RNA polymerase II C-terminal domain phosphatase-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 1043 |
| AclWI | GGATC | 4 cut(s) | 557, 664, 918, 1073 |
| AcoI | YGGCCR | 1 cut(s) | 549 |
| AcsI | RAATTY | 4 cut(s) | 141, 271, 944, 1186 |
| AcuI | CTGAAG | 3 cut(s) | 210, 971, 1230 |
| AdeI | CACNNNGTG | 1 cut(s) | 421 |
| AfaI | GTAC | 1 cut(s) | 849 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 55, 435, 456, 778, 955 |
| AflII | CTTAAG | 2 cut(s) | 119, 374 |
| AflIII | ACRYGT | 1 cut(s) | 1093 |
| AgsI | TTSAA | 5 cut(s) | 283, 802, 854, 967, 1068 |
| AjiI | CACGTC | 1 cut(s) | 937 |
| AjnI | CCWGG | 1 cut(s) | 565 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 183, 215 |
| AleI | CACNNNNGTG | 1 cut(s) | 1094 |
| AluBI | AGCT | 3 cut(s) | 505, 833, 1051 |
| AluI | AGCT | 3 cut(s) | 505, 833, 1051 |
| Alw26I | GTCTC | 2 cut(s) | 25, 122 |
| AlwI | GGATC | 4 cut(s) | 557, 664, 918, 1073 |
| Ama87I | CYCGRG | 1 cut(s) | 651 |
| AoxI | GGCC | 4 cut(s) | 108, 458, 549, 769 |
| ApeKI | GCWGC | 2 cut(s) | 1048, 1103 |
| ApoI | RAATTY | 4 cut(s) | 141, 271, 944, 1186 |
| AspA2I | CCTAGG | 2 cut(s) | 88, 731 |
| AspLEI | GCGC | 2 cut(s) | 541, 1058 |
| AspS9I | GGNCC | 1 cut(s) | 108 |
| AsuHPI | GGTGA | 2 cut(s) | 348, 1171 |
| AvaI | CYCGRG | 1 cut(s) | 651 |
| AvrII | CCTAGG | 2 cut(s) | 88, 731 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 890, 923 |
| BalI | TGGCCA | 1 cut(s) | 551 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 840, 872, 882, 914 |
| BbsI | GAAGAC | 2 cut(s) | 177, 809 |
| BbvI | GCAGC | 2 cut(s) | 1060, 1115 |
| BccI | CCATC | 3 cut(s) | 514, 1033, 1090 |
| BciT130I | CCWGG | 1 cut(s) | 567 |
| BclI | TGATCA | 2 cut(s) | 346, 394 |
| BcoDI | GTCTC | 2 cut(s) | 25, 122 |
| BfaI | CTAG | 8 cut(s) | 89, 98, 267, 314, 542, 635, 732, 753 |
| BfoI | RGCGCY | 1 cut(s) | 1059 |
| BfrI | CTTAAG | 2 cut(s) | 119, 374 |
| BglII | AGATCT | 1 cut(s) | 749 |
| BisI | GCNGC | 2 cut(s) | 1049, 1104 |
| BlnI | CCTAGG | 2 cut(s) | 88, 731 |
| BlsI | GCNGC | 2 cut(s) | 1050, 1105 |
| Bme1390I | CCNGG | 1 cut(s) | 567 |
| BmeT110I | CYCGRG | 1 cut(s) | 651 |
| BmgBI | CACGTC | 1 cut(s) | 937 |
| BmgT120I | GGNCC | 1 cut(s) | 108 |
| BmrFI | CCNGG | 1 cut(s) | 567 |
| BmrI | ACTGGG | 2 cut(s) | 382, 426 |
| BmsI | GCATC | 1 cut(s) | 717 |
| BmuI | ACTGGG | 2 cut(s) | 382, 426 |
| BpiI | GAAGAC | 2 cut(s) | 177, 809 |
| Bpu10I | CCTNAGC | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 35 |
| Bsa29I | ATCGAT | 1 cut(s) | 247 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1023 |
| BsaJI | CCNNGG | 3 cut(s) | 88, 213, 731 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 7, 37 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 55, 435, 456, 778, 955 |
| Bse1I | ACTGG | 3 cut(s) | 388, 432, 489 |
| Bse3DI | GCAATG | 1 cut(s) | 262 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1023 |
| BseBI | CCWGG | 1 cut(s) | 567 |
