Rmu_sc0015353.1_g000005

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015353.1
Physical Location & Seq
Reverse (-)
23661 .. 27616
3956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015353.1_g000005.1.cds

Sequence Viewer

Length: 978 bp
atgagtctggtcgagtctccagtacactcttctagcagtgatgactttgccgggttgcttgagagagaactaaagtccagttcttcagagtcatcaccagaggaagaagatgaagatgataaagaagctgatggtaaccaaaaacatcaaaagggtctagatattgtggttgggcaagaaagtgctgttctgatactggatgatacagaaaatgttctgaaaactgttaggaaggaagtcttgaaggggtgcaaagttgttttcagccgtataattccttcaaaagtccaggctgataatcatcacctgtggaagatggcggagcagctgggagccatatgttcaaccaaagtggattcatcagtgacccatgatcttccaaggagtttctatgagttgaaagctattgaaacgctgttctttctggctgttcgaaatttgaaagattggacgccggcattgggaagatgccttcaaatcccagaaaccaccgccgcccaacttgaagatcccaacttcaggagtccagaaccggcggcctcacccccagaaccggccggaaaaccaccgaaccggccatcggaagaagccaaagtccctctgcccggttcaaagccttcctcacatcctcctgcagccatactcgactacctgcagcgtctccaccccagcccaagccaaaggttgagcccacttgcagcaggcccacgtgcagcaagccaagccaagccgccaagccaagccaccaagccaagccaaaccaatctgccacgtcagcacatcaggtcaacgaaagtcaacaccggtcaacacttttccggccactttccggcaacttttccggccacttttcggcgacttttccagccactttcctgcgactttttccgatcagctacagtaactccggcagctacagtacttccggccgctacagtaccttccggcgacgcctttttcgaccatcttttaaggtaa

Protein Analysis

325

Amino Acids

35.43

Weight (kDa)

6.42

Isoelectric Point (pI)

