FvH4_7g07841

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
7745145 .. 7747234
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07841.t1

Sequence Viewer

Length: 1296 bp
ATGGATGCTCGGATTTCACAGGCGGAGTTTGCACATCCGGATGAATTGGATGAGGAATTCGACAGCTTCCCTACAAGCCGACCCTCTGACATTGGGAGAATGAGTGTGGCTACTGTGTCTCCGATTTTGAATAATATTGATAATCTTGTTGGGTATCTTAAGAGGGCAAGAGGGTTAGATTATTCTGATTACAGTGATCTAGAGTTGATAGATCATAGAGCCAAAAGGCTTAAGGCAGAGACTGATGTTGATGAAACCCCTCTGAGATTTGGGTATATACCCAAGGGTTTAGTTGTTAGCAGTGATGAGATTGATCGAATACGCAATCAAAACACCAAAAACTTACTCTTGAACCATAAAAAACTTCACCTGGTGCTTGATTTAGACCACACCCTGCTTAATAGTACCTGTCTTGATGATTTGTCACCCGATGAAGAGTATTTGAAGACCCAAACCCAGGCTGATCATTCTCTGCAGTATGTTAGCATTGTCGAGACTCCTAGTATGAGGTTGATGACCAAGTTGAGGCCGTACATTAGGACATTCCTACACCAAGCCAGTCAAATGTTTGAGTTGTCTGTTTACACGATGGGTAGTCGGGATTATGCTTTGGAAATGGTGAAGCTACTTGATCCTGCAAACCTGATCTTTGGTGGTAGGATCATATCACGTAGCGATAGCACAGTAAGAGATAGGAAAAGTTTAGATGTCTTGCTTGCGCGAGAATCTAATGTTGTGATCATTGATGATAAGAAAGATGTATGGGCAACTGACAATCAGGAGAATGTTATTGTAATGCCTAGGTACCATTTTTTTAGGTCTAGTTGTCAAGAGTTTGGCCTAAGGAATGTTAAGCCTTATTCTGAGTTGAAGAGTGACGAATGCGATCGGTATGGAGGAGCTTATCTTGCAAGTGTGCTTCAGCTTCTTAGGCATATCCACATTTTATTCTTTAACGAAGTTGAGTCTCAAGATCTTGTTGATAGAGATGTCAGACCAGTGTTACAAATTCTGAAGAAGCAAGTTTTGAATGGGTGTAAGATCGTTTTCAGCCATGTTTTCCCCTTGAGTGTCGAGGCATCAACTCATCCTTTGTGGAAGATGGCTGGGCAATTGGGTGCTACTTGTTCAACAGAGTTTGATGCAGATGTCACGCATGTGGTTGCAGTAGACGCTCGAACCCAGAAGTCAATTCGTGCAGTTAGAGAAGGAAAGTTTTTAGTAAATCCGCAATGGATTCATATCACGAATATTATGTGGCAAAGGCAACCTGAGGATGATTTCCCATGTCATTAG

Protein Analysis

432

Amino Acids

49.47

Weight (kDa)

