCAAAAGTCCAGGCTGATACTTATCATCACCTGTGGAAGATGGCGGAGCAGCTGGGAGCCATATGTTCAACCGAAGTGGATTCATCAGTGACCCATGTAGTTGCATTATGTGGCGAAAGCAACCTGAAGACGAAGTTTCCTGTCACTGAAATGAAATCGAACACACCCAAAGCCAGTGATTTGCTATTTTTTGGATATGACTAA

Protein Analysis

330

Amino Acids

37.1

Weight (kDa)

4.77

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000221)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58003 AT5G58003 AT5G58003
fragaria_vesca FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica MD09G1131300.v1.1
prunus_persica Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis pycom09g05350
rosa_chinensis RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 253
AciI CCGC 1 cut(s) 833
AclWI GGATC 1 cut(s) 432
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 2 cut(s) 666, 935
AcyI GRCGYC 1 cut(s) 250
AfaI GTAC 3 cut(s) 36, 323, 420
AfiI CCNNNNNNNGG 1 cut(s) 594
AflII CTTAAG 1 cut(s) 677
AgeI ACCGGT 1 cut(s) 363
AgsI TTSAA 5 cut(s) 170, 625, 754, 792, 858
AjnI CCWGG 1 cut(s) 798
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 4 cut(s) 140, 457, 653, 841
AluI AGCT 4 cut(s) 140, 457, 653, 841
Alw21I GWGCWC 1 cut(s) 655
Alw26I GTCTC 4 cut(s) 33, 334, 615, 726
AlwI GGATC 1 cut(s) 432
AoxI GGCC 2 cut(s) 21, 494
ApeKI GCWGC 2 cut(s) 508, 838
ApoI RAATTY 1 cut(s) 445
AsiGI ACCGGT 1 cut(s) 363
AspLEI GCGC 1 cut(s) 195
AsuHPI GGTGA 3 cut(s) 158, 617, 809
BaeGI GKGCMC 1 cut(s) 589
BanII GRGCYC 1 cut(s) 655
BarI GAAGNNNNNNTAC 2 cut(s) 772, 804
BbsI GAAGAC 1 cut(s) 923
Bbv12I GWGCWC 1 cut(s) 655
BbvI GCAGC 2 cut(s) 495, 850
BccI CCATC 3 cut(s) 137, 149, 823
BceAI ACGGC 2 cut(s) 486, 762
BciT130I CCWGG 1 cut(s) 800
BclI TGATCA 1 cut(s) 430
BcoDI GTCTC 4 cut(s) 33, 334, 615, 726
BfaI CTAG 2 cut(s) 45, 579
BfmI CTRYAG 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 677
BglII AGATCT 1 cut(s) 575
BisI GCNGC 2 cut(s) 509, 839
BlsI GCNGC 2 cut(s) 510, 840
Bme1390I CCNGG 1 cut(s) 800
BmiI GGNNCC 1 cut(s) 847
BmrFI CCNGG 1 cut(s) 800
BmsI GCATC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 923
BpmI CTGGAG 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 92
BsaBI GATNNNNATC 2 cut(s) 429, 810
BsaHI GRCGYC 1 cut(s) 250
BsaWI WCCGGW 3 cut(s) 89, 305, 363
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 594
Bse118I RCCGGY 1 cut(s) 363
Bse1I ACTGG 4 cut(s) 32, 426, 607, 963
Bse8I GATNNNNATC 2 cut(s) 429, 810
BseBI CCWGG 1 cut(s) 800
BseGI GGATG 1 cut(s) 121
BseJI GATNNNNATC 2 cut(s) 429, 810
BseLI CCNNNNNNNGG 1 cut(s) 594
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 4 cut(s) 32, 426, 607, 963
BseSI GKGCMC 1 cut(s) 589
BseXI GCAGC 2 cut(s) 495, 850
BseYI CCCAGC 3 cut(s) 62, 453, 841
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 2 cut(s) 23, 496
BshTI ACCGGT 1 cut(s) 363
BsiEI CGRYCG 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 655
BsiSI CCGG 3 cut(s) 90, 306, 364
BslI CCNNNNNNNGG 1 cut(s) 594
BsmAI GTCTC 4 cut(s) 33, 334, 615, 726
