RNA polymerase II C-terminal domain phosphatase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PRT_C | PF08372 | 1 - 52 | 8.1e-11 | Plant phosphoribosyltransferase C-terminal |
| NIF | PF03031 | 123 - 291 | 3.5e-26 | NLI interacting factor-like phosphatase |
| BRCT | PF00533 | 342 - 413 | 2.6e-07 | BRCA1 C Terminus (BRCT) domain |
| PTCB-BRCT | PF12738 | 362 - 412 | 1e-05 | twin BRCT domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 804 |
| AccB1I | GGYRCC | 1 cut(s) | 804 |
| AccI | GTMKAC | 1 cut(s) | 1170 |
| AccII | CGCG | 1 cut(s) | 721 |
| AccIII | TCCGGA | 1 cut(s) | 37 |
| AciI | CCGC | 2 cut(s) | 23, 1229 |
| AclWI | GGATC | 2 cut(s) | 626, 668 |
| AcsI | RAATTY | 2 cut(s) | 56, 1008 |
| AcuI | CTGAAG | 2 cut(s) | 905, 1034 |
| AdeI | CACNNNGTG | 1 cut(s) | 373 |
| AfaI | GTAC | 3 cut(s) | 406, 533, 806 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 457, 525 |
| AflII | CTTAAG | 2 cut(s) | 158, 230 |
| AgsI | TTSAA | 6 cut(s) | 130, 352, 445, 871, 1030, 1131 |
| AjnI | CCWGG | 2 cut(s) | 369, 456 |
| AleI | CACNNNNGTG | 1 cut(s) | 1157 |
| AluBI | AGCT | 4 cut(s) | 66, 625, 902, 925 |
| AluI | AGCT | 4 cut(s) | 66, 625, 902, 925 |
| Alw26I | GTCTC | 4 cut(s) | 123, 233, 488, 972 |
| AlwI | GGATC | 2 cut(s) | 626, 668 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 242 |
| Aor13HI | TCCGGA | 1 cut(s) | 37 |
| AoxI | GGCC | 2 cut(s) | 527, 838 |
| ApoI | RAATTY | 2 cut(s) | 56, 1008 |
| Asp718I | GGTACC | 1 cut(s) | 804 |
| AspA2I | CCTAGG | 1 cut(s) | 800 |
| AspLEI | GCGC | 1 cut(s) | 721 |
| AsuHPI | GGTGA | 3 cut(s) | 359, 417, 631 |
| AvrII | CCTAGG | 1 cut(s) | 800 |
| AxyI | CCTNAGG | 2 cut(s) | 842, 1272 |
| BanI | GGYRCC | 1 cut(s) | 804 |
| BbsI | GAAGAC | 1 cut(s) | 452 |
| BccI | CCATC | 2 cut(s) | 583, 1096 |
| BceAI | ACGGC | 1 cut(s) | 514 |
| BciT130I | CCWGG | 2 cut(s) | 371, 458 |
| BclI | TGATCA | 2 cut(s) | 463, 738 |
| BcoDI | GTCTC | 4 cut(s) | 123, 233, 488, 972 |
| BfaI | CTAG | 4 cut(s) | 200, 501, 801, 822 |
| BfmI | CTRYAG | 1 cut(s) | 473 |
| BfrI | CTTAAG | 2 cut(s) | 158, 230 |
| BglII | AGATCT | 1 cut(s) | 973 |
| BlnI | CCTAGG | 1 cut(s) | 800 |
| Bme1390I | CCNGG | 2 cut(s) | 371, 458 |
| BmiI | GGNNCC | 1 cut(s) | 806 |
| BmrFI | CCNGG | 2 cut(s) | 371, 458 |
| BmsI | GCATC | 2 cut(s) | 1088, 1132 |
| BpiI | GAAGAC | 1 cut(s) | 452 |
| BpuEI | CTTGAG | 2 cut(s) | 954, 1087 |
| BsaAI | YACGTR | 1 cut(s) | 671 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1241 |
| BsaJI | CCNNGG | 3 cut(s) | 282, 456, 800 |
| BsaWI | WCCGGW | 1 cut(s) | 37 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 88, 103, 118, 133 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 457, 525 |
| Bse1I | ACTGG | 2 cut(s) | 558, 998 |
| Bse21I | CCTNAGG | 2 cut(s) | 842, 1272 |
