RNA polymerase II C-terminal domain phosphatase-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 998, 1121 |
| AclWI | GGATC | 5 cut(s) | 566, 673, 924, 1028, 1041 |
| AcsI | RAATTY | 2 cut(s) | 340, 1141 |
| AcuI | CTGAAG | 2 cut(s) | 941, 1185 |
| AcvI | CACGTG | 1 cut(s) | 1051 |
| AdeI | CACNNNGTG | 1 cut(s) | 430 |
| AfaI | GTAC | 3 cut(s) | 215, 315, 445 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 465, 961 |
| AflIII | ACRYGT | 2 cut(s) | 418, 1048 |
| AgsI | TTSAA | 4 cut(s) | 385, 860, 949, 1023 |
| AjiI | CACGTC | 1 cut(s) | 934 |
| AjnI | CCWGG | 2 cut(s) | 188, 717 |
| AleI | CACNNNNGTG | 1 cut(s) | 1049 |
| AluBI | AGCT | 4 cut(s) | 497, 514, 839, 1013 |
| AluI | AGCT | 4 cut(s) | 497, 514, 839, 1013 |
| Alw21I | GWGCWC | 1 cut(s) | 623 |
| Alw26I | GTCTC | 4 cut(s) | 25, 137, 534, 924 |
| AlwI | GGATC | 5 cut(s) | 566, 673, 924, 1028, 1041 |
| Ama87I | CYCGRG | 1 cut(s) | 660 |
| AoxI | GGCC | 2 cut(s) | 467, 778 |
| ApeKI | GCWGC | 1 cut(s) | 1058 |
| ApoI | RAATTY | 2 cut(s) | 340, 1141 |
| AseI | ATTAAT | 1 cut(s) | 110 |
| AspLEI | GCGC | 1 cut(s) | 550 |
| AsuC2I | CCSGG | 1 cut(s) | 441 |
| AsuHPI | GGTGA | 2 cut(s) | 357, 1126 |
| AvaI | CYCGRG | 1 cut(s) | 660 |
| BamHI | GGATCC | 1 cut(s) | 1033 |
| BbrPI | CACGTG | 1 cut(s) | 1051 |
| BbsI | GAAGAC | 3 cut(s) | 186, 392, 1173 |
| Bbv12I | GWGCWC | 1 cut(s) | 623 |
| BbvI | GCAGC | 1 cut(s) | 1070 |
| BccI | CCATC | 1 cut(s) | 988 |
| BciT130I | CCWGG | 2 cut(s) | 190, 719 |
| BclI | TGATCA | 1 cut(s) | 403 |
| BcnI | CCSGG | 1 cut(s) | 441 |
| BcoDI | GTCTC | 4 cut(s) | 25, 137, 534, 924 |
| BfaI | CTAG | 5 cut(s) | 104, 323, 498, 644, 762 |
| BglII | AGATCT | 1 cut(s) | 758 |
| BisI | GCNGC | 1 cut(s) | 1059 |
| BlsI | GCNGC | 1 cut(s) | 1060 |
| BmcAI | AGTACT | 1 cut(s) | 315 |
| Bme1390I | CCNGG | 3 cut(s) | 190, 441, 719 |
| BmeT110I | CYCGRG | 1 cut(s) | 660 |
| BmgBI | CACGTC | 1 cut(s) | 934 |
| BmiI | GGNNCC | 1 cut(s) | 1035 |
| BmrFI | CCNGG | 3 cut(s) | 190, 441, 719 |
| BmsI | GCATC | 2 cut(s) | 891, 1054 |
| BpiI | GAAGAC | 3 cut(s) | 186, 392, 1173 |
| BpmI | CTGGAG | 1 cut(s) | 219 |
| Bpu10I | CCTNAGC | 1 cut(s) | 229 |
| BpuEI | CTTGAG | 1 cut(s) | 47 |
| BpuMI | CCSGG | 1 cut(s) | 441 |
| BsaAI | YACGTR | 2 cut(s) | 611, 1051 |
| BsaBI | GATNNNNATC | 1 cut(s) | 978 |
| BsaJI | CCNNGG | 1 cut(s) | 528 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 7, 37 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 465, 961 |
| Bse8I | GATNNNNATC | 1 cut(s) | 978 |
| BseBI | CCWGG | 2 cut(s) | 190, 719 |
| BseDI | CCNNGG | 1 cut(s) | 528 |
| BseGI | GGATG | 1 cut(s) | 979 |
| BseJI | GATNNNNATC | 1 cut(s) | 978 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 465, 961 |
| BseMII | CTCAG | 2 cut(s) | 792, 796 |
| BseRI | GAGGAG | 3 cut(s) | 133, 194, 849 |
