Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010500.1

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Reverse (-)

8668 .. 14703

Gene Structure 6036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010500.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgctcaaggaccttccggaggatttttacaagttgctctctgttaggactcttgttctttctggctgttcgagatttgagaatttgagcaaggatatagaaaatatgatttctttgaaaactcttgttataagtggcacaggcatcagtgaagtaccagcctctgtagataatgtgaggaacttggacttttcatctcgacaaggcctgagtggactaaaacgatgtgatgagacaccaagacctaggctgcgtttatggggggttataagcttcttaagatgtctcaaggatgagaacgctcaaacggtgactaatcaccacgccattcaaatctcatacactcttctagcagtggtgactttgccgggttgcttgggagaactagagaaagtttcttcagagtcatcaccagaggaagaaaatgaagaagataaagaagctgatggtgatggtgatggcagtgatgttgaagcagagttgaagagtgatgagagtgagcctgaaggagctcttgcaaatgttcttgaccttctgaagcgaatccacaagattttcttttatgaattgggaggcaatcttatatatagagacgtaaggcaggttctgaaaactgttaggaaggaagtcttgaaggggtgcaaagttgtgttcagccgtataattccttcaaaagtccaggctgataatcatcacccgtggaagagggcggagcagcaaattatatgtggcgaaagcaacctgaagacaagtttcctgtcactgaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

256

Amino Acids

28.64

Weight (kDa)