| Bse3DI | GCAATG | 1 cut(s) | 1238 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1241 |
| BseAI | TCCGGA | 1 cut(s) | 37 |
| BseBI | CCWGG | 2 cut(s) | 371, 458 |
| BseDI | CCNNGG | 3 cut(s) | 282, 456, 800 |
| BseGI | GGATG | 6 cut(s) | 10, 34, 46, 55, 1087, 1282 |
| BseJI | GATNNNNATC | 1 cut(s) | 1241 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 457, 525 |
| BseMI | GCAATG | 1 cut(s) | 1238 |
| BseMII | CTCAG | 3 cut(s) | 254, 855, 1263 |
| BseNI | ACTGG | 2 cut(s) | 558, 998 |
| BseRI | GAGGAG | 1 cut(s) | 912 |
| BseYI | CCCAGC | 1 cut(s) | 1106 |
| BsgI | GTGCAG | 1 cut(s) | 1218 |
| Bsh1236I | CGCG | 1 cut(s) | 721 |
| Bsh1285I | CGRYCG | 1 cut(s) | 889 |
| BshFI | GGCC | 2 cut(s) | 529, 840 |
| BshNI | GGYRCC | 1 cut(s) | 804 |
| BsiEI | CGRYCG | 1 cut(s) | 889 |
| BsiSI | CCGG | 1 cut(s) | 38 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 457, 525 |
| BsmAI | GTCTC | 4 cut(s) | 123, 233, 488, 972 |
| BsmI | GAATGC | 1 cut(s) | 887 |
| BsnI | GGCC | 2 cut(s) | 529, 840 |
| Bsp13I | TCCGGA | 1 cut(s) | 37 |
| BspACI | CCGC | 2 cut(s) | 23, 1229 |
| BspANI | GGCC | 2 cut(s) | 529, 840 |
| BspCNI | CTCAG | 3 cut(s) | 255, 856, 1264 |
| BspEI | TCCGGA | 1 cut(s) | 37 |
| BspFNI | CGCG | 1 cut(s) | 721 |
| BspLI | GGNNCC | 1 cut(s) | 806 |
| BspMAI | CTGCAG | 1 cut(s) | 477 |
| BspPI | GGATC | 2 cut(s) | 626, 668 |
| BspT107I | GGYRCC | 1 cut(s) | 804 |
| BspTI | CTTAAG | 2 cut(s) | 158, 230 |
| BsrDI | GCAATG | 1 cut(s) | 1238 |
| BsrI | ACTGG | 2 cut(s) | 558, 998 |
| BssECI | CCNNGG | 3 cut(s) | 282, 456, 800 |
| BssT1I | CCWWGG | 2 cut(s) | 282, 800 |
| Bst2UI | CCWGG | 2 cut(s) | 371, 458 |
| Bst4CI | ACNGT | 3 cut(s) | 115, 194, 685 |
| Bst6I | CTCTTC | 2 cut(s) | 429, 866 |
| BstAFI | CTTAAG | 2 cut(s) | 158, 230 |
| BstBAI | YACGTR | 1 cut(s) | 671 |
| BstC8I | GCNNGC | 1 cut(s) | 717 |
| BstDEI | CTNAG | 5 cut(s) | 263, 842, 864, 929, 1272 |
| BstF5I | GGATG | 6 cut(s) | 10, 34, 46, 55, 1087, 1282 |
| BstFNI | CGCG | 1 cut(s) | 721 |
| BstHHI | GCGC | 1 cut(s) | 721 |
| BstMAI | GTCTC | 4 cut(s) | 123, 233, 488, 972 |
| BstMCI | CGRYCG | 1 cut(s) | 889 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 29, 908, 931, 1172 |
| BstNI | CCWGG | 2 cut(s) | 371, 458 |
| BstNSI | RCATGY | 1 cut(s) | 1160 |
| BstSCI | CCNGG | 2 cut(s) | 369, 456 |
| BstSFI | CTRYAG | 1 cut(s) | 473 |
| BstUI | CGCG | 1 cut(s) | 721 |
| BstV2I | GAAGAC | 1 cut(s) | 452 |
| BstX2I | RGATCY | 1 cut(s) | 973 |
| BstYI | RGATCY | 1 cut(s) | 973 |
| Bsu36I | CCTNAGG | 2 cut(s) | 842, 1272 |
| BsuRI | GGCC | 2 cut(s) | 529, 840 |
| BtsCI | GGATG | 6 cut(s) | 10, 34, 46, 55, 1087, 1282 |
| BtsI | GCAGTG | 1 cut(s) | 307 |
| BtsIMutI | CAGTG | 3 cut(s) | 199, 307, 1005 |
| Cac8I | GCNNGC | 1 cut(s) | 717 |
