Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

59141664 .. 59142799

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21016

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAAAGATATCATTTCTTTAGATTTAATTGTTCCCAATTTGGGTTCACTTGTGAGTCTCTTTTAGAGTTGAAGAGTGATGAGAGTGAGCCTGAAGGAGCTCTTGCAAATGTTCTTGACCTTCTTAAGCGAATCCACAAGATTTTCTTCTACGAATTGGGAGGCAATCTTATAGATAGAGATGTAAGGCAGGTTCTGAAAACTGTTAGGAAGGAAGTCTTGAAGGGGTGCAAAGTTGTGTTCAGCCGTTTAATTCCTTCAAAAGTCCTGGCTGATAATCATCACCTGTGGAAGATGGCGGAGCAGCTGGGAGCCATATGTTCAACCGAAGTGGATTCATCAGTGACCCATGTTGTTGCATTAGATGCAGGAACAGAAAAGTCTCACTGGGCATTAAATCAGAAAAAGTTTTTGGTCCATCCTCTGTTGCTTGAAGCAGCAAATTATATGTGGCGAAAGCAACCTGAAGACAAGTTTCCTGTCACTGAACGAAATCGAAAACCTAAACCCAGTGATTTGCTATTTTTTGGATATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

179

Amino Acids

20.74

Weight (kDa)

8.31

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	181
AciI	CCGC	1 cut(s)	299
AcuI	CTGAAG	2 cut(s)	114, 486
AfiI	CCNNNNNNNGG	1 cut(s)	42
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	5 cut(s)	73, 223, 261, 324, 434
AjnI	CCWGG	1 cut(s)	267
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	2 cut(s)	101, 307
AluI	AGCT	2 cut(s)	101, 307
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	2 cut(s)	63, 387
AlwNI	CAGNNNCTG	1 cut(s)	196
ApeKI	GCWGC	2 cut(s)	304, 437
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	316, 449
BccI	CCATC	2 cut(s)	289, 426
BceAI	ACGGC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	63, 387
BfrI	CTTAAG	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	181
BisI	GCNGC	2 cut(s)	305, 438
BlsI	GCNGC	2 cut(s)	306, 439
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	269
BmrI	ACTGGG	2 cut(s)	397, 504
BmsI	GCATC	1 cut(s)	355
BmuI	ACTGGG	2 cut(s)	397, 504
BpiI	GAAGAC	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse1I	ACTGG	2 cut(s)	392, 510
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseNI	ACTGG	2 cut(s)	392, 510
BseXI	GCAGC	2 cut(s)	316, 449
BseYI	CCCAGC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	2 cut(s)	63, 387
Bsp1286I	GDGCHC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	299
BspLI	GGNNCC	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	181
BspTI	CTTAAG	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	392, 510
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	418
BstMAI	GTCTC	2 cut(s)	63, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	316, 449
BstV2I	GAAGAC	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	4 cut(s)	348, 385, 483, 517
BveI	ACCTGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	415
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	6 cut(s)	91, 101, 246, 272, 307, 314
CviKI_1	RGCY	6 cut(s)	91, 101, 246, 272, 307, 314
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	101
Eco57I	CTGAAG	2 cut(s)	114, 486
EcoICRI	GAGCTC	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	267
EcoRV	GATATC	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	1 cut(s)	353
FaiI	YATR	7 cut(s)	173, 317, 319, 351, 447, 449, 534
FalI	AAGNNNNNCTT	6 cut(s)	87, 119, 131, 163, 203, 235
FatI	CATG	1 cut(s)	349
FauNDI	CATATG	1 cut(s)	317
Fnu4HI	GCNGC	2 cut(s)	305, 438
FokI	GGATG	1 cut(s)	405
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	305, 438
GluI	GCNGC	2 cut(s)	305, 438
GsaI	CCCAGC	1 cut(s)	311
Hin1II	CATG	1 cut(s)	353
HinfI	GANTC	3 cut(s)	56, 132, 335
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	198, 402
Hpy188III	TCNNGA	2 cut(s)	116, 220
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	5 cut(s)	89, 131, 205, 217, 267
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	4 cut(s)	107, 231, 359, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
Hsp92II	CATG	1 cut(s)	353
LmnI	GCTCC	3 cut(s)	98, 301, 311
Lsp1109I	GCAGC	2 cut(s)	316, 449
LweI	GCATC	1 cut(s)	355
MaeIII	GTNAC	2 cut(s)	343, 481
MboII	GAAGA	4 cut(s)	85, 139, 304, 479
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	5 cut(s)	28, 38, 155, 252, 442
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	155, 432
MseI	TTAA	4 cut(s)	27, 126, 251, 395
MspA1I	CMGCKG	1 cut(s)	307
MspCI	CTTAAG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeI	CATATG	1 cut(s)	317
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	2 cut(s)	343, 481
PfeI	GAWTC	2 cut(s)	132, 335
PkrI	GCNGC	2 cut(s)	306, 439
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	415
PsrI	GAACNNNNNNTAC	2 cut(s)	177, 209
PstNI	CAGNNNCTG	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	103
SaqAI	TTAA	4 cut(s)	27, 126, 251, 395
SatI	GCNGC	2 cut(s)	305, 438
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	7 cut(s)	103, 123, 195, 288, 309, 466, 505
SfaNI	GCATC	1 cut(s)	355
SinI	GGWCC	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	5 cut(s)	28, 38, 155, 252, 442
SsiI	CCGC	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	496
TasI	AATT	5 cut(s)	28, 38, 155, 252, 442
TfiI	GAWTC	2 cut(s)	132, 335
Tru1I	TTAA	4 cut(s)	27, 126, 251, 395
Tru9I	TTAA	4 cut(s)	27, 126, 251, 395
TscAI	CASTG	4 cut(s)	348, 392, 490, 517
TseFI	GTSAC	2 cut(s)	343, 481
TseI	GCWGC	2 cut(s)	304, 437
Tsp45I	GTSAC	2 cut(s)	343, 481
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	4 cut(s)	348, 392, 490, 517
Vha464I	CTTAAG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.