RNA polymerase II C-terminal domain phosphatase-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 971 |
| AclWI | GGATC | 4 cut(s) | 566, 673, 846, 1001 |
| AcoI | YGGCCR | 1 cut(s) | 558 |
| AcsI | RAATTY | 4 cut(s) | 150, 280, 872, 1114 |
| AcuI | CTGAAG | 3 cut(s) | 219, 899, 1158 |
| AdeI | CACNNNGTG | 1 cut(s) | 430 |
| AfaI | GTAC | 1 cut(s) | 777 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 444, 465, 883 |
| AflII | CTTAAG | 2 cut(s) | 128, 383 |
| AflIII | ACRYGT | 1 cut(s) | 1021 |
| AgsI | TTSAA | 4 cut(s) | 292, 782, 895, 996 |
| AjiI | CACGTC | 1 cut(s) | 865 |
| AjnI | CCWGG | 1 cut(s) | 574 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 192, 224 |
| AleI | CACNNNNGTG | 1 cut(s) | 1022 |
| AluBI | AGCT | 2 cut(s) | 761, 979 |
| AluI | AGCT | 2 cut(s) | 761, 979 |
| Alw26I | GTCTC | 2 cut(s) | 22, 131 |
| AlwI | GGATC | 4 cut(s) | 566, 673, 846, 1001 |
| Ama87I | CYCGRG | 1 cut(s) | 660 |
| AoxI | GGCC | 3 cut(s) | 117, 467, 558 |
| ApeKI | GCWGC | 2 cut(s) | 976, 1031 |
| ApoI | RAATTY | 4 cut(s) | 150, 280, 872, 1114 |
| AspA2I | CCTAGG | 1 cut(s) | 97 |
| AspLEI | GCGC | 2 cut(s) | 550, 986 |
| AspS9I | GGNCC | 1 cut(s) | 117 |
| AsuHPI | GGTGA | 2 cut(s) | 357, 1099 |
| AvaI | CYCGRG | 1 cut(s) | 660 |
| AvrII | CCTAGG | 1 cut(s) | 97 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 818, 851 |
| BalI | TGGCCA | 1 cut(s) | 560 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 768, 800, 810, 842 |
| BbvI | GCAGC | 2 cut(s) | 988, 1043 |
| BccI | CCATC | 3 cut(s) | 523, 961, 1018 |
| BciT130I | CCWGG | 1 cut(s) | 576 |
| BclI | TGATCA | 2 cut(s) | 355, 403 |
| BcoDI | GTCTC | 2 cut(s) | 22, 131 |
| BfaI | CTAG | 6 cut(s) | 98, 107, 276, 323, 551, 644 |
| BfoI | RGCGCY | 1 cut(s) | 987 |
| BfrI | CTTAAG | 2 cut(s) | 128, 383 |
| BisI | GCNGC | 2 cut(s) | 977, 1032 |
| BlnI | CCTAGG | 1 cut(s) | 97 |
| BlsI | GCNGC | 2 cut(s) | 978, 1033 |
| Bme1390I | CCNGG | 1 cut(s) | 576 |
| BmeT110I | CYCGRG | 1 cut(s) | 660 |
| BmgBI | CACGTC | 1 cut(s) | 865 |
| BmgT120I | GGNCC | 1 cut(s) | 117 |
| BmrFI | CCNGG | 1 cut(s) | 576 |
| BmrI | ACTGGG | 2 cut(s) | 391, 435 |
| BmuI | ACTGGG | 2 cut(s) | 391, 435 |
| Bpu10I | CCTNAGC | 1 cut(s) | 236 |
| BpuEI | CTTGAG | 1 cut(s) | 44 |
| Bsa29I | ATCGAT | 1 cut(s) | 256 |
| BsaBI | GATNNNNATC | 1 cut(s) | 951 |
| BsaJI | CCNNGG | 2 cut(s) | 97, 222 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 34 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 444, 465, 883 |
| Bse1I | ACTGG | 3 cut(s) | 397, 441, 498 |
| Bse3DI | GCAATG | 1 cut(s) | 271 |
| Bse8I | GATNNNNATC | 1 cut(s) | 951 |
| BseBI | CCWGG | 1 cut(s) | 576 |
| BseCI | ATCGAT | 1 cut(s) | 256 |
| BseDI | CCNNGG | 2 cut(s) | 97, 222 |
| BseGI | GGATG | 2 cut(s) | 247, 952 |
