Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

59521531 .. 59523257

Gene Structure 1727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21042

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCATGAGACCAACTTACTTAGTAAAAGCATCGGCAACGGAGGATACGTGTGCACATCCTCGGTCATTTGGAGATATGTGTTTTCGTTGTGGCCAGAGGTGATTGAGCAGTCTGGTGTGACATTTGGGTACATACAGAAGGGATTGAGACTTAATAATGATGAAATCGACCGGTTACGCAACACAGACATTAAGAAATCGCTAAATAATAAGAAACTTTATTTGGTACTGGATCTTGATCATACACTGCTAAATTCCACCCAGCTGAATCATATGACGGCAGAAGAAGAATATTTGATGAGCCCACCAGATTCACTGCCAGATGGGTTGAAAGGCAGCTTTTTCAGACTGGACTTTATGCGTATGATGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

125

Amino Acids

14.44

Weight (kDa)

6.27

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	253
AfaI	GTAC	2 cut(s)	131, 228
AflIII	ACRYGT	1 cut(s)	48
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	331
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	2 cut(s)	265, 339
AluI	AGCT	2 cut(s)	265, 339
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	2 cut(s)	2, 142
Alw44I	GTGCAC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	240
AoxI	GGCC	1 cut(s)	92
ApaLI	GTGCAC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	336
ApoI	RAATTY	1 cut(s)	253
AsiGI	ACCGGT	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	38
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	2, 142
BfuI	GTATCC	1 cut(s)	38
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
BmsI	GCATC	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	49
BsaBI	GATNNNNATC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	2 cut(s)	234, 354
Bse8I	GATNNNNATC	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	56
BseJI	GATNNNNATC	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	234, 354
BseSI	GKGCMC	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	348
BseYI	CCCAGC	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	1 cut(s)	94
BshTI	ACCGGT	1 cut(s)	171
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	2, 142
BsnI	GGCC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	2
Bsp1286I	GDGCHC	2 cut(s)	56, 305
Bsp143I	GATC	2 cut(s)	232, 238
BspANI	GGCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	2
BsrFI	RCCGGY	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	234, 354
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	232, 238
BstBAI	YACGTR	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	2 cut(s)	235, 241
BstMAI	GTCTC	2 cut(s)	2, 142
BstMBI	GATC	2 cut(s)	232, 238
BstMCI	CGRYCG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	56
BtsI	GCAGTG	2 cut(s)	245, 314
BtsIMutI	CAGTG	2 cut(s)	245, 314
Cfr10I	RCCGGY	1 cut(s)	171
Csp6I	GTAC	2 cut(s)	130, 227
CspAI	ACCGGT	1 cut(s)	171
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	4 cut(s)	94, 265, 303, 339
CviKI_1	RGCY	4 cut(s)	94, 265, 303, 339
CviQI	GTAC	2 cut(s)	130, 227
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	2 cut(s)	234, 240
DpnII	GATC	2 cut(s)	232, 238
EaeI	YGGCCR	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	2
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	305
FaeI	CATG	1 cut(s)	8
FaiI	YATR	8 cut(s)	6, 78, 134, 243, 273, 275, 359, 365
FatI	CATG	1 cut(s)	4
FauNDI	CATATG	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	337
FokI	GGATG	1 cut(s)	43
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	337
GsaI	CCCAGC	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	172
Hin1II	CATG	1 cut(s)	8
HinfI	GANTC	2 cut(s)	268, 311
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	347
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	4, 54
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	232, 238
LpnPI	CCDG	8 cut(s)	99, 108, 185, 215, 275, 321, 333, 335
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	39
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	118, 174
MalI	GATC	2 cut(s)	234, 240
MboI	GATC	2 cut(s)	232, 238
MboII	GAAGA	2 cut(s)	296, 299
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	2 cut(s)	56, 305
MlsI	TGGCCA	1 cut(s)	94
MluCI	AATT	1 cut(s)	253
MluNI	TGGCCA	1 cut(s)	94
MnlI	CCTC	3 cut(s)	35, 70, 91
Mox20I	TGGCCA	1 cut(s)	94
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	94
MseI	TTAA	2 cut(s)	153, 192
Msp20I	TGGCCA	1 cut(s)	94
MspA1I	CMGCKG	1 cut(s)	265
MspI	CCGG	1 cut(s)	172
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	2 cut(s)	232, 238
NlaIII	CATG	1 cut(s)	8
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	268, 311
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	2 cut(s)	131, 228
RsaNI	GTAC	2 cut(s)	130, 227
SaqAI	TTAA	2 cut(s)	153, 192
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	2 cut(s)	232, 238
SduI	GDGCHC	2 cut(s)	56, 305
SetI	ASST	4 cut(s)	51, 102, 267, 341
SfaNI	GCATC	1 cut(s)	39
Sse9I	AATT	1 cut(s)	253
SspI	AATATT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	168
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	1 cut(s)	253
TfiI	GAWTC	2 cut(s)	268, 311
Tru1I	TTAA	2 cut(s)	153, 192
Tru9I	TTAA	2 cut(s)	153, 192
TscAI	CASTG	2 cut(s)	252, 321
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	336
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	177
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	252, 321
VneI	GTGCAC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.