| BseXI | GCAGC | 1 cut(s) | 1070 |
| BshFI | GGCC | 2 cut(s) | 469, 780 |
| BsiHKAI | GWGCWC | 1 cut(s) | 623 |
| BsiHKCI | CYCGRG | 1 cut(s) | 660 |
| BsiSI | CCGG | 1 cut(s) | 441 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 465, 961 |
| BsmAI | GTCTC | 4 cut(s) | 25, 137, 534, 924 |
| BsmBI | CGTCTC | 3 cut(s) | 25, 137, 924 |
| BsnI | GGCC | 2 cut(s) | 469, 780 |
| BsoBI | CYCGRG | 1 cut(s) | 660 |
| Bsp1286I | GDGCHC | 1 cut(s) | 623 |
| Bsp19I | CCATGG | 1 cut(s) | 528 |
| BspACI | CCGC | 2 cut(s) | 998, 1121 |
| BspANI | GGCC | 2 cut(s) | 469, 780 |
| BspCNI | CTCAG | 2 cut(s) | 793, 795 |
| BspHI | TCATGA | 1 cut(s) | 241 |
| BspLI | GGNNCC | 1 cut(s) | 1035 |
| BspPI | GGATC | 5 cut(s) | 566, 673, 924, 1028, 1041 |
| BssECI | CCNNGG | 1 cut(s) | 528 |
| BssT1I | CCWWGG | 1 cut(s) | 528 |
| Bst2UI | CCWGG | 2 cut(s) | 190, 719 |
| Bst4CI | ACNGT | 5 cut(s) | 19, 709, 1042, 1093, 1172 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 170, 1064 |
| BstBAI | YACGTR | 2 cut(s) | 611, 1051 |
| BstC8I | GCNNGC | 2 cut(s) | 495, 657 |
| BstDEI | CTNAG | 5 cut(s) | 229, 561, 782, 801, 866 |
| BstDSI | CCRYGG | 1 cut(s) | 528 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 959 |
| BstF5I | GGATG | 1 cut(s) | 979 |
| BstHHI | GCGC | 1 cut(s) | 550 |
| BstMAI | GTCTC | 4 cut(s) | 25, 137, 534, 924 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 170, 845, 1064 |
| BstNI | CCWGG | 2 cut(s) | 190, 719 |
| BstNSI | RCATGY | 2 cut(s) | 422, 875 |
| BstSCI | CCNGG | 3 cut(s) | 188, 439, 717 |
| BstV1I | GCAGC | 1 cut(s) | 1070 |
| BstV2I | GAAGAC | 3 cut(s) | 186, 392, 1173 |
| BstX2I | RGATCY | 3 cut(s) | 758, 916, 1033 |
| BstYI | RGATCY | 3 cut(s) | 758, 916, 1033 |
| BsuRI | GGCC | 2 cut(s) | 469, 780 |
| BtgI | CCRYGG | 1 cut(s) | 528 |
| BtrI | CACGTC | 1 cut(s) | 934 |
| BtsCI | GGATG | 1 cut(s) | 979 |
| BtsI | GCAGTG | 2 cut(s) | 1130, 1134 |
| BtsIMutI | CAGTG | 2 cut(s) | 1130, 1134 |
| Cac8I | GCNNGC | 2 cut(s) | 495, 657 |
| CciI | TCATGA | 1 cut(s) | 241 |
| CfoI | GCGC | 1 cut(s) | 550 |
| Csp6I | GTAC | 3 cut(s) | 214, 314, 444 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 334, 369, 1011, 1046 |
| CviAII | CATG | 5 cut(s) | 242, 419, 529, 872, 1147 |
| CviQI | GTAC | 3 cut(s) | 214, 314, 444 |
| DdeI | CTNAG | 5 cut(s) | 229, 561, 782, 801, 866 |
| DraIII | CACNNNGTG | 1 cut(s) | 430 |
| EciI | GGCGGA | 1 cut(s) | 1013 |
| Eco130I | CCWWGG | 1 cut(s) | 528 |
| Eco147I | AGGCCT | 1 cut(s) | 469 |
| Eco57I | CTGAAG | 2 cut(s) | 941, 1185 |
| Eco72I | CACGTG | 1 cut(s) | 1051 |
| Eco88I | CYCGRG | 1 cut(s) | 660 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 959 |
| EcoRI | GAATTC | 1 cut(s) | 340 |
| EcoRII | CCWGG | 2 cut(s) | 188, 717 |
| EcoT14I | CCWWGG | 1 cut(s) | 528 |
| ErhI | CCWWGG | 1 cut(s) | 528 |