68.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000221)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58003 AT5G58003 AT5G58003
fragaria_vesca FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica MD09G1131300.v1.1
prunus_persica Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis pycom09g05350
rosa_chinensis RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 660
AciI CCGC 6 cut(s) 320, 492, 495, 536, 731, 930
AclWI GGATC 1 cut(s) 503
AcoI YGGCCR 5 cut(s) 555, 575, 820, 843, 927
AcsI RAATTY 1 cut(s) 436
AcuI CTGAAG 2 cut(s) 69, 502
AcvI CACGTG 1 cut(s) 710
AcyI GRCGYC 2 cut(s) 452, 951
AfaI GTAC 3 cut(s) 24, 921, 939
AfiI CCNNNNNNNGG 7 cut(s) 461, 519, 553, 580, 605, 829, 852
AgeI ACCGGT 1 cut(s) 803
AgsI TTSAA 9 cut(s) 244, 282, 345, 400, 410, 442, 476, 506, 612
AjiI CACGTC 1 cut(s) 773
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 5 cut(s) 128, 328, 404, 896, 914
AluI AGCT 5 cut(s) 128, 328, 404, 896, 914
Alw26I GTCTC 2 cut(s) 21, 665
AlwI GGATC 1 cut(s) 503
AoxI GGCC 7 cut(s) 537, 555, 575, 703, 820, 843, 927
ApeKI GCWGC 6 cut(s) 325, 635, 655, 698, 713, 911
ApoI RAATTY 1 cut(s) 436
ArsI GACNNNNNNTTYG 2 cut(s) 941, 973
AsiGI ACCGGT 1 cut(s) 803
Asp700I GAANNNNTTC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 704
AsuC2I CCSGG 2 cut(s) 52, 606
AsuHPI GGTGA 3 cut(s) 87, 296, 534
AsuII TTCGAA 1 cut(s) 433
BanII GRGCYC 1 cut(s) 692
BarI GAAGNNNNNNTAC 2 cut(s) 262, 294
BbrPI CACGTG 1 cut(s) 710
BbvI GCAGC 6 cut(s) 337, 647, 667, 710, 725, 923
BccI CCATC 4 cut(s) 125, 310, 586, 972
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 1 cut(s) 290
BcnI CCSGG 2 cut(s) 52, 606
BcoDI GTCTC 2 cut(s) 21, 665
BfaI CTAG 2 cut(s) 33, 158
BfmI CTRYAG 5 cut(s) 633, 653, 897, 915, 933
BfuAI ACCTGC 1 cut(s) 660
BmcAI AGTACT 1 cut(s) 921
Bme1390I CCNGG 3 cut(s) 52, 290, 606
BmgBI CACGTC 1 cut(s) 773
BmgT120I GGNCC 1 cut(s) 704
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 3 cut(s) 52, 290, 606
BmsI GCATC 1 cut(s) 458
Bpu14I TTCGAA 1 cut(s) 433
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 2 cut(s) 52, 606
BsaAI YACGTR 1 cut(s) 710
BsaBI GATNNNNATC 1 cut(s) 300
BsaHI GRCGYC 2 cut(s) 452, 951
BsaJI CCNNGG 1 cut(s) 380
BsaWI WCCGGW 1 cut(s) 803
BsaXI ACNNNNNCTCC 2 cut(s) 889, 919
Bsc4I CCNNNNNNNGG 7 cut(s) 461, 519, 553, 580, 605, 829, 852
Bse118I RCCGGY 5 cut(s) 454, 532, 553, 573, 803
Bse1I ACTGG 3 cut(s) 20, 78, 201
Bse8I GATNNNNATC 1 cut(s) 300
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 380
BseGI GGATG 2 cut(s) 205, 625
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 7 cut(s) 461, 519, 553, 580, 605, 829, 852
BseNI ACTGG 3 cut(s) 20, 78, 201
BseX3I CGGCCG 2 cut(s) 555, 927
BseXI GCAGC 6 cut(s) 337, 647, 667, 710, 725, 923
BseYI CCCAGC 2 cut(s) 328, 668
BsgI GTGCAG 1 cut(s) 732
Bsh1285I CGRYCG 2 cut(s) 558, 930
BshFI GGCC 7 cut(s) 539, 557, 577, 705, 822, 845, 929
BshTI ACCGGT 1 cut(s) 803
BsiEI CGRYCG 2 cut(s) 558, 930
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 7 cut(s) 461, 519, 553, 580, 605, 829, 852
BsmAI GTCTC 2 cut(s) 21, 665
BsmBI CGTCTC 1 cut(s) 665
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 7 cut(s) 539, 557, 577, 705, 822, 845, 929