| BseJI | GATNNNNATC | 1 cut(s) | 951 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 444, 465, 883 |
| BseMI | GCAATG | 1 cut(s) | 271 |
| BseNI | ACTGG | 3 cut(s) | 397, 441, 498 |
| BseRI | GAGGAG | 1 cut(s) | 771 |
| BseXI | GCAGC | 2 cut(s) | 988, 1043 |
| BseYI | CCCAGC | 1 cut(s) | 979 |
| BshFI | GGCC | 3 cut(s) | 119, 469, 560 |
| BshVI | ATCGAT | 1 cut(s) | 256 |
| BsiHKCI | CYCGRG | 1 cut(s) | 660 |
| BslFI | GGGAC | 3 cut(s) | 81, 592, 734 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 444, 465, 883 |
| BsmAI | GTCTC | 2 cut(s) | 22, 131 |
| BsmBI | CGTCTC | 1 cut(s) | 22 |
| BsmFI | GGGAC | 3 cut(s) | 81, 592, 734 |
| BsnI | GGCC | 3 cut(s) | 119, 469, 560 |
| BsoBI | CYCGRG | 1 cut(s) | 660 |
| BspACI | CCGC | 1 cut(s) | 971 |
| BspANI | GGCC | 3 cut(s) | 119, 469, 560 |
| BspDI | ATCGAT | 1 cut(s) | 256 |
| BspPI | GGATC | 4 cut(s) | 566, 673, 846, 1001 |
| BspTI | CTTAAG | 2 cut(s) | 128, 383 |
| BsrDI | GCAATG | 1 cut(s) | 271 |
| BsrI | ACTGG | 3 cut(s) | 397, 441, 498 |
| BssECI | CCNNGG | 2 cut(s) | 97, 222 |
| BssT1I | CCWWGG | 2 cut(s) | 97, 222 |
| Bst2UI | CCWGG | 1 cut(s) | 576 |
| Bst4CI | ACNGT | 3 cut(s) | 16, 92, 902 |
| BstAFI | CTTAAG | 2 cut(s) | 128, 383 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 170, 1037 |
| BstC8I | GCNNGC | 2 cut(s) | 495, 657 |
| BstDEI | CTNAG | 1 cut(s) | 236 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 881 |
| BstF5I | GGATG | 2 cut(s) | 247, 952 |
| BstH2I | RGCGCY | 1 cut(s) | 987 |
| BstHHI | GCGC | 2 cut(s) | 550, 986 |
| BstMAI | GTCTC | 2 cut(s) | 22, 131 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 170, 767, 1037 |
| BstNI | CCWGG | 1 cut(s) | 576 |
| BstNSI | RCATGY | 1 cut(s) | 1025 |
| BstSCI | CCNGG | 1 cut(s) | 574 |
| BstV1I | GCAGC | 2 cut(s) | 988, 1043 |
| BstX2I | RGATCY | 1 cut(s) | 838 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 229 |
| BstYI | RGATCY | 1 cut(s) | 838 |
| Bsu15I | ATCGAT | 1 cut(s) | 256 |
| BsuRI | GGCC | 3 cut(s) | 119, 469, 560 |
| BsuTUI | ATCGAT | 1 cut(s) | 256 |
| BtrI | CACGTC | 1 cut(s) | 865 |
| BtsCI | GGATG | 2 cut(s) | 247, 952 |
| BtsIMutI | CAGTG | 1 cut(s) | 97 |
| Cac8I | GCNNGC | 2 cut(s) | 495, 657 |
| CfoI | GCGC | 2 cut(s) | 550, 986 |
| Cfr13I | GGNCC | 1 cut(s) | 117 |
| ClaI | ATCGAT | 1 cut(s) | 256 |
| Csp6I | GTAC | 1 cut(s) | 776 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 334, 369 |
| CviAII | CATG | 4 cut(s) | 190, 604, 920, 1022 |
| CviQI | GTAC | 1 cut(s) | 776 |
| DdeI | CTNAG | 1 cut(s) | 236 |
| DraIII | CACNNNGTG | 1 cut(s) | 430 |
| EaeI | YGGCCR | 1 cut(s) | 558 |
| EciI | GGCGGA | 1 cut(s) | 986 |
| Eco130I | CCWWGG | 2 cut(s) | 97, 222 |
| Eco147I | AGGCCT | 1 cut(s) | 469 |
| Eco57I | CTGAAG | 3 cut(s) | 219, 899, 1158 |
