Rmu_sc0005080.1_g000013

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005080.1
Physical Location & Seq
Reverse (-)
53370 .. 54611
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005080.1_g000013.1.cds

Sequence Viewer

Length: 1242 bp
atgagtgtggctactgtgtctccgattttacatactattgataaccttgttgggtatcttaagagggaacgagggttagattctgattacggtgacctagggttgatagatcagagggcaaagaggcttaaggtagagactgatgtgggtatttcagaagaggctagatttgcttttgatgaaaaacccaggttttccagagtgagatttgggtatatacccaaggggctagtgcttggggatgatgaaattgatcgactacgcaacgaaaacactaggaatctattgttgaaccataagaaacttcatctggttcttgatctagaccacaccctgctgaataccactttccttgatgagatgtcacccgaagaagaatatctgaagacccaaacccaggctgatcattctctgcagtatgttcacgttgttgacactcccagtaggcaattgatgaccaagttgaggccttatatcaggacgtttttggtgcaagccagtcaaatgtttgagctgtccatatacacaatgggtaatcgagattatgcgctagaaatggctaagctgcttgatccaggaaatcatatctttggtggtagagtcatatcgcgtgatgatagcacagaaacaaatagaaagagtctagatgtcctgcttgcccgagattctgctgttgtgatccttgatgatacgaaaaatgtatggacaaatgacaacagggacaatgtaatagtgatgcccaggtaccatttctttagatctagttgtcaaaagtttcgcctcagtaaggttatgccttattctgagttgaagactgatgaatgtgatcgttatggaggagcttatcttgcaaatgtactacgacttcttgggtatatccacaccatattctttaatgaagttgagttacaggggtgggatcttatcgacagagatgtgaggcttgtcttgaaaatccttaagaaggaagtcttgaagggctgtaaaattgttttcagccgtgtattcccctcaaatgtcgaagctaatactcattctctgtggaagatggcggagcagctgggcgctgcttgttcaacacaagtcgatccatcagtcacacatgtagttgcagcaaatgctcgaacacagaaatcttgttgggcagttaaagaaagaaagtttttggtgaatccccaatggattcgttctgcaaatattatgtggcaaaagcaacctgaagataattttccctgtcattag

Protein Analysis

413

Amino Acids

47.69

Weight (kDa)