5.53

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	131, 269
Acc36I	ACCTGC	1 cut(s)	592
AccIII	TCCGGA	1 cut(s)	16
AciI	CCGC	1 cut(s)	710
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	4 cut(s)	384, 525, 557, 764
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	19
AflII	CTTAAG	1 cut(s)	277
AgsI	TTSAA	6 cut(s)	118, 332, 473, 484, 634, 672
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	3 cut(s)	273, 443, 512
AluI	AGCT	3 cut(s)	273, 443, 512
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	3 cut(s)	227, 290, 585
AlwNI	CAGNNNCTG	2 cut(s)	164, 607
Aor13HI	TCCGGA	1 cut(s)	16
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	250, 715
ApoI	RAATTY	1 cut(s)	82
AspA2I	CCTAGG	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	369
AsuHPI	GGTGA	7 cut(s)	311, 322, 370, 402, 461, 467, 686
AvaII	GGWCC	1 cut(s)	10
AvrII	CCTAGG	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	514
BarI	GAAGNNNNNNTAC	2 cut(s)	652, 684
BbsI	GAAGAC	1 cut(s)	752
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	2 cut(s)	237, 727
BccI	CCATC	3 cut(s)	440, 446, 452
BceAI	ACGGC	1 cut(s)	642
BciT130I	CCWGG	1 cut(s)	680
BcnI	CCSGG	1 cut(s)	369
BcoDI	GTCTC	3 cut(s)	227, 290, 585
BfaI	CTAG	3 cut(s)	246, 350, 386
BfmI	CTRYAG	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	277
BfuAI	ACCTGC	1 cut(s)	592
BisI	GCNGC	2 cut(s)	251, 716
BlnI	CCTAGG	1 cut(s)	245
BlsI	GCNGC	2 cut(s)	252, 717
Bme1390I	CCNGG	2 cut(s)	369, 680
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmrFI	CCNGG	2 cut(s)	369, 680
BmsI	GCATC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	752
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	369
BsaBI	GATNNNNATC	1 cut(s)	690
BsaJI	CCNNGG	2 cut(s)	245, 698
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse8I	GATNNNNATC	1 cut(s)	690
BseAI	TCCGGA	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	2 cut(s)	245, 698
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	690
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	237, 727
BshFI	GGCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	514
BsiSI	CCGG	2 cut(s)	17, 368
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	3 cut(s)	227, 290, 585
BsmBI	CGTCTC	1 cut(s)	585
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp13I	TCCGGA	1 cut(s)	16
BspACI	CCGC	1 cut(s)	710
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	1 cut(s)	201
BspEI	TCCGGA	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	592
BspTI	CTTAAG	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	245, 698
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	2 cut(s)	310, 616
Bst6I	CTCTTC	3 cut(s)	351, 479, 698
BstAFI	CTTAAG	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	209
BstDSI	CCRYGG	1 cut(s)	698
BstENI	CCTNNNNNAGG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	298
BstMAI	GTCTC	3 cut(s)	227, 290, 585
BstNI	CCWGG	1 cut(s)	680
BstSCI	CCNGG	2 cut(s)	367, 678
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	237, 727
BstV2I	GAAGAC	1 cut(s)	752
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	698
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	2 cut(s)	360, 469
BtsIMutI	CAGTG	4 cut(s)	154, 360, 469, 761
BveI	ACCTGC	1 cut(s)	592
CaiI	CAGNNNCTG	2 cut(s)	164, 607
Cfr13I	GGNCC	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	155
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	1 cut(s)	209
Eam1104I	CTCTTC	3 cut(s)	351, 479, 698
EarI	CTCTTC	3 cut(s)	351, 479, 698
EciI	GGCGGA	1 cut(s)	725
Ecl136II	GAGCTC	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	245
Eco147I	AGGCCT	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	4 cut(s)	384, 525, 557, 764
EcoICRI	GAGCTC	1 cut(s)	512
EcoNI	CCTNNNNNAGG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	678
EcoT14I	CCWWGG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	245
Esp3I	CGTCTC	1 cut(s)	585
FalI	AAGNNNNNCTT	6 cut(s)	498, 530, 542, 574, 614, 646
Fnu4HI	GCNGC	2 cut(s)	251, 716
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	2 cut(s)	251, 716
FspBI	CTAG	3 cut(s)	246, 350, 386
GluI	GCNGC	2 cut(s)	251, 716
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	17, 368
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	3 cut(s)	49, 404, 543
HpaII	CCGG	2 cut(s)	17, 368
HphI	GGTGA	7 cut(s)	311, 322, 370, 402, 461, 467, 686
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	403, 537, 609
Hpy188III	TCNNGA	5 cut(s)	17, 72, 198, 527, 631
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	6 cut(s)	23, 500, 542, 616, 628, 678
HpyCH4III	ACNGT	2 cut(s)	310, 616
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	2 cut(s)	518, 642
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	594
Kpn2I	TCCGGA	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	509, 712
Lsp1109I	GCAGC	2 cut(s)	237, 727
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	3 cut(s)	246, 350, 386
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	3 cut(s)	310, 358, 759
MboII	GAAGA	8 cut(s)	338, 390, 431, 440, 443, 496, 715, 757
MhlI	GDGCHC	1 cut(s)	514
MluCI	AATT	4 cut(s)	82, 566, 663, 720
MlyI	GAGTC	2 cut(s)	43, 413
MnlI	CCTC	6 cut(s)	13, 171, 172, 409, 566, 699
MroI	TCCGGA	1 cut(s)	16
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	766
MspCI	CTTAAG	1 cut(s)	277
MspI	CCGG	2 cut(s)	17, 368
MspR9I	CCNGG	2 cut(s)	369, 680
MvaI	CCWGG	1 cut(s)	680
NciI	CCSGG	1 cut(s)	369
NmuCI	GTSAC	3 cut(s)	310, 358, 759
PceI	AGGCCT	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	543
PkrI	GCNGC	2 cut(s)	252, 717
PleI	GAGTC	2 cut(s)	43, 412
PpsI	GAGTC	2 cut(s)	43, 412
PpuMI	RGGWCCY	1 cut(s)	10
PsiI	TTATAA	2 cut(s)	131, 269
Psp124BI	GAGCTC	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	678
PspPI	GGNCC	1 cut(s)	10
PspPPI	RGGWCCY	1 cut(s)	10
PsrI	GAACNNNNNNTAC	2 cut(s)	588, 620
PstNI	CAGNNNCTG	2 cut(s)	164, 607
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	766
SacI	GAGCTC	1 cut(s)	514
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	2 cut(s)	251, 716
Sau96I	GGNCC	1 cut(s)	10
SchI	GAGTC	2 cut(s)	43, 413
ScrFI	CCNGG	2 cut(s)	369, 680
SduI	GDGCHC	1 cut(s)	514
SetI	ASST	9 cut(s)	15, 247, 275, 445, 514, 534, 597, 606, 744
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	766
SmlI	CTYRAG	3 cut(s)	5, 277, 287
SmoI	CTYRAG	3 cut(s)	5, 277, 287
Sse9I	AATT	4 cut(s)	82, 566, 663, 720
SseBI	AGGCCT	1 cut(s)	207
SsiI	CCGC	1 cut(s)	710
SspMI	CTAG	3 cut(s)	246, 350, 386
SstI	GAGCTC	1 cut(s)	514
StuI	AGGCCT	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	367, 678
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	310, 616
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	2 cut(s)	71, 199
TasI	AATT	4 cut(s)	82, 566, 663, 720
TfiI	GAWTC	1 cut(s)	543
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	4 cut(s)	154, 360, 469, 768
TseFI	GTSAC	3 cut(s)	310, 358, 759
TseI	GCWGC	2 cut(s)	250, 715
Tsp45I	GTSAC	3 cut(s)	310, 358, 759
TspDTI	ATGAA	3 cut(s)	183, 441, 579
TspRI	CASTG	4 cut(s)	154, 360, 469, 768
Vha464I	CTTAAG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	10
XagI	CCTNNNNNAGG	1 cut(s)	17
XapI	RAATTY	1 cut(s)	82
XmaJI	CCTAGG	1 cut(s)	245
XspI	CTAG	3 cut(s)	246, 350, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.