| Esp3I | CGTCTC | 3 cut(s) | 25, 137, 924 |
| FaeI | CATG | 5 cut(s) | 245, 422, 532, 875, 1150 |
| FatI | CATG | 5 cut(s) | 241, 418, 528, 871, 1146 |
| FbaI | TGATCA | 1 cut(s) | 403 |
| Fnu4HI | GCNGC | 1 cut(s) | 1059 |
| FokI | GGATG | 1 cut(s) | 966 |
| Fsp4HI | GCNGC | 1 cut(s) | 1059 |
| FspBI | CTAG | 5 cut(s) | 104, 323, 498, 644, 762 |
| GlaI | GCGC | 1 cut(s) | 549 |
| GluI | GCNGC | 1 cut(s) | 1059 |
| GsuI | CTGGAG | 1 cut(s) | 219 |
| HaeIII | GGCC | 2 cut(s) | 469, 780 |
| HapII | CCGG | 1 cut(s) | 441 |
| HhaI | GCGC | 1 cut(s) | 550 |
| Hin1II | CATG | 5 cut(s) | 245, 422, 532, 875, 1150 |
| Hin6I | GCGC | 1 cut(s) | 548 |
| HinP1I | GCGC | 1 cut(s) | 548 |
| HincII | GTYRAC | 3 cut(s) | 101, 712, 770 |
| HindII | GTYRAC | 3 cut(s) | 101, 712, 770 |
| HinfI | GANTC | 5 cut(s) | 86, 388, 665, 1117, 1129 |
| HpaII | CCGG | 1 cut(s) | 441 |
| HphI | GGTGA | 2 cut(s) | 357, 1126 |
| Hpy166II | GTNNAC | 7 cut(s) | 101, 260, 424, 433, 712, 770, 877 |
| Hpy188I | TCNGA | 4 cut(s) | 91, 403, 802, 960 |
| Hpy188III | TCNNGA | 6 cut(s) | 64, 198, 242, 539, 644, 901 |
| Hpy8I | GTNNAC | 7 cut(s) | 101, 260, 424, 433, 712, 770, 877 |
| HpyAV | CCTTC | 3 cut(s) | 955, 965, 1094 |
| HpyCH4III | ACNGT | 5 cut(s) | 19, 709, 1042, 1093, 1172 |
| HpyCH4IV | ACGT | 3 cut(s) | 610, 933, 1050 |
| HpyCH4V | TGCA | 9 cut(s) | 34, 96, 173, 292, 415, 493, 848, 1058, 1139 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 170, 845, 1064 |
| HpyF3I | CTNAG | 5 cut(s) | 229, 561, 782, 801, 866 |
| HpySE526I | ACGT | 3 cut(s) | 610, 933, 1050 |
| Hsp92II | CATG | 5 cut(s) | 245, 422, 532, 875, 1150 |
| HspAI | GCGC | 1 cut(s) | 548 |
| Ksp22I | TGATCA | 1 cut(s) | 403 |
| LmnI | GCTCC | 3 cut(s) | 836, 1000, 1010 |
| Lsp1109I | GCAGC | 1 cut(s) | 1070 |
| LweI | GCATC | 2 cut(s) | 891, 1054 |
| MaeI | CTAG | 5 cut(s) | 104, 323, 498, 644, 762 |
| MaeII | ACGT | 3 cut(s) | 610, 933, 1050 |
| MaeIII | GTNAC | 3 cut(s) | 131, 363, 1042 |
| MboII | GAAGA | 8 cut(s) | 170, 186, 397, 641, 877, 1003, 1109, 1178 |
| MfeI | CAATTG | 1 cut(s) | 449 |
| MflI | RGATCY | 3 cut(s) | 758, 916, 1033 |
| MhlI | GDGCHC | 1 cut(s) | 623 |
| MluCI | AATT | 7 cut(s) | 27, 107, 249, 340, 449, 773, 1141 |
| MlyI | GAGTC | 1 cut(s) | 382 |
| MmeI | TCCRAC | 2 cut(s) | 1061, 1067 |
| MnlI | CCTC | 7 cut(s) | 62, 68, 111, 172, 791, 827, 930 |
| MseI | TTAA | 6 cut(s) | 110, 237, 488, 806, 891, 1195 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1049 |
| MspI | CCGG | 1 cut(s) | 441 |
| MspR9I | CCNGG | 3 cut(s) | 190, 441, 719 |
| MunI | CAATTG | 1 cut(s) | 449 |
| MvaI | CCWGG | 2 cut(s) | 190, 719 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 170, 845, 1064 |
| NciI | CCSGG | 1 cut(s) | 441 |
| NcoI | CCATGG | 1 cut(s) | 528 |
| NlaIII | CATG | 5 cut(s) | 245, 422, 532, 875, 1150 |
