Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Reverse (-)

91444299 .. 91448996

Gene Structure 4698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGTCTTGCCGAGTCTCCGGTACACTCTTCTAGCAGTGATGGCTTTGCTGGGTTGCTTGAGAGAGAACTAGAGTCTGGTTCTTCAGAGTCGTCACCGGATGAAGGAGATAAAGCAGCTGATGGCGATGGCAGTGATGTTGAAAGTGAGAGCAGGATGAAAAGGCGTAAGGTAGAGAATCTGGAAAGCTTAGAGGAAACCATTGCGTCAACTTCGCAAGGACTCTCAGAAGAAAAGTCAGAAGCAACTGCAATAGAGGATATGTGTGCACATCCTGGTTCATTTGGAGATATGTGTTTTCTTTGTGGCCAGAGGTTGATTGAGCAGTCTGGTGTGACATTTGGGTACATACACAAGGGATTAAGACTTAATAATGATGAAATCGACCGGTTACGCAACACTGACATTAAGAAATCGCTAAATAATAAGAAACTTTATTTGGTACTTGATCTTGATCATACACTGCTAAATTCCACCCAGCTGAATCATATGACGGCAGAGGAAGAATATTTGATGAGCCCACCAGATTCTCTGCCAGATGTTTTGAAAGGCAGCCTTTTCAGACTAGACTTTATGCGCATGATGACCAAGTTAAGGCCCTTCATTAAGACATTTTTGAAGGAAGCCAGTGAAATATTTGAAATGTATGTGTATACAATGGGTGACCGAGCCTATGCATTGGAAATGGCCAAGTTGCTTGATCCCAAAAAGAGTACTTTGGTGATAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

243

Amino Acids

27.2

Weight (kDa)