Bsp119I TTCGAA 1 cut(s) 433
Bsp1286I GDGCHC 1 cut(s) 692
Bsp143I GATC 3 cut(s) 373, 508, 890
BspACI CCGC 6 cut(s) 320, 492, 495, 536, 731, 930
BspANI GGCC 7 cut(s) 539, 557, 577, 705, 822, 845, 929
BspLI GGNNCC 1 cut(s) 334
BspMAI CTGCAG 2 cut(s) 637, 657
BspMI ACCTGC 1 cut(s) 660
BspPI GGATC 1 cut(s) 503
BspT104I TTCGAA 1 cut(s) 433
BsrFI RCCGGY 5 cut(s) 454, 532, 553, 573, 803
BsrI ACTGG 3 cut(s) 20, 78, 201
BssAI RCCGGY 5 cut(s) 454, 532, 553, 573, 803
BssECI CCNNGG 1 cut(s) 380
BssMI GATC 3 cut(s) 373, 508, 890
BssNI GRCGYC 2 cut(s) 452, 951
BssT1I CCWWGG 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 4 cut(s) 226, 901, 919, 937
Bst6I CTCTTC 1 cut(s) 34
BstACI GRCGYC 2 cut(s) 452, 951
BstBAI YACGTR 1 cut(s) 710
BstBI TTCGAA 1 cut(s) 433
BstC8I GCNNGC 3 cut(s) 456, 703, 718
BstEII GGTNACC 1 cut(s) 134
BstF5I GGATG 2 cut(s) 205, 625
BstKTI GATC 3 cut(s) 376, 511, 893
BstMAI GTCTC 2 cut(s) 21, 665
BstMBI GATC 3 cut(s) 373, 508, 890
BstMCI CGRYCG 2 cut(s) 558, 930
BstMWI GCNNNNNNNGC 2 cut(s) 722, 775
BstNI CCWGG 1 cut(s) 290
BstPI GGTNACC 1 cut(s) 134
BstSCI CCNGG 3 cut(s) 50, 288, 604
BstSFI CTRYAG 5 cut(s) 633, 653, 897, 915, 933
BstV1I GCAGC 6 cut(s) 337, 647, 667, 710, 725, 923
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
BstZI CGGCCG 2 cut(s) 555, 927
BsuRI GGCC 7 cut(s) 539, 557, 577, 705, 822, 845, 929
BtrI CACGTC 1 cut(s) 773
BtsCI GGATG 2 cut(s) 205, 625
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 43, 369
BveI ACCTGC 1 cut(s) 660
Cac8I GCNNGC 3 cut(s) 456, 703, 718
Cfr10I RCCGGY 5 cut(s) 454, 532, 553, 573, 803
Cfr13I GGNCC 1 cut(s) 704
CseI GACGC 3 cut(s) 460, 647, 959
Csp6I GTAC 3 cut(s) 23, 920, 938
CspAI ACCGGT 1 cut(s) 803
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 1 cut(s) 371
CviQI GTAC 3 cut(s) 23, 920, 938
DpnI GATC 3 cut(s) 375, 510, 892
DpnII GATC 3 cut(s) 373, 508, 890
EaeI YGGCCR 5 cut(s) 555, 575, 820, 843, 927
EagI CGGCCG 2 cut(s) 555, 927
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 335
EclXI CGGCCG 2 cut(s) 555, 927
Eco130I CCWWGG 1 cut(s) 380
Eco24I GRGCYC 1 cut(s) 692
Eco52I CGGCCG 2 cut(s) 555, 927
Eco57I CTGAAG 2 cut(s) 69, 502
Eco72I CACGTG 1 cut(s) 710
Eco91I GGTNACC 1 cut(s) 134
EcoO65I GGTNACC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 380
EcoT38I GRGCYC 1 cut(s) 692
ErhI CCWWGG 1 cut(s) 380
Esp3I CGTCTC 1 cut(s) 665
FaeI CATG 1 cut(s) 374
FaiI YATR 6 cut(s) 272, 338, 340, 372, 393, 641
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FaqI GGGAC 1 cut(s) 581
FatI CATG 1 cut(s) 370
FauNDI CATATG 1 cut(s) 338
FokI GGATG 2 cut(s) 212, 612
FriOI GRGCYC 1 cut(s) 692
FspBI CTAG 2 cut(s) 33, 158
GsaI CCCAGC 2 cut(s) 332, 672
HaeIII GGCC 7 cut(s) 539, 557, 577, 705, 822, 845, 929
HgaI GACGC 3 cut(s) 460, 647, 959
Hin1I GRCGYC 2 cut(s) 452, 951
Hin1II CATG 1 cut(s) 374
HincII GTYRAC 3 cut(s) 789, 799, 809
HindII GTYRAC 3 cut(s) 789, 799, 809
HinfI GANTC 5 cut(s) 4, 14, 89, 356, 523
HphI GGTGA 3 cut(s) 87, 296, 534
Hpy166II GTNNAC 4 cut(s) 25, 789, 799, 809
Hpy188I TCNGA 5 cut(s) 88, 192, 219, 583, 890
Hpy188III TCNNGA 4 cut(s) 158, 241, 520, 527