BsmBI CGTCTC 1 cut(s) 726
BsnI GGCC 2 cut(s) 23, 496
Bsp1286I GDGCHC 2 cut(s) 589, 655
Bsp143I GATC 3 cut(s) 424, 430, 575
BspACI CCGC 1 cut(s) 833
BspANI GGCC 2 cut(s) 23, 496
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 847
BspPI GGATC 1 cut(s) 432
BspTI CTTAAG 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 363
BsrI ACTGG 4 cut(s) 32, 426, 607, 963
BssAI RCCGGY 1 cut(s) 363
BssMI GATC 3 cut(s) 424, 430, 575
BssNI GRCGYC 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 800
Bst4CI ACNGT 1 cut(s) 87
Bst6I CTCTTC 2 cut(s) 46, 620
BstACI GRCGYC 1 cut(s) 250
BstAFI CTTAAG 1 cut(s) 677
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 3 cut(s) 427, 433, 578
BstMAI GTCTC 4 cut(s) 33, 334, 615, 726
BstMBI GATC 3 cut(s) 424, 430, 575
BstMCI CGRYCG 1 cut(s) 364
BstNI CCWGG 1 cut(s) 800
BstSCI CCNGG 1 cut(s) 798
BstSFI CTRYAG 1 cut(s) 83
BstSLI GKGCMC 1 cut(s) 589
BstV1I GCAGC 2 cut(s) 495, 850
BstV2I GAAGAC 1 cut(s) 923
BstX2I RGATCY 2 cut(s) 424, 575
BstYI RGATCY 2 cut(s) 424, 575
BsuRI GGCC 2 cut(s) 23, 496
BtsCI GGATG 1 cut(s) 121
BtsI GCAGTG 2 cut(s) 166, 437
BtsIMutI CAGTG 6 cut(s) 166, 437, 600, 882, 933, 970
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 363
Csp6I GTAC 3 cut(s) 35, 322, 419
CspAI ACCGGT 1 cut(s) 363
CspCI CAANNNNNGTGG 2 cut(s) 846, 881
CviAII CATG 2 cut(s) 522, 884
CviQI GTAC 3 cut(s) 35, 322, 419
DdeI CTNAG 1 cut(s) 174
DpnI GATC 3 cut(s) 426, 432, 577
DpnII GATC 3 cut(s) 424, 430, 575
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 2 cut(s) 46, 620
EarI CTCTTC 2 cut(s) 46, 620
EciI GGCGGA 1 cut(s) 848
Ecl136II GAGCTC 1 cut(s) 653
Eco24I GRGCYC 1 cut(s) 655
Eco32I GATATC 1 cut(s) 563
Eco53kI GAGCTC 1 cut(s) 653
Eco57I CTGAAG 2 cut(s) 666, 935
EcoICRI GAGCTC 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 798
EcoRV GATATC 1 cut(s) 563
EcoT38I GRGCYC 1 cut(s) 655
Esp3I CGTCTC 1 cut(s) 726
FaeI CATG 2 cut(s) 525, 887
FalI AAGNNNNNCTT 4 cut(s) 639, 671, 683, 715
FatI CATG 2 cut(s) 521, 883
FauNDI CATATG 2 cut(s) 465, 851
FbaI TGATCA 1 cut(s) 430
Fnu4HI GCNGC 2 cut(s) 509, 839
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 655
Fsp4HI GCNGC 2 cut(s) 509, 839
FspBI CTAG 2 cut(s) 45, 579
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 509, 839
GsaI CCCAGC 3 cut(s) 66, 457, 845
GsuI CTGGAG 1 cut(s) 15
HaeIII GGCC 2 cut(s) 23, 496
HapII CCGG 3 cut(s) 90, 306, 364
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 2 cut(s) 525, 887
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 8 cut(s) 16, 26, 101, 460, 503, 608, 684, 869
HpaII CCGG 3 cut(s) 90, 306, 364
HphI GGTGA 3 cut(s) 158, 617, 809
Hpy166II GTNNAC 2 cut(s) 37, 600
Hpy188I TCNGA 2 cut(s) 268, 619
Hpy188III TCNNGA 5 cut(s) 10, 254, 428, 668, 751
Hpy8I GTNNAC 2 cut(s) 37, 600
HpyAV CCTTC 4 cut(s) 641, 683, 748, 798
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4IV ACGT 2 cut(s) 250, 735
HpyCH4V TGCA 6 cut(s) 278, 372, 521, 659, 762, 893