| BseCI | ATCGAT | 1 cut(s) | 247 |
| BseDI | CCNNGG | 3 cut(s) | 88, 213, 731 |
| BseGI | GGATG | 2 cut(s) | 238, 1024 |
| BseJI | GATNNNNATC | 1 cut(s) | 1023 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 55, 435, 456, 778, 955 |
| BseMI | GCAATG | 1 cut(s) | 262 |
| BseMII | CTCAG | 2 cut(s) | 786, 787 |
| BseNI | ACTGG | 3 cut(s) | 388, 432, 489 |
| BseRI | GAGGAG | 1 cut(s) | 843 |
| BseXI | GCAGC | 2 cut(s) | 1060, 1115 |
| BseYI | CCCAGC | 1 cut(s) | 1051 |
| BshFI | GGCC | 4 cut(s) | 110, 460, 551, 771 |
| BshVI | ATCGAT | 1 cut(s) | 247 |
| BsiHKCI | CYCGRG | 1 cut(s) | 651 |
| BslFI | GGGAC | 3 cut(s) | 72, 583, 725 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 55, 435, 456, 778, 955 |
| BsmAI | GTCTC | 2 cut(s) | 25, 122 |
| BsmFI | GGGAC | 3 cut(s) | 72, 583, 725 |
| BsnI | GGCC | 4 cut(s) | 110, 460, 551, 771 |
| BsoBI | CYCGRG | 1 cut(s) | 651 |
| BspACI | CCGC | 1 cut(s) | 1043 |
| BspANI | GGCC | 4 cut(s) | 110, 460, 551, 771 |
| BspCNI | CTCAG | 2 cut(s) | 786, 787 |
| BspDI | ATCGAT | 1 cut(s) | 247 |
| BspHI | TCATGA | 1 cut(s) | 886 |
| BspPI | GGATC | 4 cut(s) | 557, 664, 918, 1073 |
| BspTI | CTTAAG | 2 cut(s) | 119, 374 |
| BsrDI | GCAATG | 1 cut(s) | 262 |
| BsrI | ACTGG | 3 cut(s) | 388, 432, 489 |
| BssECI | CCNNGG | 3 cut(s) | 88, 213, 731 |
| BssT1I | CCWWGG | 3 cut(s) | 88, 213, 731 |
| Bst2UI | CCWGG | 1 cut(s) | 567 |
| Bst4CI | ACNGT | 3 cut(s) | 19, 83, 974 |
| BstAFI | CTTAAG | 2 cut(s) | 119, 374 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 161, 1109 |
| BstC8I | GCNNGC | 2 cut(s) | 486, 648 |
| BstDEI | CTNAG | 3 cut(s) | 227, 773, 795 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 776, 953 |
| BstF5I | GGATG | 2 cut(s) | 238, 1024 |
| BstH2I | RGCGCY | 1 cut(s) | 1059 |
| BstHHI | GCGC | 2 cut(s) | 541, 1058 |
| BstMAI | GTCTC | 2 cut(s) | 25, 122 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 161, 839, 1109 |
| BstNI | CCWGG | 1 cut(s) | 567 |
| BstNSI | RCATGY | 1 cut(s) | 1097 |
| BstSCI | CCNGG | 1 cut(s) | 565 |
| BstV1I | GCAGC | 2 cut(s) | 1060, 1115 |
| BstV2I | GAAGAC | 2 cut(s) | 177, 809 |
| BstX2I | RGATCY | 2 cut(s) | 749, 910 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 220 |
| BstYI | RGATCY | 2 cut(s) | 749, 910 |
| Bsu15I | ATCGAT | 1 cut(s) | 247 |
| BsuRI | GGCC | 4 cut(s) | 110, 460, 551, 771 |
| BsuTUI | ATCGAT | 1 cut(s) | 247 |
| BtrI | CACGTC | 1 cut(s) | 937 |
| BtsCI | GGATG | 2 cut(s) | 238, 1024 |
| BtsIMutI | CAGTG | 1 cut(s) | 88 |
| Cac8I | GCNNGC | 2 cut(s) | 486, 648 |
| CciI | TCATGA | 1 cut(s) | 886 |
| CfoI | GCGC | 2 cut(s) | 541, 1058 |
| Cfr13I | GGNCC | 1 cut(s) | 108 |
| ClaI | ATCGAT | 1 cut(s) | 247 |
| Csp6I | GTAC | 1 cut(s) | 848 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 325, 360 |
| CviAII | CATG | 5 cut(s) | 181, 595, 887, 992, 1094 |
| CviQI | GTAC | 1 cut(s) | 848 |
| DdeI | CTNAG | 3 cut(s) | 227, 773, 795 |
