Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

61551327 .. 61554745

Gene Structure 3419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG461400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGTCTGGCCGAGTCTCCAGTACACTCTTCTAGCATTGATGACTTTGCTGGGTTGCTTGAGAGAGAACTACAGTCCGGTTCTTTGGAGTCATCAACAGGGGATGAAGATGAAGAAGATAAAGAAGCTGATGGTGATGATGATGGCAGTGATGTTGAAACTGAGAGCAGGATAAAAAGGCGCAAAGGAGATAATTTGGAAAGCGTAGAGGAAACTAATGGGTCGATTTCACAAGGACGTCCAGAACAAAAGTTGATTGAGCAGTCCGGTGTGACATTTGGGTACATACACAGGGGATTGAGACTTAATAATGATGAAATCGACCGGTTATGCAACACAGACATTAAGAAATCGCTAAATAATAAGAAACTTTATTTGGTACTGGATCTTGATCATACACTGCTAAATTCCACCCAGCTGAATCATATGACGGCAGAAGAAGAATATTTGATGAGGCCACCAGATTCGCTGCCAGATGAGTTGAAAGGCAGCCTTTTCAGACTGGACTTTATGTATGTGACGACCAAGTTAAGGCCCTTCGTTAGGACATTTTTGAAGGAAGCCAGTGAAATGTTTGAAATATCTAGTTGTGCCCAATTTGGGTTCACTGGTGAGTCTCTTTCAGAGTTGAAGAGTGATGAGAGTGAGCCTGAAGGAGCTCTTGCAAATGTTCTTGACCTTCTTAAGCGAATCCACAAGTTTTTCTTCTATGAATTGGGAGGCAATCTTATAGATAGAGACGTAAGGCAGGAAGGAAGTCTTGAAGGGGTGCAAAGTTGTTTTCAGCCGTATAATTCCTTCAAAAGTCCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

271

Amino Acids

30.53

Weight (kDa)