7.67

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000221)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58003 AT5G58003 AT5G58003
fragaria_vesca FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica MD09G1131300.v1.1
prunus_persica Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis pycom09g05350
rosa_chinensis RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 744
AccB1I GGYRCC 1 cut(s) 744
AccII CGCG 1 cut(s) 610
AciI CCGC 1 cut(s) 1052
AclWI GGATC 4 cut(s) 566, 673, 927, 1082
AcuI CTGAAG 2 cut(s) 404, 1239
AfaI GTAC 2 cut(s) 746, 858
AfiI CCNNNNNNNGG 4 cut(s) 397, 465, 787, 964
AflII CTTAAG 3 cut(s) 59, 128, 959
AflIII ACRYGT 1 cut(s) 1102
AgsI TTSAA 5 cut(s) 292, 811, 952, 976, 1077
AjnI CCWGG 4 cut(s) 188, 396, 574, 740
AluBI AGCT 5 cut(s) 514, 565, 842, 1025, 1060
AluI AGCT 5 cut(s) 514, 565, 842, 1025, 1060
Alw26I GTCTC 2 cut(s) 24, 131
AlwI GGATC 4 cut(s) 566, 673, 927, 1082
Ama87I CYCGRG 1 cut(s) 660
AoxI GGCC 1 cut(s) 467
ApeKI GCWGC 4 cut(s) 565, 1057, 1067, 1112
Asp718I GGTACC 1 cut(s) 744
AspA2I CCTAGG 1 cut(s) 97
AspLEI GCGC 2 cut(s) 550, 1067
AsuHPI GGTGA 3 cut(s) 104, 357, 1180
AvaI CYCGRG 1 cut(s) 660
AvrII CCTAGG 1 cut(s) 97
BanI GGYRCC 1 cut(s) 744
BarI GAAGNNNNNNTAC 4 cut(s) 849, 881, 891, 923
BbsI GAAGAC 2 cut(s) 392, 818
BbvI GCAGC 4 cut(s) 552, 1054, 1069, 1124
BccI CCATC 2 cut(s) 1042, 1099
BceAI ACGGC 1 cut(s) 984
BciT130I CCWGG 4 cut(s) 190, 398, 576, 742
BclI TGATCA 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 24, 131
BfaI CTAG 8 cut(s) 98, 165, 230, 276, 323, 551, 644, 762
BfmI CTRYAG 1 cut(s) 413
BfoI RGCGCY 1 cut(s) 1068
BfrI CTTAAG 3 cut(s) 59, 128, 959
BglII AGATCT 1 cut(s) 758
BisI GCNGC 4 cut(s) 566, 1058, 1068, 1113
BlnI CCTAGG 1 cut(s) 97
BlpI GCTNAGC 1 cut(s) 561
BlsI GCNGC 4 cut(s) 567, 1059, 1069, 1114
Bme1390I CCNGG 4 cut(s) 190, 398, 576, 742
BmeT110I CYCGRG 1 cut(s) 660
BmiI GGNNCC 1 cut(s) 746
BmrFI CCNGG 4 cut(s) 190, 398, 576, 742
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 726
BmuI ACTGGG 1 cut(s) 435
BpiI GAAGAC 2 cut(s) 392, 818
Bpu1102I GCTNAGC 1 cut(s) 561
BsaJI CCNNGG 5 cut(s) 97, 188, 222, 396, 740
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 4 cut(s) 397, 465, 787, 964
Bse1I ACTGG 2 cut(s) 441, 498
BseBI CCWGG 4 cut(s) 190, 398, 576, 742
BseDI CCNNGG 5 cut(s) 97, 188, 222, 396, 740
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 4 cut(s) 397, 465, 787, 964
BseMII CTCAG 2 cut(s) 795, 796
BseNI ACTGG 2 cut(s) 441, 498
BseRI GAGGAG 1 cut(s) 852
BseXI GCAGC 4 cut(s) 552, 1054, 1069, 1124
BseYI CCCAGC 1 cut(s) 1060
Bsh1236I CGCG 1 cut(s) 610
BshFI GGCC 1 cut(s) 469
BshNI GGYRCC 1 cut(s) 744
BsiHKCI CYCGRG 1 cut(s) 660
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 4 cut(s) 397, 465, 787, 964
BsmAI GTCTC 2 cut(s) 24, 131
BsmFI GGGAC 1 cut(s) 734
BsnI GGCC 1 cut(s) 469
BsoBI CYCGRG 1 cut(s) 660
Bsp1720I GCTNAGC 1 cut(s) 561
BspACI CCGC 1 cut(s) 1052