| DraIII | CACNNNGTG | 1 cut(s) | 421 |
| EaeI | YGGCCR | 1 cut(s) | 549 |
| EciI | GGCGGA | 1 cut(s) | 1058 |
| Eco130I | CCWWGG | 3 cut(s) | 88, 213, 731 |
| Eco147I | AGGCCT | 1 cut(s) | 460 |
| Eco57I | CTGAAG | 3 cut(s) | 210, 971, 1230 |
| Eco88I | CYCGRG | 1 cut(s) | 651 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 776, 953 |
| EcoRII | CCWGG | 1 cut(s) | 565 |
| EcoT14I | CCWWGG | 3 cut(s) | 88, 213, 731 |
| ErhI | CCWWGG | 3 cut(s) | 88, 213, 731 |
| FaeI | CATG | 5 cut(s) | 184, 598, 890, 995, 1097 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 148, 180, 357, 389, 947, 979 |
| FaqI | GGGAC | 3 cut(s) | 72, 583, 725 |
| FatI | CATG | 5 cut(s) | 180, 594, 886, 991, 1093 |
| FbaI | TGATCA | 2 cut(s) | 346, 394 |
| Fnu4HI | GCNGC | 2 cut(s) | 1049, 1104 |
| FokI | GGATG | 2 cut(s) | 245, 1011 |
| Fsp4HI | GCNGC | 2 cut(s) | 1049, 1104 |
| FspBI | CTAG | 8 cut(s) | 89, 98, 267, 314, 542, 635, 732, 753 |
| GlaI | GCGC | 2 cut(s) | 540, 1057 |
| GluI | GCNGC | 2 cut(s) | 1049, 1104 |
| GsaI | CCCAGC | 1 cut(s) | 1055 |
| HaeII | RGCGCY | 1 cut(s) | 1059 |
| HaeIII | GGCC | 4 cut(s) | 110, 460, 551, 771 |
| HhaI | GCGC | 2 cut(s) | 541, 1058 |
| Hin1II | CATG | 5 cut(s) | 184, 598, 890, 995, 1097 |
| Hin6I | GCGC | 2 cut(s) | 539, 1056 |
| HinP1I | GCGC | 2 cut(s) | 539, 1056 |
| HinfI | GANTC | 6 cut(s) | 71, 591, 631, 656, 1162, 1174 |
| HphI | GGTGA | 2 cut(s) | 348, 1171 |
| Hpy166II | GTNNAC | 3 cut(s) | 415, 424, 527 |
| Hpy188I | TCNGA | 6 cut(s) | 27, 76, 190, 351, 394, 796 |
| Hpy188III | TCNNGA | 8 cut(s) | 52, 308, 314, 635, 887, 940, 949, 964 |
| Hpy8I | GTNNAC | 3 cut(s) | 415, 424, 527 |
| Hpy99I | CGWCG | 1 cut(s) | 365 |
| HpyAV | CCTTC | 3 cut(s) | 949, 961, 1139 |
| HpyCH4III | ACNGT | 3 cut(s) | 19, 83, 974 |
| HpyCH4IV | ACGT | 2 cut(s) | 473, 936 |
| HpyCH4V | TGCA | 6 cut(s) | 406, 484, 842, 863, 1103, 1184 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 161, 839, 1109 |
| HpyF3I | CTNAG | 3 cut(s) | 227, 773, 795 |
| HpySE526I | ACGT | 2 cut(s) | 473, 936 |
| Hsp92II | CATG | 5 cut(s) | 184, 598, 890, 995, 1097 |
| HspAI | GCGC | 2 cut(s) | 539, 1056 |
| Ksp22I | TGATCA | 2 cut(s) | 346, 394 |
| LmnI | GCTCC | 2 cut(s) | 830, 1045 |
| Lsp1109I | GCAGC | 2 cut(s) | 1060, 1115 |
| LweI | GCATC | 1 cut(s) | 717 |
| MaeI | CTAG | 8 cut(s) | 89, 98, 267, 314, 542, 635, 732, 753 |
| MaeII | ACGT | 2 cut(s) | 473, 936 |
| MaeIII | GTNAC | 3 cut(s) | 83, 354, 1087 |
| MboII | GAAGA | 6 cut(s) | 177, 377, 814, 964, 1048, 1223 |
| MflI | RGATCY | 2 cut(s) | 749, 910 |
| MlsI | TGGCCA | 1 cut(s) | 551 |
| MluCI | AATT | 7 cut(s) | 141, 240, 271, 944, 978, 1186, 1216 |
| MluNI | TGGCCA | 1 cut(s) | 551 |
| MlyI | GAGTC | 2 cut(s) | 600, 640 |
| MmeI | TCCRAC | 1 cut(s) | 48 |
| Mox20I | TGGCCA | 1 cut(s) | 551 |
| MscI | TGGCCA | 1 cut(s) | 551 |
| MseI | TTAA | 3 cut(s) | 120, 375, 1140 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1094 |