5.69

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRT_C PF08372 1 - 52 8.1e-11 Plant phosphoribosyltransferase C-terminal
NIF PF03031 123 - 291 3.5e-26 NLI interacting factor-like phosphatase
BRCT PF00533 342 - 413 2.6e-07 BRCA1 C Terminus (BRCT) domain
PTCB-BRCT PF12738 362 - 412 1e-05 twin BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000221)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58003 AT5G58003 AT5G58003
fragaria_vesca FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica MD09G1131300.v1.1
prunus_persica Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis pycom09g05350
rosa_chinensis RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 804
AccB1I GGYRCC 1 cut(s) 804
AccI GTMKAC 1 cut(s) 1170
AccII CGCG 1 cut(s) 721
AccIII TCCGGA 1 cut(s) 37
AciI CCGC 2 cut(s) 23, 1229
AclWI GGATC 2 cut(s) 626, 668
AcsI RAATTY 2 cut(s) 56, 1008
AcuI CTGAAG 2 cut(s) 905, 1034
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 3 cut(s) 406, 533, 806
AfiI CCNNNNNNNGG 2 cut(s) 457, 525
AflII CTTAAG 2 cut(s) 158, 230
AgsI TTSAA 6 cut(s) 130, 352, 445, 871, 1030, 1131
AjnI CCWGG 2 cut(s) 369, 456
AleI CACNNNNGTG 1 cut(s) 1157
AluBI AGCT 4 cut(s) 66, 625, 902, 925
AluI AGCT 4 cut(s) 66, 625, 902, 925
Alw26I GTCTC 4 cut(s) 123, 233, 488, 972
AlwI GGATC 2 cut(s) 626, 668
AlwNI CAGNNNCTG 1 cut(s) 242
Aor13HI TCCGGA 1 cut(s) 37
AoxI GGCC 2 cut(s) 527, 838
ApoI RAATTY 2 cut(s) 56, 1008
Asp718I GGTACC 1 cut(s) 804
AspA2I CCTAGG 1 cut(s) 800
AspLEI GCGC 1 cut(s) 721
AsuHPI GGTGA 3 cut(s) 359, 417, 631
AvrII CCTAGG 1 cut(s) 800
AxyI CCTNAGG 2 cut(s) 842, 1272
BanI GGYRCC 1 cut(s) 804
BbsI GAAGAC 1 cut(s) 452
BccI CCATC 2 cut(s) 583, 1096
BceAI ACGGC 1 cut(s) 514
BciT130I CCWGG 2 cut(s) 371, 458
BclI TGATCA 2 cut(s) 463, 738
BcoDI GTCTC 4 cut(s) 123, 233, 488, 972
BfaI CTAG 4 cut(s) 200, 501, 801, 822
BfmI CTRYAG 1 cut(s) 473
BfrI CTTAAG 2 cut(s) 158, 230
BglII AGATCT 1 cut(s) 973
BlnI CCTAGG 1 cut(s) 800
Bme1390I CCNGG 2 cut(s) 371, 458
BmiI GGNNCC 1 cut(s) 806
BmrFI CCNGG 2 cut(s) 371, 458
BmsI GCATC 2 cut(s) 1088, 1132
BpiI GAAGAC 1 cut(s) 452
BpuEI CTTGAG 2 cut(s) 954, 1087
BsaAI YACGTR 1 cut(s) 671
BsaBI GATNNNNATC 1 cut(s) 1241
BsaJI CCNNGG 3 cut(s) 282, 456, 800
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 4 cut(s) 88, 103, 118, 133
Bsc4I CCNNNNNNNGG 2 cut(s) 457, 525
Bse1I ACTGG 2 cut(s) 558, 998
Bse21I CCTNAGG 2 cut(s) 842, 1272
Bse3DI GCAATG 1 cut(s) 1238
Bse8I GATNNNNATC 1 cut(s) 1241
BseAI TCCGGA 1 cut(s) 37
BseBI CCWGG 2 cut(s) 371, 458
BseDI CCNNGG 3 cut(s) 282, 456, 800
BseGI GGATG 6 cut(s) 10, 34, 46, 55, 1087, 1282
BseJI GATNNNNATC 1 cut(s) 1241
BseLI CCNNNNNNNGG 2 cut(s) 457, 525
BseMI GCAATG 1 cut(s) 1238
BseMII CTCAG 3 cut(s) 254, 855, 1263
BseNI ACTGG 2 cut(s) 558, 998
BseRI GAGGAG 1 cut(s) 912
BseYI CCCAGC 1 cut(s) 1106
BsgI GTGCAG 1 cut(s) 1218
Bsh1236I CGCG 1 cut(s) 721
Bsh1285I CGRYCG 1 cut(s) 889
BshFI GGCC 2 cut(s) 529, 840