| Eco88I | CYCGRG | 1 cut(s) | 660 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 881 |
| EcoRII | CCWGG | 1 cut(s) | 574 |
| EcoT14I | CCWWGG | 2 cut(s) | 97, 222 |
| ErhI | CCWWGG | 2 cut(s) | 97, 222 |
| Esp3I | CGTCTC | 1 cut(s) | 22 |
| FaeI | CATG | 4 cut(s) | 193, 607, 923, 1025 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 157, 189, 366, 398, 875, 907 |
| FaqI | GGGAC | 3 cut(s) | 81, 592, 734 |
| FatI | CATG | 4 cut(s) | 189, 603, 919, 1021 |
| FbaI | TGATCA | 2 cut(s) | 355, 403 |
| Fnu4HI | GCNGC | 2 cut(s) | 977, 1032 |
| FokI | GGATG | 2 cut(s) | 254, 939 |
| Fsp4HI | GCNGC | 2 cut(s) | 977, 1032 |
| FspBI | CTAG | 6 cut(s) | 98, 107, 276, 323, 551, 644 |
| GlaI | GCGC | 2 cut(s) | 549, 985 |
| GluI | GCNGC | 2 cut(s) | 977, 1032 |
| GsaI | CCCAGC | 1 cut(s) | 983 |
| HaeII | RGCGCY | 1 cut(s) | 987 |
| HaeIII | GGCC | 3 cut(s) | 119, 469, 560 |
| HhaI | GCGC | 2 cut(s) | 550, 986 |
| Hin1II | CATG | 4 cut(s) | 193, 607, 923, 1025 |
| Hin6I | GCGC | 2 cut(s) | 548, 984 |
| HinP1I | GCGC | 2 cut(s) | 548, 984 |
| HinfI | GANTC | 6 cut(s) | 80, 600, 640, 665, 1090, 1102 |
| HphI | GGTGA | 2 cut(s) | 357, 1099 |
| Hpy166II | GTNNAC | 2 cut(s) | 424, 433 |
| Hpy188I | TCNGA | 4 cut(s) | 24, 85, 360, 403 |
| Hpy188III | TCNNGA | 8 cut(s) | 61, 317, 323, 539, 644, 868, 877, 892 |
| Hpy8I | GTNNAC | 2 cut(s) | 424, 433 |
| Hpy99I | CGWCG | 1 cut(s) | 374 |
| HpyAV | CCTTC | 3 cut(s) | 877, 889, 1067 |
| HpyCH4III | ACNGT | 3 cut(s) | 16, 92, 902 |
| HpyCH4IV | ACGT | 2 cut(s) | 482, 864 |
| HpyCH4V | TGCA | 5 cut(s) | 415, 493, 770, 1031, 1112 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 170, 767, 1037 |
| HpyF3I | CTNAG | 1 cut(s) | 236 |
| HpySE526I | ACGT | 2 cut(s) | 482, 864 |
| Hsp92II | CATG | 4 cut(s) | 193, 607, 923, 1025 |
| HspAI | GCGC | 2 cut(s) | 548, 984 |
| Ksp22I | TGATCA | 2 cut(s) | 355, 403 |
| LmnI | GCTCC | 2 cut(s) | 758, 973 |
| Lsp1109I | GCAGC | 2 cut(s) | 988, 1043 |
| MaeI | CTAG | 6 cut(s) | 98, 107, 276, 323, 551, 644 |
| MaeII | ACGT | 2 cut(s) | 482, 864 |
| MaeIII | GTNAC | 3 cut(s) | 92, 363, 1015 |
| MboII | GAAGA | 4 cut(s) | 386, 892, 976, 1151 |
| MflI | RGATCY | 1 cut(s) | 838 |
| MlsI | TGGCCA | 1 cut(s) | 560 |
| MluCI | AATT | 7 cut(s) | 150, 249, 280, 872, 906, 1114, 1144 |
| MluNI | TGGCCA | 1 cut(s) | 560 |
| MlyI | GAGTC | 2 cut(s) | 609, 649 |
| MmeI | TCCRAC | 1 cut(s) | 57 |
| MnlI | CCTC | 9 cut(s) | 57, 65, 154, 459, 749, 852, 934, 940, 1104 |
| Mox20I | TGGCCA | 1 cut(s) | 560 |
| MscI | TGGCCA | 1 cut(s) | 560 |
| MseI | TTAA | 4 cut(s) | 129, 384, 813, 1068 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1022 |
| Msp20I | TGGCCA | 1 cut(s) | 560 |
| MspA1I | CMGCKG | 1 cut(s) | 979 |