| Msp20I | TGGCCA | 1 cut(s) | 551 |
| MspA1I | CMGCKG | 1 cut(s) | 1051 |
| MspCI | CTTAAG | 2 cut(s) | 119, 374 |
| MspR9I | CCNGG | 1 cut(s) | 567 |
| MvaI | CCWGG | 1 cut(s) | 567 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 161, 839, 1109 |
| NlaIII | CATG | 5 cut(s) | 184, 598, 890, 995, 1097 |
| NmuCI | GTSAC | 3 cut(s) | 83, 354, 1087 |
| NspI | RCATGY | 1 cut(s) | 1097 |
| OliI | CACNNNNGTG | 1 cut(s) | 1094 |
| PagI | TCATGA | 1 cut(s) | 886 |
| PceI | AGGCCT | 1 cut(s) | 460 |
| PciI | ACATGT | 1 cut(s) | 1093 |
| PfeI | GAWTC | 4 cut(s) | 71, 656, 1162, 1174 |
| PfoI | TCCNGGA | 1 cut(s) | 565 |
| PkrI | GCNGC | 2 cut(s) | 1050, 1105 |
| PleI | GAGTC | 2 cut(s) | 599, 639 |
| PpsI | GAGTC | 2 cut(s) | 599, 639 |
| PscI | ACATGT | 1 cut(s) | 1093 |
| Psp6I | CCWGG | 1 cut(s) | 565 |
| PspFI | CCCAGC | 1 cut(s) | 1051 |
| PspGI | CCWGG | 1 cut(s) | 565 |
| PspPI | GGNCC | 1 cut(s) | 108 |
| PsuI | RGATCY | 2 cut(s) | 749, 910 |
| PvuII | CAGCTG | 1 cut(s) | 1051 |
| RsaI | GTAC | 1 cut(s) | 849 |
| RsaNI | GTAC | 1 cut(s) | 848 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1094 |
| SaqAI | TTAA | 3 cut(s) | 120, 375, 1140 |
| SatI | GCNGC | 2 cut(s) | 1049, 1104 |
| Sau96I | GGNCC | 1 cut(s) | 108 |
| SchI | GAGTC | 2 cut(s) | 600, 640 |
| ScrFI | CCNGG | 1 cut(s) | 567 |
| SfaNI | GCATC | 1 cut(s) | 717 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1094 |
| SmlI | CTYRAG | 3 cut(s) | 50, 119, 374 |
| SmoI | CTYRAG | 3 cut(s) | 50, 119, 374 |
| Sse9I | AATT | 7 cut(s) | 141, 240, 271, 944, 978, 1186, 1216 |
| SseBI | AGGCCT | 1 cut(s) | 460 |
| SsiI | CCGC | 1 cut(s) | 1043 |
| SspI | AATATT | 1 cut(s) | 40 |
| SspMI | CTAG | 8 cut(s) | 89, 98, 267, 314, 542, 635, 732, 753 |
| StuI | AGGCCT | 1 cut(s) | 460 |
| StyD4I | CCNGG | 1 cut(s) | 565 |
| StyI | CCWWGG | 3 cut(s) | 88, 213, 731 |
| TaaI | ACNGT | 3 cut(s) | 19, 83, 974 |
| TaiI | ACGT | 2 cut(s) | 476, 939 |
| TaqI | TCGA | 4 cut(s) | 247, 1011, 1077, 1114 |
| TasI | AATT | 7 cut(s) | 141, 240, 271, 944, 978, 1186, 1216 |
| TatI | WGTACW | 1 cut(s) | 847 |
| TfiI | GAWTC | 4 cut(s) | 71, 656, 1162, 1174 |
| Tru1I | TTAA | 3 cut(s) | 120, 375, 1140 |
| Tru9I | TTAA | 3 cut(s) | 120, 375, 1140 |
| TscAI | CASTG | 1 cut(s) | 88 |
| TseFI | GTSAC | 3 cut(s) | 83, 354, 1087 |
| TseI | GCWGC | 2 cut(s) | 1048, 1103 |
| Tsp45I | GTSAC | 3 cut(s) | 83, 354, 1087 |
| TspDTI | ATGAA | 7 cut(s) | 186, 273, 287, 825, 875, 903, 1166 |
| TspRI | CASTG | 1 cut(s) | 88 |
| Vha464I | CTTAAG | 2 cut(s) | 119, 374 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 776, 953 |
| XapI | RAATTY | 4 cut(s) | 141, 271, 944, 1186 |
| XbaI | TCTAGA | 2 cut(s) | 313, 634 |
| XceI | RCATGY | 1 cut(s) | 1097 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 517 |
| XmaJI | CCTAGG | 2 cut(s) | 88, 731 |
| XspI | CTAG | 8 cut(s) | 89, 98, 267, 314, 542, 635, 732, 753 |