BshNI GGYRCC 1 cut(s) 804
BsiEI CGRYCG 1 cut(s) 889
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 457, 525
BsmAI GTCTC 4 cut(s) 123, 233, 488, 972
BsmI GAATGC 1 cut(s) 887
BsnI GGCC 2 cut(s) 529, 840
Bsp13I TCCGGA 1 cut(s) 37
BspACI CCGC 2 cut(s) 23, 1229
BspANI GGCC 2 cut(s) 529, 840
BspCNI CTCAG 3 cut(s) 255, 856, 1264
BspEI TCCGGA 1 cut(s) 37
BspFNI CGCG 1 cut(s) 721
BspLI GGNNCC 1 cut(s) 806
BspMAI CTGCAG 1 cut(s) 477
BspPI GGATC 2 cut(s) 626, 668
BspT107I GGYRCC 1 cut(s) 804
BspTI CTTAAG 2 cut(s) 158, 230
BsrDI GCAATG 1 cut(s) 1238
BsrI ACTGG 2 cut(s) 558, 998
BssECI CCNNGG 3 cut(s) 282, 456, 800
BssT1I CCWWGG 2 cut(s) 282, 800
Bst2UI CCWGG 2 cut(s) 371, 458
Bst4CI ACNGT 3 cut(s) 115, 194, 685
Bst6I CTCTTC 2 cut(s) 429, 866
BstAFI CTTAAG 2 cut(s) 158, 230
BstBAI YACGTR 1 cut(s) 671
BstC8I GCNNGC 1 cut(s) 717
BstDEI CTNAG 5 cut(s) 263, 842, 864, 929, 1272
BstF5I GGATG 6 cut(s) 10, 34, 46, 55, 1087, 1282
BstFNI CGCG 1 cut(s) 721
BstHHI GCGC 1 cut(s) 721
BstMAI GTCTC 4 cut(s) 123, 233, 488, 972
BstMCI CGRYCG 1 cut(s) 889
BstMWI GCNNNNNNNGC 4 cut(s) 29, 908, 931, 1172
BstNI CCWGG 2 cut(s) 371, 458
BstNSI RCATGY 1 cut(s) 1160
BstSCI CCNGG 2 cut(s) 369, 456
BstSFI CTRYAG 1 cut(s) 473
BstUI CGCG 1 cut(s) 721
BstV2I GAAGAC 1 cut(s) 452
BstX2I RGATCY 1 cut(s) 973
BstYI RGATCY 1 cut(s) 973
Bsu36I CCTNAGG 2 cut(s) 842, 1272
BsuRI GGCC 2 cut(s) 529, 840
BtsCI GGATG 6 cut(s) 10, 34, 46, 55, 1087, 1282
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 3 cut(s) 199, 307, 1005
Cac8I GCNNGC 1 cut(s) 717
CaiI CAGNNNCTG 1 cut(s) 242
CfoI GCGC 1 cut(s) 721
CseI GACGC 1 cut(s) 1181
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 3 cut(s) 405, 532, 805
CviAII CATG 3 cut(s) 1055, 1157, 1287
CviQI GTAC 3 cut(s) 405, 532, 805
DdeI CTNAG 5 cut(s) 263, 842, 864, 929, 1272
DraIII CACNNNGTG 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 429, 866
EarI CTCTTC 2 cut(s) 429, 866
EciI GGCGGA 1 cut(s) 38
Eco130I CCWWGG 2 cut(s) 282, 800
Eco57I CTGAAG 2 cut(s) 905, 1034
Eco81I CCTNAGG 2 cut(s) 842, 1272
EcoRI GAATTC 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 369, 456
EcoT14I CCWWGG 2 cut(s) 282, 800
ErhI CCWWGG 2 cut(s) 282, 800
FaeI CATG 3 cut(s) 1058, 1160, 1290
FatI CATG 3 cut(s) 1054, 1156, 1286
FbaI TGATCA 2 cut(s) 463, 738
FblI GTMKAC 1 cut(s) 1170
FokI GGATG 6 cut(s) 17, 21, 53, 62, 1074, 1289
FspBI CTAG 4 cut(s) 200, 501, 801, 822
GlaI GCGC 1 cut(s) 720
GsaI CCCAGC 1 cut(s) 1110
HaeIII GGCC 2 cut(s) 529, 840
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 1181
HhaI GCGC 1 cut(s) 721
Hin1II CATG 3 cut(s) 1058, 1160, 1290
Hin6I GCGC 1 cut(s) 719
HinP1I GCGC 1 cut(s) 719
HinfI GANTC 4 cut(s) 496, 725, 965, 1237
HpaII CCGG 1 cut(s) 38
HphI GGTGA 3 cut(s) 359, 417, 631
Hpy166II GTNNAC 2 cut(s) 583, 1171
Hpy188I TCNGA 8 cut(s) 12, 88, 123, 187, 264, 865, 995, 1014
Hpy8I GTNNAC 2 cut(s) 583, 1171
HpyAV CCTTC 1 cut(s) 1202
HpyCH4III ACNGT 3 cut(s) 115, 194, 685