4.56

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	125 - 195	2e-07	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	241
AclWI	GGATC	1 cut(s)	393
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	672
AcyI	GRCGYC	1 cut(s)	238
AfaI	GTAC	3 cut(s)	24, 284, 381
AfiI	CCNNNNNNNGG	3 cut(s)	531, 543, 600
AflII	CTTAAG	1 cut(s)	683
AgeI	ACCGGT	1 cut(s)	324
AgsI	TTSAA	7 cut(s)	158, 484, 556, 578, 631, 764, 802
AjnI	CCWGG	1 cut(s)	808
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	3 cut(s)	128, 418, 659
AluI	AGCT	3 cut(s)	128, 418, 659
Alw21I	GWGCWC	1 cut(s)	661
Alw26I	GTCTC	4 cut(s)	21, 295, 621, 732
AlwI	GGATC	1 cut(s)	393
AoxI	GGCC	3 cut(s)	9, 455, 533
ApeKI	GCWGC	2 cut(s)	469, 489
ApoI	RAATTY	1 cut(s)	406
AsiGI	ACCGGT	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	534
AsuHPI	GGTGA	2 cut(s)	146, 623
BaeGI	GKGCMC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	661
BarI	GAAGNNNNNNTAC	2 cut(s)	782, 814
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	2 cut(s)	456, 501
BccI	CCATC	2 cut(s)	125, 137
BceAI	ACGGC	2 cut(s)	447, 772
BciT130I	CCWGG	1 cut(s)	810
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	4 cut(s)	21, 295, 621, 732
BfaI	CTAG	2 cut(s)	33, 585
BfmI	CTRYAG	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	683
BisI	GCNGC	2 cut(s)	470, 490
BlsI	GCNGC	2 cut(s)	471, 491
Bme1390I	CCNGG	1 cut(s)	810
BmgT120I	GGNCC	1 cut(s)	534
BmrFI	CCNGG	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	238
BsaWI	WCCGGW	3 cut(s)	77, 266, 324
Bsc4I	CCNNNNNNNGG	3 cut(s)	531, 543, 600
Bse118I	RCCGGY	1 cut(s)	324
Bse1I	ACTGG	5 cut(s)	20, 387, 507, 564, 613
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	810
BseGI	GGATG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	3 cut(s)	531, 543, 600
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	5 cut(s)	20, 387, 507, 564, 613
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	2 cut(s)	456, 501
BseYI	CCCAGC	2 cut(s)	50, 414
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	3 cut(s)	11, 457, 535
BshTI	ACCGGT	1 cut(s)	324
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	661
BsiSI	CCGG	3 cut(s)	78, 267, 325
BslI	CCNNNNNNNGG	3 cut(s)	531, 543, 600
BsmAI	GTCTC	4 cut(s)	21, 295, 621, 732
BsmBI	CGTCTC	1 cut(s)	732
BsnI	GGCC	3 cut(s)	11, 457, 535
Bsp1286I	GDGCHC	2 cut(s)	595, 661
Bsp143I	GATC	2 cut(s)	385, 391
BspANI	GGCC	3 cut(s)	11, 457, 535
BspCNI	CTCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	393
BspTI	CTTAAG	1 cut(s)	683
BsrFI	RCCGGY	1 cut(s)	324
BsrI	ACTGG	5 cut(s)	20, 387, 507, 564, 613
BssAI	RCCGGY	1 cut(s)	324
BssMI	GATC	2 cut(s)	385, 391
BssNI	GRCGYC	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	810
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	2 cut(s)	34, 626
BstACI	GRCGYC	1 cut(s)	238
BstAFI	CTTAAG	1 cut(s)	683
BstDEI	CTNAG	1 cut(s)	162
BstENI	CCTNNNNNAGG	1 cut(s)	541
BstF5I	GGATG	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	2 cut(s)	388, 394
BstMAI	GTCTC	4 cut(s)	21, 295, 621, 732
BstMBI	GATC	2 cut(s)	385, 391
BstMCI	CGRYCG	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	810
BstSCI	CCNGG	1 cut(s)	808
BstSFI	CTRYAG	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	595
BstV1I	GCAGC	2 cut(s)	456, 501
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	11, 457, 535
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	2 cut(s)	154, 398
BtsIMutI	CAGTG	4 cut(s)	154, 398, 571, 606
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	534
Csp6I	GTAC	3 cut(s)	23, 283, 380
CspAI	ACCGGT	1 cut(s)	324
CviQI	GTAC	3 cut(s)	23, 283, 380
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	387, 393
DpnII	GATC	2 cut(s)	385, 391
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	34, 626
EarI	CTCTTC	2 cut(s)	34, 626
Ecl136II	GAGCTC	1 cut(s)	659