Hpy8I GTNNAC 4 cut(s) 25, 789, 799, 809
Hpy99I CGWCG 1 cut(s) 953
HpyAV CCTTC 6 cut(s) 226, 238, 288, 482, 627, 951
HpyCH4III ACNGT 4 cut(s) 226, 901, 919, 937
HpyCH4IV ACGT 2 cut(s) 709, 772
HpyCH4V TGCA 5 cut(s) 252, 635, 655, 698, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 722, 775
HpySE526I ACGT 2 cut(s) 709, 772
Hsp92I GRCGYC 2 cut(s) 452, 951
Hsp92II CATG 1 cut(s) 374
KroI GCCGGC 1 cut(s) 454
KroNI GCCGGC 1 cut(s) 456
Kzo9I GATC 3 cut(s) 373, 508, 890
LmnI GCTCC 2 cut(s) 322, 332
Lsp1109I GCAGC 6 cut(s) 337, 647, 667, 710, 725, 923
LweI GCATC 1 cut(s) 458
MaeI CTAG 2 cut(s) 33, 158
MaeII ACGT 2 cut(s) 709, 772
MaeIII GTNAC 3 cut(s) 134, 364, 901
MalI GATC 3 cut(s) 375, 510, 892
MboI GATC 3 cut(s) 373, 508, 890
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 2 cut(s) 273, 436
MlyI GAGTC 4 cut(s) 13, 23, 98, 532
MnlI CCTC 5 cut(s) 94, 550, 609, 631, 639
MroNI GCCGGC 1 cut(s) 454
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 1 cut(s) 971
MspA1I CMGCKG 1 cut(s) 328
MspR9I CCNGG 3 cut(s) 52, 290, 606
MvaI CCWGG 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 722, 775
NaeI GCCGGC 1 cut(s) 456
NciI CCSGG 2 cut(s) 52, 606
NdeI CATATG 1 cut(s) 338
NdeII GATC 3 cut(s) 373, 508, 890
NgoMIV GCCGGC 1 cut(s) 454
NlaIII CATG 1 cut(s) 374
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 364
NspV TTCGAA 1 cut(s) 433
PcsI WCGNNNNNNNCGW 1 cut(s) 957
PdiI GCCGGC 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 356
PinAI ACCGGT 1 cut(s) 803
PleI GAGTC 4 cut(s) 12, 22, 97, 531
PmaCI CACGTG 1 cut(s) 710
PmlI CACGTG 1 cut(s) 710
PpsI GAGTC 4 cut(s) 12, 22, 97, 531
Ppu21I YACGTR 1 cut(s) 710
Psp6I CCWGG 1 cut(s) 288
PspCI CACGTG 1 cut(s) 710
PspEI GGTNACC 1 cut(s) 134
PspFI CCCAGC 2 cut(s) 328, 668
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 704
PstI CTGCAG 2 cut(s) 637, 657
PsuI RGATCY 1 cut(s) 508
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 3 cut(s) 24, 921, 939
RsaNI GTAC 3 cut(s) 23, 920, 938
SaqAI TTAA 1 cut(s) 971
Sau3AI GATC 3 cut(s) 373, 508, 890
Sau96I GGNCC 1 cut(s) 704
ScaI AGTACT 1 cut(s) 921
SchI GAGTC 4 cut(s) 13, 23, 98, 532
ScrFI CCNGG 3 cut(s) 52, 290, 606
SduI GDGCHC 1 cut(s) 692
SfaNI GCATC 1 cut(s) 458
SfcI CTRYAG 5 cut(s) 633, 653, 897, 915, 933
SfuI TTCGAA 1 cut(s) 433
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 273, 436
SsiI CCGC 6 cut(s) 320, 492, 495, 536, 731, 930
SspMI CTAG 2 cut(s) 33, 158
StyD4I CCNGG 3 cut(s) 50, 288, 604
StyI CCWWGG 1 cut(s) 380
TaaI ACNGT 4 cut(s) 226, 901, 919, 937
TaiI ACGT 2 cut(s) 712, 775
TaqI TCGA 4 cut(s) 12, 433, 645, 960
TasI AATT 2 cut(s) 273, 436
TatI WGTACW 2 cut(s) 22, 919
TauI GCSGC 4 cut(s) 497, 539, 733, 932
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 1 cut(s) 971
Tru9I TTAA 1 cut(s) 971
TscAI CASTG 2 cut(s) 43, 369
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 6 cut(s) 325, 635, 655, 698, 713, 911
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 2 cut(s) 126, 348
TspRI CASTG 2 cut(s) 43, 369
XapI RAATTY 1 cut(s) 436
XbaI TCTAGA 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 2 cut(s) 33, 158
ZrmI AGTACT 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.