4.79

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	146 - 238	2e-14	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	578
AccI	GTMKAC	1 cut(s)	653
AclWI	GGATC	1 cut(s)	695
AcoI	YGGCCR	2 cut(s)	307, 687
AcsI	RAATTY	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	4 cut(s)	24, 347, 444, 715
AfiI	CCNNNNNNNGG	2 cut(s)	104, 594
AgeI	ACCGGT	1 cut(s)	387
AgsI	TTSAA	4 cut(s)	143, 547, 619, 641
AjnI	CCWGG	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	3 cut(s)	119, 189, 481
AluI	AGCT	3 cut(s)	119, 189, 481
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	21
Alw44I	GTGCAC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	695
AoxI	GGCC	3 cut(s)	307, 596, 687
ApaLI	GTGCAC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	116, 552
ApoI	RAATTY	1 cut(s)	469
AsiGI	ACCGGT	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	597
AsuHPI	GGTGA	2 cut(s)	87, 674
BaeGI	GKGCMC	1 cut(s)	271
BalI	TGGCCA	2 cut(s)	309, 689
BanII	GRGCYC	1 cut(s)	521
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	128, 564
BccI	CCATC	3 cut(s)	35, 116, 122
BceAI	ACGGC	1 cut(s)	510
BciT130I	CCWGG	1 cut(s)	276
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	3 cut(s)	33, 71, 566
BisI	GCNGC	2 cut(s)	117, 553
BlsI	GCNGC	2 cut(s)	118, 554
BmcAI	AGTACT	1 cut(s)	715
Bme1390I	CCNGG	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	597
BmrFI	CCNGG	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	453
BsaWI	WCCGGW	3 cut(s)	19, 97, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 594
Bse118I	RCCGGY	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	627
Bse3DI	GCAATG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	276
BseGI	GGATG	3 cut(s)	106, 162, 271
BseJI	GATNNNNATC	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	104, 594
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	627
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	128, 564
BseYI	CCCAGC	2 cut(s)	50, 477
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	3 cut(s)	309, 598, 689
BshTI	ACCGGT	1 cut(s)	387
BsiEI	CGRYCG	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	3 cut(s)	20, 98, 388
BslI	CCNNNNNNNGG	2 cut(s)	104, 594
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	3 cut(s)	309, 598, 689
Bsp1286I	GDGCHC	2 cut(s)	271, 521
Bsp143I	GATC	3 cut(s)	448, 454, 700
BspANI	GGCC	3 cut(s)	309, 598, 689
BspCNI	CTCAG	1 cut(s)	239
BspPI	GGATC	1 cut(s)	695
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	627
BssAI	RCCGGY	1 cut(s)	387
BssMI	GATC	3 cut(s)	448, 454, 700
BssNAI	GTATAC	1 cut(s)	654
Bst1107I	GTATAC	1 cut(s)	654
Bst2UI	CCWGG	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	190, 226
BstEII	GGTNACC	1 cut(s)	662
BstF5I	GGATG	3 cut(s)	106, 162, 271
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	3 cut(s)	451, 457, 703
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	3 cut(s)	448, 454, 700
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	276
BstPI	GGTNACC	1 cut(s)	662
BstSCI	CCNGG	1 cut(s)	274
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	128, 564
BstZ17I	GTATAC	1 cut(s)	654
BsuRI	GGCC	3 cut(s)	309, 598, 689
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	106, 162, 271
BtsI	GCAGTG	3 cut(s)	43, 139, 461
BtsIMutI	CAGTG	5 cut(s)	43, 139, 399, 461, 634
CfoI	GCGC	1 cut(s)	579
Cfr10I	RCCGGY	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	597
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	4 cut(s)	23, 346, 443, 714
CspAI	ACCGGT	1 cut(s)	387
CviAII	CATG	1 cut(s)	580
CviQI	GTAC	4 cut(s)	23, 346, 443, 714
DdeI	CTNAG	2 cut(s)	190, 226
DpnI	GATC	3 cut(s)	450, 456, 702
DpnII	GATC	3 cut(s)	448, 454, 700
EaeI	YGGCCR	2 cut(s)	307, 687
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	69
Eco91I	GGTNACC	1 cut(s)	662
EcoO109I	RGGNCCY	1 cut(s)	597