Eco24I	GRGCYC	1 cut(s)	661
Eco53kI	GAGCTC	1 cut(s)	659
Eco57I	CTGAAG	1 cut(s)	672
EcoICRI	GAGCTC	1 cut(s)	659
EcoNI	CCTNNNNNAGG	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	808
EcoT38I	GRGCYC	1 cut(s)	661
Esp3I	CGTCTC	1 cut(s)	732
FalI	AAGNNNNNCTT	8 cut(s)	477, 509, 645, 677, 689, 721, 744, 776
FauNDI	CATATG	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	470, 490
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	661
Fsp4HI	GCNGC	2 cut(s)	470, 490
FspBI	CTAG	2 cut(s)	33, 585
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	2 cut(s)	470, 490
GsaI	CCCAGC	2 cut(s)	54, 418
HaeIII	GGCC	3 cut(s)	11, 457, 535
HapII	CCGG	3 cut(s)	78, 267, 325
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	7 cut(s)	4, 14, 89, 421, 464, 614, 690
HpaII	CCGG	3 cut(s)	78, 267, 325
HphI	GGTGA	2 cut(s)	146, 623
Hpy166II	GTNNAC	2 cut(s)	25, 606
Hpy188I	TCNGA	2 cut(s)	500, 625
Hpy188III	TCNNGA	4 cut(s)	242, 389, 674, 761
Hpy8I	GTNNAC	2 cut(s)	25, 606
HpyAV	CCTTC	7 cut(s)	547, 550, 647, 689, 746, 758, 808
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	2 cut(s)	238, 741
HpyCH4V	TGCA	3 cut(s)	333, 665, 772
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	2 cut(s)	238, 741
Hsp92I	GRCGYC	1 cut(s)	238
HspAI	GCGC	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	385, 391
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	2 cut(s)	456, 501
MaeI	CTAG	2 cut(s)	33, 585
MaeII	ACGT	2 cut(s)	238, 741
MaeIII	GTNAC	2 cut(s)	271, 517
MalI	GATC	2 cut(s)	387, 393
MboI	GATC	2 cut(s)	385, 391
MboII	GAAGA	8 cut(s)	21, 119, 125, 128, 449, 452, 643, 697
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	2 cut(s)	595, 661
MluCI	AATT	5 cut(s)	193, 406, 596, 713, 793
MlyI	GAGTC	4 cut(s)	13, 23, 98, 623
MnlI	CCTC	3 cut(s)	202, 447, 713
MseI	TTAA	4 cut(s)	306, 345, 530, 684
MspA1I	CMGCKG	1 cut(s)	418
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	3 cut(s)	78, 267, 325
MspR9I	CCNGG	1 cut(s)	810
MvaI	CCWGG	1 cut(s)	810
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	2 cut(s)	385, 391
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	271, 517
PfeI	GAWTC	3 cut(s)	421, 464, 690
PinAI	ACCGGT	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	471, 491
PleI	GAGTC	4 cut(s)	12, 22, 97, 622
PpsI	GAGTC	4 cut(s)	12, 22, 97, 622
Psp124BI	GAGCTC	1 cut(s)	661
Psp6I	CCWGG	1 cut(s)	808
PspFI	CCCAGC	2 cut(s)	50, 414
PspGI	CCWGG	1 cut(s)	808
PspPI	GGNCC	1 cut(s)	534
PsuI	RGATCY	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	418
RsaI	GTAC	3 cut(s)	24, 284, 381
RsaNI	GTAC	3 cut(s)	23, 283, 380
SacI	GAGCTC	1 cut(s)	661
SaqAI	TTAA	4 cut(s)	306, 345, 530, 684
SatI	GCNGC	2 cut(s)	470, 490
Sau3AI	GATC	2 cut(s)	385, 391
Sau96I	GGNCC	1 cut(s)	534
SchI	GAGTC	4 cut(s)	13, 23, 98, 623
ScrFI	CCNGG	1 cut(s)	810
SduI	GDGCHC	2 cut(s)	595, 661
SetI	ASST	6 cut(s)	130, 241, 420, 661, 681, 744
SfcI	CTRYAG	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	59, 683
SmoI	CTYRAG	2 cut(s)	59, 683
Sse9I	AATT	5 cut(s)	193, 406, 596, 713, 793
SspI	AATATT	1 cut(s)	446
SspMI	CTAG	2 cut(s)	33, 585
SstI	GAGCTC	1 cut(s)	661
StyD4I	CCNGG	1 cut(s)	808
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	2 cut(s)	241, 744
TaqI	TCGA	2 cut(s)	224, 321
TasI	AATT	5 cut(s)	193, 406, 596, 713, 793
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	3 cut(s)	421, 464, 690
Tru1I	TTAA	4 cut(s)	306, 345, 530, 684
Tru9I	TTAA	4 cut(s)	306, 345, 530, 684
TscAI	CASTG	4 cut(s)	154, 405, 571, 613
TseFI	GTSAC	2 cut(s)	271, 517
TseI	GCWGC	2 cut(s)	469, 489
Tsp45I	GTSAC	2 cut(s)	271, 517
TspDTI	ATGAA	4 cut(s)	120, 126, 330, 726
TspRI	CASTG	4 cut(s)	154, 405, 571, 613
Vha464I	CTTAAG	1 cut(s)	683
XagI	CCTNNNNNAGG	1 cut(s)	541
XapI	RAATTY	1 cut(s)	406
XspI	CTAG	2 cut(s)	33, 585
ZraI	GACGTC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.