Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

61568206 .. 61570408

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG461500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAGTCTGGCCGAGTCTCCAGTACACTCTTCTAGCAGTGATGACTTTGCCGGGTTGCTTGAGAGAGAACTAAAGTCCAGTTCTTCAGAGTCATCACCAGAGGAAGAAGATGAAGATGATAAAGAAGCTGATGGTGATGGTGATGGCAGTGATGTTGAAAGTGAGAGCAGGATAAAAAGGCGTAAGGGAGATAATTTGGAAAGCGTAGAGGAAACTAATGGGTCAACTTCACAAGGACTTCCAGAACAAAAAAGCATCGGCAACGGAGGATACGTGTGCACATCCTCGGTCATTTGGAGATATGTGTTTTCGTTGTGGCCAGAGGTGATTGAGCAGTCTGGTGTGACATTTGGGTACATACAGAAGGGATTGAGACTTAATAATGATGAAATCGACCGGTTACGCAACACAGACATTAAGAAATCGCTAAATAATAAGAAACTTTATTTGGTACTGGATCTTGATCATACACTGCTAAATTCCACCCAGCTGAATCATATGACGGCAGAAGAAGAATATTTGATGAGCCCACCAGATTCACTGCCAGATGGGTTGAAAGGCAGCTTTTTCAGACTGGACTTTATGCGTATGATGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

200

Amino Acids

22.4

Weight (kDa)

4.53

Isoelectric Point (pI)