EcoO65I	GGTNACC	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	521
FaeI	CATG	1 cut(s)	583
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FatI	CATG	1 cut(s)	579
FauNDI	CATATG	1 cut(s)	489
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	653
Fnu4HI	GCNGC	2 cut(s)	117, 553
FokI	GGATG	3 cut(s)	113, 169, 258
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	2 cut(s)	117, 553
FspAI	RTGCGCAY	1 cut(s)	578
FspBI	CTAG	3 cut(s)	33, 71, 566
FspI	TGCGCA	1 cut(s)	578
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	2 cut(s)	117, 553
GsaI	CCCAGC	2 cut(s)	54, 481
HaeIII	GGCC	3 cut(s)	309, 598, 689
HapII	CCGG	3 cut(s)	20, 98, 388
HgaI	GACGC	1 cut(s)	195
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	1 cut(s)	583
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	8 cut(s)	4, 14, 74, 89, 178, 222, 484, 527
HpaII	CCGG	3 cut(s)	20, 98, 388
HphI	GGTGA	2 cut(s)	87, 674
Hpy166II	GTNNAC	4 cut(s)	25, 210, 269, 654
Hpy188I	TCNGA	4 cut(s)	88, 229, 241, 563
Hpy188III	TCNNGA	2 cut(s)	182, 452
Hpy8I	GTNNAC	4 cut(s)	25, 210, 269, 654
HpyAV	CCTTC	3 cut(s)	98, 610, 613
HpyCH4V	TGCA	3 cut(s)	251, 269, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	2 cut(s)	190, 226
Hsp92II	CATG	1 cut(s)	583
HspAI	GCGC	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	448, 454, 700
Lsp1109I	GCAGC	2 cut(s)	128, 564
MaeI	CTAG	3 cut(s)	33, 71, 566
MaeIII	GTNAC	4 cut(s)	93, 334, 390, 662
MalI	GATC	3 cut(s)	450, 456, 702
MboI	GATC	3 cut(s)	448, 454, 700
MboII	GAAGA	4 cut(s)	21, 75, 242, 515
MhlI	GDGCHC	2 cut(s)	271, 521
MlsI	TGGCCA	2 cut(s)	309, 689
MluCI	AATT	1 cut(s)	469
MluNI	TGGCCA	2 cut(s)	309, 689
MlyI	GAGTC	5 cut(s)	13, 23, 83, 98, 216
MnlI	CCTC	4 cut(s)	187, 250, 306, 493
Mox20I	TGGCCA	2 cut(s)	309, 689
Mph1103I	ATGCAT	1 cut(s)	679
MscI	TGGCCA	2 cut(s)	309, 689
MseI	TTAA	5 cut(s)	362, 369, 408, 593, 606
Msp20I	TGGCCA	2 cut(s)	309, 689
MspA1I	CMGCKG	2 cut(s)	119, 481
MspI	CCGG	3 cut(s)	20, 98, 388
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeI	CATATG	1 cut(s)	489
NdeII	GATC	3 cut(s)	448, 454, 700
NlaIII	CATG	1 cut(s)	583
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	3 cut(s)	93, 334, 662
NsbI	TGCGCA	1 cut(s)	578
NsiI	ATGCAT	1 cut(s)	679
PfeI	GAWTC	3 cut(s)	178, 484, 527
PinAI	ACCGGT	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	118, 554
PleI	GAGTC	5 cut(s)	12, 22, 82, 97, 216
PpsI	GAGTC	5 cut(s)	12, 22, 82, 97, 216
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	662
PspFI	CCCAGC	2 cut(s)	50, 477
PspGI	CCWGG	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	597
PvuII	CAGCTG	2 cut(s)	119, 481
RsaI	GTAC	4 cut(s)	24, 347, 444, 715
RsaNI	GTAC	4 cut(s)	23, 346, 443, 714
SaqAI	TTAA	5 cut(s)	362, 369, 408, 593, 606
SatI	GCNGC	2 cut(s)	117, 553
Sau3AI	GATC	3 cut(s)	448, 454, 700
Sau96I	GGNCC	1 cut(s)	597
ScaI	AGTACT	1 cut(s)	715
SchI	GAGTC	5 cut(s)	13, 23, 83, 98, 216
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	2 cut(s)	271, 521
SetI	ASST	5 cut(s)	121, 174, 191, 317, 483
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	469
SspI	AATATT	2 cut(s)	509, 636
SspMI	CTAG	3 cut(s)	33, 71, 566
StyD4I	CCNGG	1 cut(s)	274
TaqI	TCGA	1 cut(s)	384
TaqII	GACCGA	1 cut(s)	681
TasI	AATT	1 cut(s)	469
TatI	WGTACW	1 cut(s)	713
TfiI	GAWTC	3 cut(s)	178, 484, 527
Tru1I	TTAA	5 cut(s)	362, 369, 408, 593, 606
Tru9I	TTAA	5 cut(s)	362, 369, 408, 593, 606
TscAI	CASTG	5 cut(s)	43, 139, 406, 468, 634
TseFI	GTSAC	3 cut(s)	93, 334, 662
TseI	GCWGC	2 cut(s)	116, 552
Tsp45I	GTSAC	3 cut(s)	93, 334, 662
TspDTI	ATGAA	5 cut(s)	117, 173, 270, 393, 592
TspRI	CASTG	5 cut(s)	43, 139, 406, 468, 634
VneI	GTGCAC	1 cut(s)	267
XapI	RAATTY	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	653
XspI	CTAG	3 cut(s)	33, 71, 566
ZrmI	AGTACT	1 cut(s)	715
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.