Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

76506726 .. 76507962

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0571900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTATAACGACGTAAGACCGGGAGGTCCTAGCATCCGCTTTTACCCACTAACAGATCTAGAAGAGTTCCTGACTGTTTGTCGCTTGGCTCGTGAGAAAAAGGAAAAAGAAGCAAAGGCAGCTGTAAAAGAACCACCAGTGGCTGCTGTAGGCGAGCGTTGTGAAATCTGTGGTGACGGTCACAGTACCGTAACATGCTCATATGATGACATTGGCCTAGATTCAGACGTAGGTAGTGATGAGGAGATACCAGAGGGATATACAAGGGCATCATTGCACTACAGTACCAAGGCGAATGGTGAACGCATTCAAGGACCTGCTGTTCGTGTTGTTCCCATGGTTTGTTTTCGTTGTTATAAGTTTGGTGACCACCGGCCCGAAAATTGCCCGGGAAAGGTGAGCGTGGATGATCGGACCCCAAGGTCTCAAGAATCTCGTACCTCAGAGTCAGAGGGTGGCGCTGCTGTTACTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

158

Amino Acids

17.26

Weight (kDa)

5.16

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
AasI	GACNNNNNNGTC	2 cut(s)	24, 421
Acc36I	ACCTGC	1 cut(s)	325
AciI	CCGC	1 cut(s)	37
AfaI	GTAC	3 cut(s)	187, 286, 439
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	1 cut(s)	311
AhdI	GACNNNNNGTC	1 cut(s)	78
AloI	GAACNNNNNNTCC	2 cut(s)	306, 338
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	429
AlwNI	CAGNNNCTG	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	388
AoxI	GGCC	2 cut(s)	214, 374
ApeKI	GCWGC	3 cut(s)	119, 143, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
Asp700I	GAANNNNTTC	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	4 cut(s)	26, 314, 375, 414
AsuC2I	CCSGG	3 cut(s)	21, 389, 390
AsuHPI	GGTGA	4 cut(s)	185, 311, 377, 409
AvaI	CYCGRG	1 cut(s)	388
AvaII	GGWCC	3 cut(s)	26, 314, 414
BaeI	ACNNNNGTAYC	2 cut(s)	268, 301
BauI	CACGAG	1 cut(s)	90
BbvI	GCAGC	3 cut(s)	130, 131, 448
BcnI	CCSGG	3 cut(s)	21, 389, 390
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	4 cut(s)	30, 59, 218, 475
BfmI	CTRYAG	2 cut(s)	147, 280
BfoI	RGCGCY	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	325
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	3 cut(s)	120, 144, 462
BlsI	GCNGC	3 cut(s)	121, 145, 463
Bme1390I	CCNGG	3 cut(s)	21, 389, 390
Bme18I	GGWCC	3 cut(s)	26, 314, 414
BmeRI	GACNNNNNGTC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	388
BmgT120I	GGNCC	4 cut(s)	26, 314, 375, 414
BmiI	GGNNCC	1 cut(s)	416
BmrFI	CCNGG	3 cut(s)	21, 389, 390
BmsI	GCATC	2 cut(s)	42, 278
BpuEI	CTTGAG	1 cut(s)	411
BpuMI	CCSGG	3 cut(s)	21, 389, 390
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	4 cut(s)	288, 336, 388, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	2 cut(s)	137, 475
Bse3DI	GCAATG	1 cut(s)	272
BseDI	CCNNGG	4 cut(s)	288, 336, 388, 419
BseGI	GGATG	2 cut(s)	33, 412
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	2 cut(s)	137, 475
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	3 cut(s)	130, 131, 448
BshFI	GGCC	2 cut(s)	216, 376
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	3 cut(s)	20, 373, 389
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	216, 376
Bso31I	GGTCTC	1 cut(s)	429
BsoBI	CYCGRG	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	55, 409
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	2 cut(s)	216, 376
BspCNI	CTCAG	1 cut(s)	455
BspLI	GGNNCC	1 cut(s)	416
BspMI	ACCTGC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	137, 475
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	4 cut(s)	288, 336, 388, 419
BssMI	GATC	2 cut(s)	55, 409
BssSI	CACGAG	1 cut(s)	90
BssT1I	CCWWGG	3 cut(s)	288, 336, 419
Bst2BI	CACGAG	1 cut(s)	90
Bst4CI	ACNGT	5 cut(s)	76, 179, 185, 190, 284
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	442
BstDSI	CCRYGG	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	33, 412
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	2 cut(s)	58, 412
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	2 cut(s)	55, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	198
BstPI	GGTNACC	1 cut(s)	365
BstSCI	CCNGG	3 cut(s)	19, 387, 388
BstSFI	CTRYAG	2 cut(s)	147, 280
BstV1I	GCAGC	3 cut(s)	130, 131, 448
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	216, 376
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	33, 412
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	155
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	1 cut(s)	461
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	4 cut(s)	26, 314, 375, 414
Cfr9I	CCCGGG	1 cut(s)	388
Csp6I	GTAC	3 cut(s)	186, 285, 438
CviAII	CATG	2 cut(s)	195, 337