61.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	465
AcoI	YGGCCR	2 cut(s)	9, 317
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	3 cut(s)	24, 356, 453
AflIII	ACRYGT	1 cut(s)	273
AgeI	ACCGGT	1 cut(s)	396
AgsI	TTSAA	2 cut(s)	158, 556
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AluBI	AGCT	3 cut(s)	128, 490, 564
AluI	AGCT	3 cut(s)	128, 490, 564
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	2 cut(s)	21, 367
Alw44I	GTGCAC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	465
AoxI	GGCC	2 cut(s)	9, 317
ApaLI	GTGCAC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	561
ApoI	RAATTY	1 cut(s)	478
AsiGI	ACCGGT	1 cut(s)	396
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	4 cut(s)	87, 146, 152, 337
BaeGI	GKGCMC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	573
BccI	CCATC	4 cut(s)	125, 131, 137, 542
BceAI	ACGGC	1 cut(s)	519
BciVI	GTATCC	1 cut(s)	263
BclI	TGATCA	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	21, 367
BfaI	CTAG	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	562
BlsI	GCNGC	1 cut(s)	563
Bme1390I	CCNGG	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	285
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	4 cut(s)	20, 78, 459, 579
Bse8I	GATNNNNATC	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	281
BseJI	GATNNNNATC	1 cut(s)	462
BseNI	ACTGG	4 cut(s)	20, 78, 459, 579
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	573
BseYI	CCCAGC	1 cut(s)	486
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	2 cut(s)	11, 319
BshTI	ACCGGT	1 cut(s)	396
BsiEI	CGRYCG	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	281
BsiSI	CCGG	2 cut(s)	51, 397
BsmAI	GTCTC	2 cut(s)	21, 367
BsnI	GGCC	2 cut(s)	11, 319
Bsp1286I	GDGCHC	2 cut(s)	281, 530
Bsp143I	GATC	2 cut(s)	457, 463
BspANI	GGCC	2 cut(s)	11, 319
BspPI	GGATC	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	396
BsrI	ACTGG	4 cut(s)	20, 78, 459, 579
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	2 cut(s)	457, 463
Bst6I	CTCTTC	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	281
BstKTI	GATC	2 cut(s)	460, 466
BstMAI	GTCTC	2 cut(s)	21, 367
BstMBI	GATC	2 cut(s)	457, 463
BstMCI	CGRYCG	1 cut(s)	397
BstSCI	CCNGG	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	573
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	11, 319
BtsCI	GGATG	1 cut(s)	281
BtsI	GCAGTG	4 cut(s)	43, 154, 470, 539
BtsIMutI	CAGTG	4 cut(s)	43, 154, 470, 539
Cfr10I	RCCGGY	1 cut(s)	396
Csp6I	GTAC	3 cut(s)	23, 355, 452
CspAI	ACCGGT	1 cut(s)	396
CviJI	RGCY	6 cut(s)	11, 128, 319, 490, 528, 564
CviKI_1	RGCY	6 cut(s)	11, 128, 319, 490, 528, 564
CviQI	GTAC	3 cut(s)	23, 355, 452
DpnI	GATC	2 cut(s)	459, 465
DpnII	GATC	2 cut(s)	457, 463
EaeI	YGGCCR	2 cut(s)	9, 317
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	530
FaiI	YATR	7 cut(s)	303, 359, 468, 498, 500, 584, 590
FauNDI	CATATG	1 cut(s)	498
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	562
FokI	GGATG	1 cut(s)	268
FriOI	GRGCYC	1 cut(s)	530
Fsp4HI	GCNGC	1 cut(s)	562
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	562
GsaI	CCCAGC	1 cut(s)	490
HaeIII	GGCC	2 cut(s)	11, 319
HapII	CCGG	2 cut(s)	51, 397
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	5 cut(s)	4, 14, 89, 493, 536
HpaII	CCGG	2 cut(s)	51, 397
HphI	GGTGA	4 cut(s)	87, 146, 152, 337
Hpy166II	GTNNAC	3 cut(s)	25, 225, 279
Hpy188I	TCNGA	2 cut(s)	88, 572
Hpy188III	TCNNGA	2 cut(s)	242, 461
Hpy8I	GTNNAC	3 cut(s)	25, 225, 279
HpyAV	CCTTC	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	273
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	457, 463
Lsp1109I	GCAGC	1 cut(s)	573
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	343, 399
MalI	GATC	2 cut(s)	459, 465
MboI	GATC	2 cut(s)	457, 463
MboII	GAAGA	7 cut(s)	21, 75, 116, 119, 125, 521, 524
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	281, 530
MlsI	TGGCCA	1 cut(s)	319
MluCI	AATT	2 cut(s)	193, 478
MluNI	TGGCCA	1 cut(s)	319
MlyI	GAGTC	3 cut(s)	13, 23, 98
MnlI	CCTC	5 cut(s)	94, 202, 260, 295, 316
Mox20I	TGGCCA	1 cut(s)	319
MscI	TGGCCA	1 cut(s)	319
MseI	TTAA	2 cut(s)	378, 417
Msp20I	TGGCCA	1 cut(s)	319
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	2 cut(s)	51, 397
MspR9I	CCNGG	1 cut(s)	52
NciI	CCSGG	1 cut(s)	52
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	2 cut(s)	457, 463
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	493, 536
PinAI	ACCGGT	1 cut(s)	396
PkrI	GCNGC	1 cut(s)	563
PleI	GAGTC	3 cut(s)	12, 22, 97
PpsI	GAGTC	3 cut(s)	12, 22, 97
Ppu21I	YACGTR	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	3 cut(s)	24, 356, 453
RsaNI	GTAC	3 cut(s)	23, 355, 452
SaqAI	TTAA	2 cut(s)	378, 417
SatI	GCNGC	1 cut(s)	562
Sau3AI	GATC	2 cut(s)	457, 463
SchI	GAGTC	3 cut(s)	13, 23, 98
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	2 cut(s)	281, 530
SetI	ASST	5 cut(s)	130, 276, 327, 492, 566
SfaNI	GCATC	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	193, 478
SspI	AATATT	1 cut(s)	518
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	50
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	393
TaqII	GACCGA	1 cut(s)	277
TasI	AATT	2 cut(s)	193, 478
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	493, 536
Tru1I	TTAA	2 cut(s)	378, 417
Tru9I	TTAA	2 cut(s)	378, 417
TscAI	CASTG	4 cut(s)	43, 154, 477, 546
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	1 cut(s)	561
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	126, 402
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	4 cut(s)	43, 154, 477, 546
VneI	GTGCAC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	478
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.