| NlaIV | GGNNCC | 1 cut(s) | 1035 |
| NmuCI | GTSAC | 2 cut(s) | 363, 1042 |
| NspI | RCATGY | 2 cut(s) | 422, 875 |
| OliI | CACNNNNGTG | 1 cut(s) | 1049 |
| PagI | TCATGA | 1 cut(s) | 241 |
| PceI | AGGCCT | 1 cut(s) | 469 |
| PciI | ACATGT | 1 cut(s) | 418 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 930 |
| PfeI | GAWTC | 4 cut(s) | 86, 665, 1117, 1129 |
| PkrI | GCNGC | 1 cut(s) | 1060 |
| PleI | GAGTC | 1 cut(s) | 382 |
| PmaCI | CACGTG | 1 cut(s) | 1051 |
| PmlI | CACGTG | 1 cut(s) | 1051 |
| PpsI | GAGTC | 1 cut(s) | 382 |
| Ppu21I | YACGTR | 2 cut(s) | 611, 1051 |
| PscI | ACATGT | 1 cut(s) | 418 |
| PshBI | ATTAAT | 1 cut(s) | 110 |
| Psp6I | CCWGG | 2 cut(s) | 188, 717 |
| PspCI | CACGTG | 1 cut(s) | 1051 |
| PspGI | CCWGG | 2 cut(s) | 188, 717 |
| PspN4I | GGNNCC | 1 cut(s) | 1035 |
| PsuI | RGATCY | 3 cut(s) | 758, 916, 1033 |
| RsaI | GTAC | 3 cut(s) | 215, 315, 445 |
| RsaNI | GTAC | 3 cut(s) | 214, 314, 444 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1049 |
| SaqAI | TTAA | 6 cut(s) | 110, 237, 488, 806, 891, 1195 |
| SatI | GCNGC | 1 cut(s) | 1059 |
| ScaI | AGTACT | 1 cut(s) | 315 |
| SchI | GAGTC | 1 cut(s) | 382 |
| ScrFI | CCNGG | 3 cut(s) | 190, 441, 719 |
| SduI | GDGCHC | 1 cut(s) | 623 |
| SfaNI | GCATC | 2 cut(s) | 891, 1054 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1049 |
| SmlI | CTYRAG | 1 cut(s) | 62 |
| SmoI | CTYRAG | 1 cut(s) | 62 |
| Sse9I | AATT | 7 cut(s) | 27, 107, 249, 340, 449, 773, 1141 |
| SseBI | AGGCCT | 1 cut(s) | 469 |
| SsiI | CCGC | 2 cut(s) | 998, 1121 |
| SspI | AATATT | 1 cut(s) | 380 |
| SspMI | CTAG | 5 cut(s) | 104, 323, 498, 644, 762 |
| StuI | AGGCCT | 1 cut(s) | 469 |
| StyD4I | CCNGG | 3 cut(s) | 188, 439, 717 |
| StyI | CCWWGG | 1 cut(s) | 528 |
| TaaI | ACNGT | 5 cut(s) | 19, 709, 1042, 1093, 1172 |
| TaiI | ACGT | 3 cut(s) | 613, 936, 1053 |
| TaqI | TCGA | 5 cut(s) | 538, 634, 900, 924, 1069 |
| TasI | AATT | 7 cut(s) | 27, 107, 249, 340, 449, 773, 1141 |
| TatI | WGTACW | 1 cut(s) | 313 |
| TfiI | GAWTC | 4 cut(s) | 86, 665, 1117, 1129 |
| Tru1I | TTAA | 6 cut(s) | 110, 237, 488, 806, 891, 1195 |
| Tru9I | TTAA | 6 cut(s) | 110, 237, 488, 806, 891, 1195 |
| TscAI | CASTG | 2 cut(s) | 1130, 1141 |
| TseFI | GTSAC | 2 cut(s) | 363, 1042 |
| TseI | GCWGC | 1 cut(s) | 1058 |
| Tsp45I | GTSAC | 2 cut(s) | 363, 1042 |
| TspDTI | ATGAA | 6 cut(s) | 171, 261, 296, 831, 909, 1135 |
| TspRI | CASTG | 2 cut(s) | 1130, 1141 |
| VspI | ATTAAT | 1 cut(s) | 110 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 959 |
| XapI | RAATTY | 2 cut(s) | 340, 1141 |
| XbaI | TCTAGA | 1 cut(s) | 643 |
| XceI | RCATGY | 2 cut(s) | 422, 875 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 526 |
| XspI | CTAG | 5 cut(s) | 104, 323, 498, 644, 762 |
| ZrmI | AGTACT | 1 cut(s) | 315 |