CviJI	RGCY	6 cut(s)	89, 122, 143, 216, 376, 474
CviKI_1	RGCY	6 cut(s)	89, 122, 143, 216, 376, 474
CviQI	GTAC	3 cut(s)	186, 285, 438
DdeI	CTNAG	1 cut(s)	442
DpnI	GATC	2 cut(s)	57, 411
DpnII	GATC	2 cut(s)	55, 409
DrdI	GACNNNNNNGTC	2 cut(s)	24, 421
DriI	GACNNNNNGTC	1 cut(s)	78
DseDI	GACNNNNNNGTC	2 cut(s)	24, 421
Eam1104I	CTCTTC	1 cut(s)	57
Eam1105I	GACNNNNNGTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	57
Eco130I	CCWWGG	3 cut(s)	288, 336, 419
Eco31I	GGTCTC	1 cut(s)	429
Eco47I	GGWCC	3 cut(s)	26, 314, 414
Eco88I	CYCGRG	1 cut(s)	388
Eco91I	GGTNACC	1 cut(s)	365
EcoO109I	RGGNCCY	2 cut(s)	26, 314
EcoO65I	GGTNACC	1 cut(s)	365
EcoT14I	CCWWGG	3 cut(s)	288, 336, 419
ErhI	CCWWGG	3 cut(s)	288, 336, 419
FaeI	CATG	2 cut(s)	198, 340
FaiI	YATR	7 cut(s)	6, 196, 202, 204, 261, 338, 357
FatI	CATG	2 cut(s)	194, 336
FauNDI	CATATG	1 cut(s)	202
Fnu4HI	GCNGC	3 cut(s)	120, 144, 462
FokI	GGATG	2 cut(s)	20, 419
Fsp4HI	GCNGC	3 cut(s)	120, 144, 462
FspBI	CTAG	4 cut(s)	30, 59, 218, 475
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	3 cut(s)	120, 144, 462
HaeII	RGCGCY	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	216, 376
HapII	CCGG	3 cut(s)	20, 373, 389
HhaI	GCGC	1 cut(s)	461
Hin1II	CATG	2 cut(s)	198, 340
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HinfI	GANTC	3 cut(s)	221, 431, 446
HpaII	CCGG	3 cut(s)	20, 373, 389
HphI	GGTGA	4 cut(s)	185, 311, 377, 409
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	4 cut(s)	226, 414, 445, 451
Hpy188III	TCNNGA	4 cut(s)	59, 70, 92, 428
Hpy8I	GTNNAC	1 cut(s)	302
Hpy99I	CGWCG	1 cut(s)	14
HpyCH4III	ACNGT	5 cut(s)	76, 179, 185, 190, 284
HpyCH4IV	ACGT	2 cut(s)	12, 228
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	442
HpySE526I	ACGT	2 cut(s)	12, 228
Hsp92II	CATG	2 cut(s)	198, 340
HspAI	GCGC	1 cut(s)	459
Kzo9I	GATC	2 cut(s)	55, 409
LpnPI	CCDG	8 cut(s)	33, 83, 150, 264, 330, 386, 402, 456
Lsp1109I	GCAGC	3 cut(s)	130, 131, 448
LweI	GCATC	2 cut(s)	42, 278
MaeI	CTAG	4 cut(s)	30, 59, 218, 475
MaeII	ACGT	2 cut(s)	12, 228
MaeIII	GTNAC	5 cut(s)	173, 179, 190, 365, 466
MalI	GATC	2 cut(s)	57, 411
MboI	GATC	2 cut(s)	55, 409
MboII	GAAGA	1 cut(s)	74
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	1 cut(s)	382
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	5 cut(s)	17, 235, 247, 445, 451
MroXI	GAANNNNTTC	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	3 cut(s)	20, 373, 389
MspR9I	CCNGG	3 cut(s)	21, 389, 390
Mva1269I	GAATGC	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	3 cut(s)	21, 389, 390
NcoI	CCATGG	1 cut(s)	336
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	2 cut(s)	55, 409
NlaIII	CATG	2 cut(s)	198, 340
NlaIV	GGNNCC	1 cut(s)	416
NmuCI	GTSAC	3 cut(s)	173, 179, 365
NspI	RCATGY	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	88
PctI	GAATGC	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	221, 431
PkrI	GCNGC	3 cut(s)	121, 145, 463
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PpuMI	RGGWCCY	2 cut(s)	26, 314
PsiI	TTATAA	1 cut(s)	357
Psp5II	RGGWCCY	2 cut(s)	26, 314
PspEI	GGTNACC	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	416
PspPI	GGNCC	4 cut(s)	26, 314, 375, 414
PspPPI	RGGWCCY	2 cut(s)	26, 314
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	3 cut(s)	187, 286, 439
RsaNI	GTAC	3 cut(s)	186, 285, 438
SatI	GCNGC	3 cut(s)	120, 144, 462
Sau3AI	GATC	2 cut(s)	55, 409
Sau96I	GGNCC	4 cut(s)	26, 314, 375, 414
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	3 cut(s)	21, 389, 390
SetI	ASST	9 cut(s)	15, 28, 124, 231, 235, 319, 399, 425, 443
SfaNI	GCATC	2 cut(s)	42, 278
SfcI	CTRYAG	2 cut(s)	147, 280
SinI	GGWCC	3 cut(s)	26, 314, 414
SmaI	CCCGGG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	4 cut(s)	30, 59, 218, 475
StyD4I	CCNGG	3 cut(s)	19, 387, 388
StyI	CCWWGG	3 cut(s)	288, 336, 419
TaaI	ACNGT	5 cut(s)	76, 179, 185, 190, 284
TaiI	ACGT	2 cut(s)	15, 231
TasI	AATT	1 cut(s)	382
TfiI	GAWTC	2 cut(s)	221, 431
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	3 cut(s)	173, 179, 365
TseI	GCWGC	3 cut(s)	119, 143, 461
Tsp45I	GTSAC	3 cut(s)	173, 179, 365
TspMI	CCCGGG	1 cut(s)	388
TspRI	CASTG	1 cut(s)	144
VpaK11BI	GGWCC	3 cut(s)	26, 314, 414
XbaI	TCTAGA	1 cut(s)	58
XceI	RCATGY	1 cut(s)	198
XmaI	CCCGGG	1 cut(s)	388
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	4 cut(s)	30, 59, 218, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.