Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001716.1

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Reverse (-)

71457 .. 72681

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001716.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atgatgagtgtggctaccgtctctccaattttgcacaacatagataaccttgttgggtttctcaagagaggacgaggacaacaggattctgattacagtcaactagaattgatagagaggagaaaaaggcgtaacataatagagacgactactaatgaagaagcaagatttgcagatgaggagaaatccgggtcttctggagtgagatttgcgtacttacacaagggcttagggcttaatcatgatgaaattgatagtttacgaaacgataacactaatatcttattgttgcaccataagaaacttcatttagtacttgacctagaccacaccctgctgaattccactttccttgataatatgtcaccagacgaacaatatttgaagactcaaacccaatctgatcattctctgcaacatgttcacattgtgaacactcccggtacgcaattgatgaccaagttcaggccttatattatgacatttttaatgcaagctagtcaaatgtttgagctgtccatttacaccacgggtagtcgagactatgcgctcgaaatggctaagttgcttgatcccagaaatcaaatctttggtggtagagtgatctcacgtagcgagagcacaaaagaagatcgaaagggtctagatgccctgcttgcccgagattctgctgttttgatccttgatgatacaaaagatgtatggacagttgacaaccaggataatgtaataataatgccaagataccatttctttagatctagttgtcaacaatttggcctcagtagtaagccttattccgagttaaagactgatgaatgcatgtgttcggctgatactcatcctttgtggaagatggaggagcagttaggagctatttgttcaacacaagtggatccaacagtcacgtacatacgtggttgcagccgatgctcgaacacaaaaatctcgttgggcagtagaagaaggcaagtttttggtgaatccgcagtggattcatactgcaaatttcatgtggcaaaagcaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

343

Amino Acids

39.12

Weight (kDa)