| CaiI | CAGNNNCTG | 1 cut(s) | 242 |
| CfoI | GCGC | 1 cut(s) | 721 |
| CseI | GACGC | 1 cut(s) | 1181 |
| CsiI | ACCWGGT | 1 cut(s) | 369 |
| Csp6I | GTAC | 3 cut(s) | 405, 532, 805 |
| CviAII | CATG | 3 cut(s) | 1055, 1157, 1287 |
| CviQI | GTAC | 3 cut(s) | 405, 532, 805 |
| DdeI | CTNAG | 5 cut(s) | 263, 842, 864, 929, 1272 |
| DraIII | CACNNNGTG | 1 cut(s) | 373 |
| Eam1104I | CTCTTC | 2 cut(s) | 429, 866 |
| EarI | CTCTTC | 2 cut(s) | 429, 866 |
| EciI | GGCGGA | 1 cut(s) | 38 |
| Eco130I | CCWWGG | 2 cut(s) | 282, 800 |
| Eco57I | CTGAAG | 2 cut(s) | 905, 1034 |
| Eco81I | CCTNAGG | 2 cut(s) | 842, 1272 |
| EcoRI | GAATTC | 1 cut(s) | 56 |
| EcoRII | CCWGG | 2 cut(s) | 369, 456 |
| EcoT14I | CCWWGG | 2 cut(s) | 282, 800 |
| ErhI | CCWWGG | 2 cut(s) | 282, 800 |
| FaeI | CATG | 3 cut(s) | 1058, 1160, 1290 |
| FatI | CATG | 3 cut(s) | 1054, 1156, 1286 |
| FbaI | TGATCA | 2 cut(s) | 463, 738 |
| FblI | GTMKAC | 1 cut(s) | 1170 |
| FokI | GGATG | 6 cut(s) | 17, 21, 53, 62, 1074, 1289 |
| FspBI | CTAG | 4 cut(s) | 200, 501, 801, 822 |
| GlaI | GCGC | 1 cut(s) | 720 |
| GsaI | CCCAGC | 1 cut(s) | 1110 |
| HaeIII | GGCC | 2 cut(s) | 529, 840 |
| HapII | CCGG | 1 cut(s) | 38 |
| HgaI | GACGC | 1 cut(s) | 1181 |
| HhaI | GCGC | 1 cut(s) | 721 |
| Hin1II | CATG | 3 cut(s) | 1058, 1160, 1290 |
| Hin6I | GCGC | 1 cut(s) | 719 |
| HinP1I | GCGC | 1 cut(s) | 719 |
| HinfI | GANTC | 4 cut(s) | 496, 725, 965, 1237 |
| HpaII | CCGG | 1 cut(s) | 38 |
| HphI | GGTGA | 3 cut(s) | 359, 417, 631 |
| Hpy166II | GTNNAC | 2 cut(s) | 583, 1171 |
| Hpy188I | TCNGA | 8 cut(s) | 12, 88, 123, 187, 264, 865, 995, 1014 |
| Hpy8I | GTNNAC | 2 cut(s) | 583, 1171 |
| HpyAV | CCTTC | 1 cut(s) | 1202 |
| HpyCH4III | ACNGT | 3 cut(s) | 115, 194, 685 |
| HpyCH4IV | ACGT | 1 cut(s) | 670 |
| HpyCH4V | TGCA | 7 cut(s) | 32, 475, 638, 911, 1145, 1166, 1199 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 29, 908, 931, 1172 |
| HpyF3I | CTNAG | 5 cut(s) | 263, 842, 864, 929, 1272 |
| HpySE526I | ACGT | 1 cut(s) | 670 |
| Hsp92II | CATG | 3 cut(s) | 1058, 1160, 1290 |
| HspAI | GCGC | 1 cut(s) | 719 |
| Kpn2I | TCCGGA | 1 cut(s) | 37 |
| KpnI | GGTACC | 1 cut(s) | 808 |
| Ksp22I | TGATCA | 2 cut(s) | 463, 738 |
| LmnI | GCTCC | 1 cut(s) | 899 |
| LweI | GCATC | 2 cut(s) | 1088, 1132 |
| MabI | ACCWGGT | 1 cut(s) | 369 |
| MaeI | CTAG | 4 cut(s) | 200, 501, 801, 822 |
| MaeII | ACGT | 1 cut(s) | 670 |
| MaeIII | GTNAC | 4 cut(s) | 423, 875, 1002, 1150 |
| MboII | GAAGA | 5 cut(s) | 446, 457, 883, 1027, 1111 |
| MfeI | CAATTG | 1 cut(s) | 1112 |
| MflI | RGATCY | 1 cut(s) | 973 |
| MluCI | AATT | 5 cut(s) | 44, 56, 1008, 1112, 1191 |
| MlyI | GAGTC | 2 cut(s) | 490, 974 |
| MroI | TCCGGA | 1 cut(s) | 37 |
| MseI | TTAA | 5 cut(s) | 159, 231, 399, 852, 954 |