| MspCI | CTTAAG | 2 cut(s) | 128, 383 |
| MspR9I | CCNGG | 1 cut(s) | 576 |
| MvaI | CCWGG | 1 cut(s) | 576 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 170, 767, 1037 |
| NlaIII | CATG | 4 cut(s) | 193, 607, 923, 1025 |
| NmuCI | GTSAC | 3 cut(s) | 92, 363, 1015 |
| NspI | RCATGY | 1 cut(s) | 1025 |
| OliI | CACNNNNGTG | 1 cut(s) | 1022 |
| PceI | AGGCCT | 1 cut(s) | 469 |
| PciI | ACATGT | 1 cut(s) | 1021 |
| PfeI | GAWTC | 4 cut(s) | 80, 665, 1090, 1102 |
| PfoI | TCCNGGA | 1 cut(s) | 574 |
| PkrI | GCNGC | 2 cut(s) | 978, 1033 |
| PleI | GAGTC | 2 cut(s) | 608, 648 |
| PpsI | GAGTC | 2 cut(s) | 608, 648 |
| PscI | ACATGT | 1 cut(s) | 1021 |
| Psp6I | CCWGG | 1 cut(s) | 574 |
| PspFI | CCCAGC | 1 cut(s) | 979 |
| PspGI | CCWGG | 1 cut(s) | 574 |
| PspPI | GGNCC | 1 cut(s) | 117 |
| PsuI | RGATCY | 1 cut(s) | 838 |
| PvuII | CAGCTG | 1 cut(s) | 979 |
| RsaI | GTAC | 1 cut(s) | 777 |
| RsaNI | GTAC | 1 cut(s) | 776 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1022 |
| SaqAI | TTAA | 4 cut(s) | 129, 384, 813, 1068 |
| SatI | GCNGC | 2 cut(s) | 977, 1032 |
| Sau96I | GGNCC | 1 cut(s) | 117 |
| SchI | GAGTC | 2 cut(s) | 609, 649 |
| ScrFI | CCNGG | 1 cut(s) | 576 |
| SetI | ASST | 8 cut(s) | 48, 99, 135, 485, 763, 867, 981, 1138 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1022 |
| SmlI | CTYRAG | 3 cut(s) | 59, 128, 383 |
| SmoI | CTYRAG | 3 cut(s) | 59, 128, 383 |
| Sse9I | AATT | 7 cut(s) | 150, 249, 280, 872, 906, 1114, 1144 |
| SseBI | AGGCCT | 1 cut(s) | 469 |
| SsiI | CCGC | 1 cut(s) | 971 |
| SspI | AATATT | 1 cut(s) | 37 |
| SspMI | CTAG | 6 cut(s) | 98, 107, 276, 323, 551, 644 |
| StuI | AGGCCT | 1 cut(s) | 469 |
| StyD4I | CCNGG | 1 cut(s) | 574 |
| StyI | CCWWGG | 2 cut(s) | 97, 222 |
| TaaI | ACNGT | 3 cut(s) | 16, 92, 902 |
| TaiI | ACGT | 2 cut(s) | 485, 867 |
| TaqI | TCGA | 5 cut(s) | 256, 538, 939, 1005, 1042 |
| TasI | AATT | 7 cut(s) | 150, 249, 280, 872, 906, 1114, 1144 |
| TatI | WGTACW | 1 cut(s) | 775 |
| TfiI | GAWTC | 4 cut(s) | 80, 665, 1090, 1102 |
| Tru1I | TTAA | 4 cut(s) | 129, 384, 813, 1068 |
| Tru9I | TTAA | 4 cut(s) | 129, 384, 813, 1068 |
| TscAI | CASTG | 1 cut(s) | 97 |
| TseFI | GTSAC | 3 cut(s) | 92, 363, 1015 |
| TseI | GCWGC | 2 cut(s) | 976, 1031 |
| Tsp45I | GTSAC | 3 cut(s) | 92, 363, 1015 |
| TspDTI | ATGAA | 6 cut(s) | 195, 282, 296, 753, 831, 1094 |
| TspRI | CASTG | 1 cut(s) | 97 |
| Vha464I | CTTAAG | 2 cut(s) | 128, 383 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 881 |
| XapI | RAATTY | 4 cut(s) | 150, 280, 872, 1114 |
| XbaI | TCTAGA | 2 cut(s) | 322, 643 |
| XceI | RCATGY | 1 cut(s) | 1025 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 526 |
| XmaJI | CCTAGG | 1 cut(s) | 97 |
| XspI | CTAG | 6 cut(s) | 98, 107, 276, 323, 551, 644 |