6.5

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	987
AclWI	GGATC	4 cut(s)	566, 673, 890, 903
AcsI	RAATTY	2 cut(s)	340, 1007
AdeI	CACNNNGTG	1 cut(s)	430
AfaI	GTAC	4 cut(s)	215, 315, 445, 911
AfiI	CCNNNNNNNGG	1 cut(s)	465
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	2 cut(s)	385, 885
AjnI	CCWGG	1 cut(s)	717
AluBI	AGCT	3 cut(s)	497, 514, 875
AluI	AGCT	3 cut(s)	497, 514, 875
Alw21I	GWGCWC	1 cut(s)	623
Alw26I	GTCTC	3 cut(s)	25, 137, 534
AlwI	GGATC	4 cut(s)	566, 673, 890, 903
Ama87I	CYCGRG	1 cut(s)	660
AoxI	GGCC	2 cut(s)	467, 778
ApeKI	GCWGC	1 cut(s)	924
ApoI	RAATTY	2 cut(s)	340, 1007
AspLEI	GCGC	1 cut(s)	550
AsuC2I	CCSGG	2 cut(s)	190, 441
AsuHPI	GGTGA	2 cut(s)	357, 992
AvaI	CYCGRG	1 cut(s)	660
BamHI	GGATCC	1 cut(s)	895
BbsI	GAAGAC	2 cut(s)	186, 392
Bbv12I	GWGCWC	1 cut(s)	623
BbvI	GCAGC	1 cut(s)	936
BccI	CCATC	1 cut(s)	850
BciT130I	CCWGG	1 cut(s)	719
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	2 cut(s)	190, 441
BcoDI	GTCTC	3 cut(s)	25, 137, 534
BfaI	CTAG	5 cut(s)	104, 323, 498, 644, 762
BglII	AGATCT	1 cut(s)	758
BisI	GCNGC	1 cut(s)	925
BlsI	GCNGC	1 cut(s)	926
BmcAI	AGTACT	1 cut(s)	315
Bme1390I	CCNGG	3 cut(s)	190, 441, 719
BmeT110I	CYCGRG	1 cut(s)	660
BmiI	GGNNCC	1 cut(s)	897
BmrFI	CCNGG	3 cut(s)	190, 441, 719
BmsI	GCATC	2 cut(s)	637, 920
BpiI	GAAGAC	2 cut(s)	186, 392
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	2 cut(s)	190, 441
BsaAI	YACGTR	3 cut(s)	611, 909, 917
BsaBI	GATNNNNATC	1 cut(s)	840
BsaJI	CCNNGG	1 cut(s)	528
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 851, 881
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse8I	GATNNNNATC	1 cut(s)	840
BseBI	CCWGG	1 cut(s)	719
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	1 cut(s)	841
BseJI	GATNNNNATC	1 cut(s)	840
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	796
BseRI	GAGGAG	3 cut(s)	133, 194, 875
BseXI	GCAGC	1 cut(s)	936
BshFI	GGCC	2 cut(s)	469, 780
BsiHKAI	GWGCWC	1 cut(s)	623
BsiHKCI	CYCGRG	1 cut(s)	660
BsiSI	CCGG	2 cut(s)	189, 441
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	3 cut(s)	25, 137, 534
BsmBI	CGTCTC	2 cut(s)	25, 137
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	2 cut(s)	469, 780
BsoBI	CYCGRG	1 cut(s)	660
Bsp1286I	GDGCHC	1 cut(s)	623
Bsp143I	GATC	7 cut(s)	403, 571, 603, 631, 678, 758, 895
BspACI	CCGC	1 cut(s)	987
BspANI	GGCC	2 cut(s)	469, 780
BspCNI	CTCAG	1 cut(s)	795
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	897
BspPI	GGATC	4 cut(s)	566, 673, 890, 903
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	7 cut(s)	403, 571, 603, 631, 678, 758, 895
Bst2UI	CCWGG	1 cut(s)	719
Bst4CI	ACNGT	4 cut(s)	19, 98, 709, 904
BstAPI	GCANNNNNTGC	2 cut(s)	170, 930
BstBAI	YACGTR	3 cut(s)	611, 909, 917
BstC8I	GCNNGC	2 cut(s)	495, 657
BstDEI	CTNAG	3 cut(s)	229, 561, 782
BstDSI	CCRYGG	1 cut(s)	528
BstF5I	GGATG	1 cut(s)	841
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	7 cut(s)	406, 574, 606, 634, 681, 761, 898
BstMAI	GTCTC	3 cut(s)	25, 137, 534
BstMBI	GATC	7 cut(s)	403, 571, 603, 631, 678, 758, 895
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 656, 930
BstNI	CCWGG	1 cut(s)	719
BstNSI	RCATGY	2 cut(s)	422, 826
BstSCI	CCNGG	3 cut(s)	188, 439, 717
BstV1I	GCAGC	1 cut(s)	936
BstV2I	GAAGAC	2 cut(s)	186, 392
BstX2I	RGATCY	2 cut(s)	758, 895
BstYI	RGATCY	2 cut(s)	758, 895
BsuRI	GGCC	2 cut(s)	469, 780
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	841
BtsI	GCAGTG	1 cut(s)	996
BtsIMutI	CAGTG	1 cut(s)	996
Cac8I	GCNNGC	2 cut(s)	495, 657
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	550
Csp6I	GTAC	4 cut(s)	214, 314, 444, 910
CspCI	CAANNNNNGTGG	4 cut(s)	334, 369, 873, 908
CviAII	CATG	4 cut(s)	242, 419, 823, 1013
CviQI	GTAC	4 cut(s)	214, 314, 444, 910
DdeI	CTNAG	3 cut(s)	229, 561, 782
DpnI	GATC	7 cut(s)	405, 573, 605, 633, 680, 760, 897
DpnII	GATC	7 cut(s)	403, 571, 603, 631, 678, 758, 895
DraIII	CACNNNGTG	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	469
Eco88I	CYCGRG	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	717
EcoT22I	ATGCAT	1 cut(s)	824
Esp3I	CGTCTC	2 cut(s)	25, 137
FaeI	CATG	4 cut(s)	245, 422, 826, 1016
FatI	CATG	4 cut(s)	241, 418, 822, 1012
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	925