| MslI | CAYNNNNRTG | 2 cut(s) | 39, 1157 |
| MspCI | CTTAAG | 2 cut(s) | 158, 230 |
| MspI | CCGG | 1 cut(s) | 38 |
| MspR9I | CCNGG | 2 cut(s) | 371, 458 |
| MunI | CAATTG | 1 cut(s) | 1112 |
| Mva1269I | GAATGC | 1 cut(s) | 887 |
| MvaI | CCWGG | 2 cut(s) | 371, 458 |
| MvnI | CGCG | 1 cut(s) | 721 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 29, 908, 931, 1172 |
| NlaIII | CATG | 3 cut(s) | 1058, 1160, 1290 |
| NlaIV | GGNNCC | 1 cut(s) | 806 |
| NmuCI | GTSAC | 3 cut(s) | 423, 875, 1150 |
| NspI | RCATGY | 1 cut(s) | 1160 |
| OliI | CACNNNNGTG | 1 cut(s) | 1157 |
| PctI | GAATGC | 1 cut(s) | 887 |
| PfeI | GAWTC | 2 cut(s) | 725, 1237 |
| Ple19I | CGATCG | 1 cut(s) | 889 |
| PleI | GAGTC | 2 cut(s) | 490, 973 |
| PpsI | GAGTC | 2 cut(s) | 490, 973 |
| Ppu21I | YACGTR | 1 cut(s) | 671 |
| Psp6I | CCWGG | 2 cut(s) | 369, 456 |
| PspFI | CCCAGC | 1 cut(s) | 1106 |
| PspGI | CCWGG | 2 cut(s) | 369, 456 |
| PspN4I | GGNNCC | 1 cut(s) | 806 |
| PstI | CTGCAG | 1 cut(s) | 477 |
| PstNI | CAGNNNCTG | 1 cut(s) | 242 |
| PsuI | RGATCY | 1 cut(s) | 973 |
| PvuI | CGATCG | 1 cut(s) | 889 |
| RsaI | GTAC | 3 cut(s) | 406, 533, 806 |
| RsaNI | GTAC | 3 cut(s) | 405, 532, 805 |
| RseI | CAYNNNNRTG | 2 cut(s) | 39, 1157 |
| SaqAI | TTAA | 5 cut(s) | 159, 231, 399, 852, 954 |
| SchI | GAGTC | 2 cut(s) | 490, 974 |
| ScrFI | CCNGG | 2 cut(s) | 371, 458 |
| SexAI | ACCWGGT | 1 cut(s) | 369 |
| SfaNI | GCATC | 2 cut(s) | 1088, 1132 |
| SfcI | CTRYAG | 1 cut(s) | 473 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 39, 1157 |
| SmlI | CTYRAG | 4 cut(s) | 158, 230, 969, 1066 |
| SmoI | CTYRAG | 4 cut(s) | 158, 230, 969, 1066 |
| Sse9I | AATT | 5 cut(s) | 44, 56, 1008, 1112, 1191 |
| SsiI | CCGC | 2 cut(s) | 23, 1229 |
| SspI | AATATT | 2 cut(s) | 136, 1252 |
| SspMI | CTAG | 4 cut(s) | 200, 501, 801, 822 |
| StyD4I | CCNGG | 2 cut(s) | 369, 456 |
| StyI | CCWWGG | 2 cut(s) | 282, 800 |
| TaaI | ACNGT | 3 cut(s) | 115, 194, 685 |
| TaiI | ACGT | 1 cut(s) | 673 |
| TaqI | TCGA | 5 cut(s) | 60, 316, 492, 1074, 1177 |
| TasI | AATT | 5 cut(s) | 44, 56, 1008, 1112, 1191 |
| TfiI | GAWTC | 2 cut(s) | 725, 1237 |
| Tru1I | TTAA | 5 cut(s) | 159, 231, 399, 852, 954 |
| Tru9I | TTAA | 5 cut(s) | 159, 231, 399, 852, 954 |
| TscAI | CASTG | 3 cut(s) | 199, 307, 1005 |
| TseFI | GTSAC | 3 cut(s) | 423, 875, 1150 |
| Tsp45I | GTSAC | 3 cut(s) | 423, 875, 1150 |
| TspDTI | ATGAA | 4 cut(s) | 57, 267, 447, 1229 |
| TspRI | CASTG | 3 cut(s) | 199, 307, 1005 |
| Vha464I | CTTAAG | 2 cut(s) | 158, 230 |
| XapI | RAATTY | 2 cut(s) | 56, 1008 |
| XbaI | TCTAGA | 1 cut(s) | 199 |
| XceI | RCATGY | 1 cut(s) | 1160 |
| XmaJI | CCTAGG | 1 cut(s) | 800 |
| XmiI | GTMKAC | 1 cut(s) | 1170 |
| XspI | CTAG | 4 cut(s) | 200, 501, 801, 822 |