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 2 cut(s) 795, 796
BspFNI CGCG 1 cut(s) 610
BspLI GGNNCC 1 cut(s) 746
BspMAI CTGCAG 1 cut(s) 417
BspPI GGATC 4 cut(s) 566, 673, 927, 1082
BspT107I GGYRCC 1 cut(s) 744
BspTI CTTAAG 3 cut(s) 59, 128, 959
BsrI ACTGG 2 cut(s) 441, 498
BssECI CCNNGG 5 cut(s) 97, 188, 222, 396, 740
BssT1I CCWWGG 2 cut(s) 97, 222
Bst2UI CCWGG 4 cut(s) 190, 398, 576, 742
Bst4CI ACNGT 2 cut(s) 16, 92
Bst6I CTCTTC 1 cut(s) 153
BstAFI CTTAAG 3 cut(s) 59, 128, 959
BstAPI GCANNNNNTGC 1 cut(s) 1118
BstC8I GCNNGC 2 cut(s) 495, 657
BstDEI CTNAG 3 cut(s) 561, 782, 804
BstEII GGTNACC 1 cut(s) 92
BstENI CCTNNNNNAGG 2 cut(s) 785, 962
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 610
BstH2I RGCGCY 1 cut(s) 1068
BstHHI GCGC 2 cut(s) 550, 1067
BstMAI GTCTC 2 cut(s) 24, 131
BstMWI GCNNNNNNNGC 3 cut(s) 170, 848, 1118
BstNI CCWGG 4 cut(s) 190, 398, 576, 742
BstNSI RCATGY 1 cut(s) 1106
BstPI GGTNACC 1 cut(s) 92
BstSCI CCNGG 4 cut(s) 188, 396, 574, 740
BstSFI CTRYAG 1 cut(s) 413
BstUI CGCG 1 cut(s) 610
BstV1I GCAGC 4 cut(s) 552, 1054, 1069, 1124
BstV2I GAAGAC 2 cut(s) 392, 818
BstX2I RGATCY 2 cut(s) 758, 919
BstYI RGATCY 2 cut(s) 758, 919
BsuRI GGCC 1 cut(s) 469
BtsCI GGATG 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 495, 657
CfoI GCGC 2 cut(s) 550, 1067
Csp6I GTAC 2 cut(s) 745, 857
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 1 cut(s) 1103
CviQI GTAC 2 cut(s) 745, 857
DdeI CTNAG 3 cut(s) 561, 782, 804
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 1067
Eco130I CCWWGG 2 cut(s) 97, 222
Eco147I AGGCCT 1 cut(s) 469
Eco57I CTGAAG 2 cut(s) 404, 1239
Eco88I CYCGRG 1 cut(s) 660
Eco91I GGTNACC 1 cut(s) 92
EcoNI CCTNNNNNAGG 2 cut(s) 785, 962
EcoO65I GGTNACC 1 cut(s) 92
EcoRII CCWGG 4 cut(s) 188, 396, 574, 740
EcoT14I CCWWGG 2 cut(s) 97, 222
ErhI CCWWGG 2 cut(s) 97, 222
FaeI CATG 1 cut(s) 1106
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FaqI GGGAC 1 cut(s) 734
FatI CATG 1 cut(s) 1102
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 4 cut(s) 566, 1058, 1068, 1113
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 4 cut(s) 566, 1058, 1068, 1113
FspBI CTAG 8 cut(s) 98, 165, 230, 276, 323, 551, 644, 762
GlaI GCGC 2 cut(s) 549, 1066
GluI GCNGC 4 cut(s) 566, 1058, 1068, 1113
GsaI CCCAGC 1 cut(s) 1064
HaeII RGCGCY 1 cut(s) 1068
HaeIII GGCC 1 cut(s) 469
HhaI GCGC 2 cut(s) 550, 1067
Hin1II CATG 1 cut(s) 1106
Hin6I GCGC 2 cut(s) 548, 1065
HinP1I GCGC 2 cut(s) 548, 1065
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 7 cut(s) 80, 280, 600, 640, 665, 1171, 1183
HphI GGTGA 3 cut(s) 104, 357, 1180
Hpy166II GTNNAC 2 cut(s) 424, 433
Hpy188I TCNGA 6 cut(s) 24, 85, 114, 157, 384, 805
Hpy188III TCNNGA 8 cut(s) 198, 317, 323, 478, 539, 644, 949, 973
Hpy8I GTNNAC 2 cut(s) 424, 433
HpyAV CCTTC 2 cut(s) 958, 970
HpyCH4III ACNGT 2 cut(s) 16, 92
HpyCH4IV ACGT 2 cut(s) 426, 482
HpyCH4V TGCA 5 cut(s) 415, 493, 851, 1112, 1193