FokI	GGATG	1 cut(s)	828
Fsp4HI	GCNGC	1 cut(s)	925
FspBI	CTAG	5 cut(s)	104, 323, 498, 644, 762
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	1 cut(s)	925
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	469, 780
HapII	CCGG	2 cut(s)	189, 441
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	4 cut(s)	245, 422, 826, 1016
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	3 cut(s)	101, 712, 770
HindII	GTYRAC	3 cut(s)	101, 712, 770
HinfI	GANTC	5 cut(s)	86, 388, 665, 983, 995
HpaII	CCGG	2 cut(s)	189, 441
HphI	GGTGA	2 cut(s)	357, 992
Hpy166II	GTNNAC	6 cut(s)	101, 260, 424, 433, 712, 770
Hpy188I	TCNGA	3 cut(s)	91, 403, 802
Hpy188III	TCNNGA	5 cut(s)	64, 198, 242, 539, 644
Hpy8I	GTNNAC	6 cut(s)	101, 260, 424, 433, 712, 770
HpyAV	CCTTC	1 cut(s)	960
HpyCH4III	ACNGT	4 cut(s)	19, 98, 709, 904
HpyCH4IV	ACGT	3 cut(s)	610, 908, 916
HpyCH4V	TGCA	8 cut(s)	34, 173, 292, 415, 493, 822, 924, 1005
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 656, 930
HpyF3I	CTNAG	3 cut(s)	229, 561, 782
HpySE526I	ACGT	3 cut(s)	610, 908, 916
Hsp92II	CATG	4 cut(s)	245, 422, 826, 1016
HspAI	GCGC	1 cut(s)	548
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	7 cut(s)	403, 571, 603, 631, 678, 758, 895
LmnI	GCTCC	2 cut(s)	862, 872
Lsp1109I	GCAGC	1 cut(s)	936
LweI	GCATC	2 cut(s)	637, 920
MaeI	CTAG	5 cut(s)	104, 323, 498, 644, 762
MaeII	ACGT	3 cut(s)	610, 908, 916
MaeIII	GTNAC	3 cut(s)	131, 363, 904
MalI	GATC	7 cut(s)	405, 573, 605, 633, 680, 760, 897
MboI	GATC	7 cut(s)	403, 571, 603, 631, 678, 758, 895
MboII	GAAGA	6 cut(s)	170, 186, 397, 641, 865, 975
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	2 cut(s)	758, 895
MhlI	GDGCHC	1 cut(s)	623
MluCI	AATT	7 cut(s)	27, 107, 249, 340, 449, 773, 1007
MlyI	GAGTC	1 cut(s)	382
MmeI	TCCRAC	1 cut(s)	923
MnlI	CCTC	6 cut(s)	62, 68, 111, 172, 791, 853
Mph1103I	ATGCAT	1 cut(s)	824
MseI	TTAA	3 cut(s)	237, 488, 806
MspI	CCGG	2 cut(s)	189, 441
MspR9I	CCNGG	3 cut(s)	190, 441, 719
MunI	CAATTG	1 cut(s)	449
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	1 cut(s)	719
MwoI	GCNNNNNNNGC	3 cut(s)	170, 656, 930
NciI	CCSGG	2 cut(s)	190, 441
NdeII	GATC	7 cut(s)	403, 571, 603, 631, 678, 758, 895
NlaIII	CATG	4 cut(s)	245, 422, 826, 1016
NlaIV	GGNNCC	1 cut(s)	897
NmuCI	GTSAC	2 cut(s)	363, 904
NsiI	ATGCAT	1 cut(s)	824
NspI	RCATGY	2 cut(s)	422, 826
PagI	TCATGA	1 cut(s)	241
PceI	AGGCCT	1 cut(s)	469
PciI	ACATGT	1 cut(s)	418
PctI	GAATGC	1 cut(s)	824
PfeI	GAWTC	4 cut(s)	86, 665, 983, 995
PkrI	GCNGC	1 cut(s)	926
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
Ppu21I	YACGTR	3 cut(s)	611, 909, 917
PscI	ACATGT	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	717
PspN4I	GGNNCC	1 cut(s)	897
PsuI	RGATCY	2 cut(s)	758, 895
RsaI	GTAC	4 cut(s)	215, 315, 445, 911
RsaNI	GTAC	4 cut(s)	214, 314, 444, 910
SaqAI	TTAA	3 cut(s)	237, 488, 806
SatI	GCNGC	1 cut(s)	925
Sau3AI	GATC	7 cut(s)	403, 571, 603, 631, 678, 758, 895
ScaI	AGTACT	1 cut(s)	315
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	3 cut(s)	190, 441, 719
SduI	GDGCHC	1 cut(s)	623
SetI	ASST	9 cut(s)	51, 324, 499, 516, 613, 877, 911, 919, 1031
SfaNI	GCATC	2 cut(s)	637, 920
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	7 cut(s)	27, 107, 249, 340, 449, 773, 1007
SseBI	AGGCCT	1 cut(s)	469
SsiI	CCGC	1 cut(s)	987
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	5 cut(s)	104, 323, 498, 644, 762
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	3 cut(s)	188, 439, 717
TaaI	ACNGT	4 cut(s)	19, 98, 709, 904
TaiI	ACGT	3 cut(s)	613, 911, 919
TaqI	TCGA	4 cut(s)	538, 552, 634, 935
TasI	AATT	7 cut(s)	27, 107, 249, 340, 449, 773, 1007
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	4 cut(s)	86, 665, 983, 995
Tru1I	TTAA	3 cut(s)	237, 488, 806
Tru9I	TTAA	3 cut(s)	237, 488, 806
TscAI	CASTG	1 cut(s)	996
TseFI	GTSAC	2 cut(s)	363, 904
TseI	GCWGC	1 cut(s)	924
Tsp45I	GTSAC	2 cut(s)	363, 904
TspDTI	ATGAA	6 cut(s)	171, 261, 296, 831, 987, 1001
TspRI	CASTG	1 cut(s)	996
XapI	RAATTY	2 cut(s)	340, 1007
XbaI	TCTAGA	1 cut(s)	643
XceI	RCATGY	2 cut(s)	422, 826
XspI	CTAG	5 cut(s)	104, 323, 498, 644, 762
ZrmI	AGTACT	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.