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 2 cut(s) 250, 735
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 2 cut(s) 525, 887
HspAI GCGC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 3 cut(s) 424, 430, 575
LmnI GCTCC 3 cut(s) 650, 835, 845
Lsp1109I GCAGC 2 cut(s) 495, 850
LweI GCATC 1 cut(s) 281
MaeI CTAG 2 cut(s) 45, 579
MaeII ACGT 2 cut(s) 250, 735
MaeIII GTNAC 3 cut(s) 310, 877, 931
MalI GATC 3 cut(s) 426, 432, 577
MboI GATC 3 cut(s) 424, 430, 575
MflI RGATCY 2 cut(s) 424, 575
MhlI GDGCHC 2 cut(s) 589, 655
MluCI AATT 6 cut(s) 205, 445, 546, 590, 707, 783
MlyI GAGTC 4 cut(s) 25, 35, 110, 617
MnlI CCTC 4 cut(s) 214, 277, 486, 707
MseI TTAA 3 cut(s) 345, 384, 678
MslI CAYNNNNRTG 1 cut(s) 938
MspA1I CMGCKG 2 cut(s) 457, 841
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 3 cut(s) 90, 306, 364
MspR9I CCNGG 1 cut(s) 800
MvaI CCWGG 1 cut(s) 800
NdeI CATATG 2 cut(s) 465, 851
NdeII GATC 3 cut(s) 424, 430, 575
NlaIII CATG 2 cut(s) 525, 887
NlaIV GGNNCC 1 cut(s) 847
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 3 cut(s) 310, 877, 931
PfeI GAWTC 4 cut(s) 460, 503, 684, 869
PinAI ACCGGT 1 cut(s) 363
PkrI GCNGC 2 cut(s) 510, 840
PleI GAGTC 4 cut(s) 24, 34, 109, 616
PpsI GAGTC 4 cut(s) 24, 34, 109, 616
Psp124BI GAGCTC 1 cut(s) 655
Psp6I CCWGG 1 cut(s) 798
PspFI CCCAGC 3 cut(s) 62, 453, 841
PspGI CCWGG 1 cut(s) 798
PspN4I GGNNCC 1 cut(s) 847
PsuI RGATCY 2 cut(s) 424, 575
PvuII CAGCTG 2 cut(s) 457, 841
RsaI GTAC 3 cut(s) 36, 323, 420
RsaNI GTAC 3 cut(s) 35, 322, 419
RseI CAYNNNNRTG 1 cut(s) 938
SacI GAGCTC 1 cut(s) 655
SaqAI TTAA 3 cut(s) 345, 384, 678
SatI GCNGC 2 cut(s) 509, 839
Sau3AI GATC 3 cut(s) 424, 430, 575
SchI GAGTC 4 cut(s) 25, 35, 110, 617
ScrFI CCNGG 1 cut(s) 800
SduI GDGCHC 2 cut(s) 589, 655
SetI ASST 9 cut(s) 142, 253, 459, 655, 675, 738, 822, 843, 915
SfaNI GCATC 1 cut(s) 281
SfcI CTRYAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 938
SmlI CTYRAG 2 cut(s) 71, 677
SmoI CTYRAG 2 cut(s) 71, 677
Sse9I AATT 6 cut(s) 205, 445, 546, 590, 707, 783
SsiI CCGC 1 cut(s) 833
SspI AATATT 1 cut(s) 485
SspMI CTAG 2 cut(s) 45, 579
SstI GAGCTC 1 cut(s) 655
StyD4I CCNGG 1 cut(s) 798
TaaI ACNGT 1 cut(s) 87
TaiI ACGT 2 cut(s) 253, 738
TaqI TCGA 3 cut(s) 236, 360, 947
TasI AATT 6 cut(s) 205, 445, 546, 590, 707, 783
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 4 cut(s) 460, 503, 684, 869
Tru1I TTAA 3 cut(s) 345, 384, 678
Tru9I TTAA 3 cut(s) 345, 384, 678
TscAI CASTG 6 cut(s) 166, 444, 607, 882, 940, 970
TseFI GTSAC 3 cut(s) 310, 877, 931
TseI GCWGC 2 cut(s) 508, 838
Tsp45I GTSAC 3 cut(s) 310, 877, 931
TspDTI ATGAA 6 cut(s) 132, 138, 369, 720, 861, 956
TspGWI ACGGA 2 cut(s) 296, 569
TspRI CASTG 6 cut(s) 166, 444, 607, 882, 940, 970
Vha464I CTTAAG 1 cut(s) 677
XapI RAATTY 1 cut(s) 445
XcmI CCANNNNNNNNNTGG 1 cut(s) 519
XspI CTAG 2 cut(s) 45, 579
ZraI GACGTC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.