Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Reverse (-)

65153927 .. 65159429

Gene Structure 5503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51721

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCTTTGGCAAGAAAGTGCTGTTTTGATACCGGATGATACAGAAAATGCATGGATAAAGCACAAGGACAATCTAATTTTGATGGAAATATATCATTTTTTTAGATCTAGTTGTTCCCAATTTGGGTTCACTTGTGAGTCTCTTTCAGAGTTGAAGAGTGATGAGAGTGAGCCTGAAGGAGCTCTTGCAAATGTTCTTGACCTTCTGAAGCGAATCCACAAGATTTTCTTTTATGAATTGGGAGGCAATCTTTTATATAGAGACGTAAGGCAGGTTCTGAAAACTGTTAGGAAGGAAGTCTTGAAGGGGTGCAAAGTTGTGTTCAGCCGTATAATTCCTTCAAAAGTCCAGGCTGATAATCATCACCCGTGGAAGATGGCAGAGCAGCAAATTATATGTGGCGAAAGCAACCTGAAGACAAGTTTCCTGTCAGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

146

Amino Acids

16.89

Weight (kDa)

6.96

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AcuI	CTGAAG	3 cut(s)	195, 227, 434
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	154, 304, 342
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	2 cut(s)	144, 255
AlwNI	CAGNNNCTG	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	184
BarI	GAAGNNNNNNTAC	2 cut(s)	322, 354
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	2 cut(s)	76, 370
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	2 cut(s)	144, 255
BfaI	CTAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	262
BglII	AGATCT	1 cut(s)	104
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	40
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	144, 255
BsmBI	CGTCTC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	104
BspMI	ACCTGC	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	368
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	2 cut(s)	144, 255
BstMBI	GATC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	277
CviAII	CATG	1 cut(s)	51
CviJI	RGCY	4 cut(s)	172, 182, 327, 353
CviKI_1	RGCY	4 cut(s)	172, 182, 327, 353
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	3 cut(s)	195, 227, 434
EcoICRI	GAGCTC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	1 cut(s)	54
FaiI	YATR	8 cut(s)	52, 91, 234, 256, 258, 332, 395, 397
FalI	AAGNNNNNCTT	6 cut(s)	168, 200, 212, 244, 284, 316
FatI	CATG	1 cut(s)	50
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	1 cut(s)	108
GluI	GCNGC	1 cut(s)	386
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	1 cut(s)	54
HinfI	GANTC	2 cut(s)	137, 213
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	3 cut(s)	148, 207, 279
Hpy188III	TCNNGA	2 cut(s)	197, 301
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	5 cut(s)	170, 212, 286, 298, 348
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	50, 188, 312
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	6 cut(s)	45, 186, 257, 335, 362, 425
Lsp1109I	GCAGC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	264
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	3 cut(s)	166, 385, 427
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	5 cut(s)	75, 119, 236, 333, 390
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	1 cut(s)	236
Mph1103I	ATGCAT	1 cut(s)	52
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	54
NsiI	ATGCAT	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PsrI	GAACNNNNNNTAC	2 cut(s)	258, 290
PstNI	CAGNNNCTG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	184
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	5 cut(s)	184, 204, 267, 276, 414
Sse9I	AATT	5 cut(s)	75, 119, 236, 333, 390
SspMI	CTAG	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	267
TasI	AATT	5 cut(s)	75, 119, 236, 333, 390
TfiI	GAWTC	1 cut(s)	213
TscAI	CASTG	1 cut(s)	438
TseI	GCWGC	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	249
TspRI	CASTG	1 cut(s)	438
XspI	CTAG	1 cut(s)	108
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.