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 848, 1118
HpyF3I CTNAG 3 cut(s) 561, 782, 804
HpySE526I ACGT 2 cut(s) 426, 482
Hsp92II CATG 1 cut(s) 1106
HspAI GCGC 2 cut(s) 548, 1065
KpnI GGTACC 1 cut(s) 748
Ksp22I TGATCA 1 cut(s) 403
LmnI GCTCC 2 cut(s) 839, 1054
Lsp1109I GCAGC 4 cut(s) 552, 1054, 1069, 1124
LweI GCATC 1 cut(s) 726
MaeI CTAG 8 cut(s) 98, 165, 230, 276, 323, 551, 644, 762
MaeII ACGT 2 cut(s) 426, 482
MaeIII GTNAC 4 cut(s) 92, 363, 906, 1096
MboII GAAGA 7 cut(s) 170, 383, 386, 397, 823, 1057, 1232
MfeI CAATTG 1 cut(s) 449
MflI RGATCY 2 cut(s) 758, 919
MluCI AATT 4 cut(s) 249, 449, 987, 1225
MlyI GAGTC 2 cut(s) 609, 649
MseI TTAA 5 cut(s) 60, 129, 894, 960, 1149
MspA1I CMGCKG 1 cut(s) 1060
MspCI CTTAAG 3 cut(s) 59, 128, 959
MspR9I CCNGG 4 cut(s) 190, 398, 576, 742
MunI CAATTG 1 cut(s) 449
MvaI CCWGG 4 cut(s) 190, 398, 576, 742
MvnI CGCG 1 cut(s) 610
MwoI GCNNNNNNNGC 3 cut(s) 170, 848, 1118
NlaIII CATG 1 cut(s) 1106
NlaIV GGNNCC 1 cut(s) 746
NmuCI GTSAC 3 cut(s) 92, 363, 1096
NspI RCATGY 1 cut(s) 1106
PceI AGGCCT 1 cut(s) 469
PciI ACATGT 1 cut(s) 1102
PfeI GAWTC 5 cut(s) 80, 280, 665, 1171, 1183
PfoI TCCNGGA 1 cut(s) 574
PkrI GCNGC 4 cut(s) 567, 1059, 1069, 1114
PleI GAGTC 2 cut(s) 608, 648
PpsI GAGTC 2 cut(s) 608, 648
PscI ACATGT 1 cut(s) 1102
Psp6I CCWGG 4 cut(s) 188, 396, 574, 740
PspEI GGTNACC 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 1060
PspGI CCWGG 4 cut(s) 188, 396, 574, 740
PspN4I GGNNCC 1 cut(s) 746
PstI CTGCAG 1 cut(s) 417
PsuI RGATCY 2 cut(s) 758, 919
PvuII CAGCTG 1 cut(s) 1060
RsaI GTAC 2 cut(s) 746, 858
RsaNI GTAC 2 cut(s) 745, 857
SaqAI TTAA 5 cut(s) 60, 129, 894, 960, 1149
SatI GCNGC 4 cut(s) 566, 1058, 1068, 1113
SchI GAGTC 2 cut(s) 609, 649
ScrFI CCNGG 4 cut(s) 190, 398, 576, 742
SfaNI GCATC 1 cut(s) 726
SfcI CTRYAG 1 cut(s) 413
SmlI CTYRAG 3 cut(s) 59, 128, 959
SmoI CTYRAG 3 cut(s) 59, 128, 959
Sse9I AATT 4 cut(s) 249, 449, 987, 1225
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 1 cut(s) 1052
SspI AATATT 1 cut(s) 1198
SspMI CTAG 8 cut(s) 98, 165, 230, 276, 323, 551, 644, 762
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 4 cut(s) 188, 396, 574, 740
StyI CCWWGG 2 cut(s) 97, 222
TaaI ACNGT 2 cut(s) 16, 92
TaiI ACGT 2 cut(s) 429, 485
TaqI TCGA 6 cut(s) 256, 538, 927, 1020, 1086, 1123
TasI AATT 4 cut(s) 249, 449, 987, 1225
TatI WGTACW 1 cut(s) 856
TfiI GAWTC 5 cut(s) 80, 280, 665, 1171, 1183
Tru1I TTAA 5 cut(s) 60, 129, 894, 960, 1149
Tru9I TTAA 5 cut(s) 60, 129, 894, 960, 1149
TseFI GTSAC 3 cut(s) 92, 363, 1096
TseI GCWGC 4 cut(s) 565, 1057, 1067, 1112
Tsp45I GTSAC 3 cut(s) 92, 363, 1096
TspDTI ATGAA 5 cut(s) 195, 261, 296, 834, 912
Vha464I CTTAAG 3 cut(s) 59, 128, 959
XagI CCTNNNNNAGG 2 cut(s) 785, 962
XbaI TCTAGA 2 cut(s) 322, 643
XceI RCATGY 1 cut(s) 1106
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmaJI CCTAGG 1 cut(s) 97
XspI CTAG 8 cut(s) 98, 165, 230, 276, 323, 551, 644, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.