HpyCH4IV ACGT 1 cut(s) 670
HpyCH4V TGCA 7 cut(s) 32, 475, 638, 911, 1145, 1166, 1199
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 908, 931, 1172
HpyF3I CTNAG 5 cut(s) 263, 842, 864, 929, 1272
HpySE526I ACGT 1 cut(s) 670
Hsp92II CATG 3 cut(s) 1058, 1160, 1290
HspAI GCGC 1 cut(s) 719
Kpn2I TCCGGA 1 cut(s) 37
KpnI GGTACC 1 cut(s) 808
Ksp22I TGATCA 2 cut(s) 463, 738
LmnI GCTCC 1 cut(s) 899
LweI GCATC 2 cut(s) 1088, 1132
MabI ACCWGGT 1 cut(s) 369
MaeI CTAG 4 cut(s) 200, 501, 801, 822
MaeII ACGT 1 cut(s) 670
MaeIII GTNAC 4 cut(s) 423, 875, 1002, 1150
MboII GAAGA 5 cut(s) 446, 457, 883, 1027, 1111
MfeI CAATTG 1 cut(s) 1112
MflI RGATCY 1 cut(s) 973
MluCI AATT 5 cut(s) 44, 56, 1008, 1112, 1191
MlyI GAGTC 2 cut(s) 490, 974
MroI TCCGGA 1 cut(s) 37
MseI TTAA 5 cut(s) 159, 231, 399, 852, 954
MslI CAYNNNNRTG 2 cut(s) 39, 1157
MspCI CTTAAG 2 cut(s) 158, 230
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 371, 458
MunI CAATTG 1 cut(s) 1112
Mva1269I GAATGC 1 cut(s) 887
MvaI CCWGG 2 cut(s) 371, 458
MvnI CGCG 1 cut(s) 721
MwoI GCNNNNNNNGC 4 cut(s) 29, 908, 931, 1172
NlaIII CATG 3 cut(s) 1058, 1160, 1290
NlaIV GGNNCC 1 cut(s) 806
NmuCI GTSAC 3 cut(s) 423, 875, 1150
NspI RCATGY 1 cut(s) 1160
OliI CACNNNNGTG 1 cut(s) 1157
PctI GAATGC 1 cut(s) 887
PfeI GAWTC 2 cut(s) 725, 1237
Ple19I CGATCG 1 cut(s) 889
PleI GAGTC 2 cut(s) 490, 973
PpsI GAGTC 2 cut(s) 490, 973
Ppu21I YACGTR 1 cut(s) 671
Psp6I CCWGG 2 cut(s) 369, 456
PspFI CCCAGC 1 cut(s) 1106
PspGI CCWGG 2 cut(s) 369, 456
PspN4I GGNNCC 1 cut(s) 806
PstI CTGCAG 1 cut(s) 477
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 973
PvuI CGATCG 1 cut(s) 889
RsaI GTAC 3 cut(s) 406, 533, 806
RsaNI GTAC 3 cut(s) 405, 532, 805
RseI CAYNNNNRTG 2 cut(s) 39, 1157
SaqAI TTAA 5 cut(s) 159, 231, 399, 852, 954
SchI GAGTC 2 cut(s) 490, 974
ScrFI CCNGG 2 cut(s) 371, 458
SexAI ACCWGGT 1 cut(s) 369
SfaNI GCATC 2 cut(s) 1088, 1132
SfcI CTRYAG 1 cut(s) 473
SmiMI CAYNNNNRTG 2 cut(s) 39, 1157
SmlI CTYRAG 4 cut(s) 158, 230, 969, 1066
SmoI CTYRAG 4 cut(s) 158, 230, 969, 1066
Sse9I AATT 5 cut(s) 44, 56, 1008, 1112, 1191
SsiI CCGC 2 cut(s) 23, 1229
SspI AATATT 2 cut(s) 136, 1252
SspMI CTAG 4 cut(s) 200, 501, 801, 822
StyD4I CCNGG 2 cut(s) 369, 456
StyI CCWWGG 2 cut(s) 282, 800
TaaI ACNGT 3 cut(s) 115, 194, 685
TaiI ACGT 1 cut(s) 673
TaqI TCGA 5 cut(s) 60, 316, 492, 1074, 1177
TasI AATT 5 cut(s) 44, 56, 1008, 1112, 1191
TfiI GAWTC 2 cut(s) 725, 1237
Tru1I TTAA 5 cut(s) 159, 231, 399, 852, 954
Tru9I TTAA 5 cut(s) 159, 231, 399, 852, 954
TscAI CASTG 3 cut(s) 199, 307, 1005
TseFI GTSAC 3 cut(s) 423, 875, 1150
Tsp45I GTSAC 3 cut(s) 423, 875, 1150
TspDTI ATGAA 4 cut(s) 57, 267, 447, 1229
TspRI CASTG 3 cut(s) 199, 307, 1005
Vha464I CTTAAG 2 cut(s) 158, 230
XapI RAATTY 2 cut(s) 56, 1008
XbaI TCTAGA 1 cut(s) 199
XceI RCATGY 1 cut(s) 1160
XmaJI CCTAGG 1 cut(s) 800
XmiI GTMKAC 1 cut(s) 1170
XspI CTAG 4 cut(s) 200, 501, 801, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.