Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Reverse (-)

9223771 .. 9224908

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG058300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGATGAGTGTGGCTACCGTCTCTCCAATTTTGCACAACATAGATAACCTTGTTGGGTTTCTCAAGAGAGGACGAGGACAACAGGATTCTGATTACAGTCAACTAGAATTGATAGAGAGGAGAAAAAGGCGTAACATAATAGAGACGACTACTAATGAAGAAGCAAGATTTGCAGATGAGGAGCAATCCGGGTCTTCTGGAGTGAGATTTGGGTACTTACACAAGGGCTTAGGGCTTAATCATGATGAAATTGATCGTTTACGAAACGATAACACTAATATCTTATTGTTGCACCATAAGAAACTTCATTTAGTACTTGACCTAGACCACACCCTGCTGAATTCCACTTTCCTTGATAATATGTCACCAGACGAACAATATTTGAAGACTCAAACCCAATCTGATCATTCTCTGCAACATGTTCACATTGTGAACACTCCCGGTACGCAATTGATGACCAAGTTCAGGCCTTATATTATGACATTTTTAATGCAAGCTAGTCAAATGTTTGAGCTGTCCATTTACACCACGGGTAGTCGAGACTATGCGCTCGAAATGGCTAAGTTGCTTGATCCCAGAAATCAAATCTTTGGTGGTAGAGTGATCTCACGTAGCGAGAGCACAAAAGAAGATCGAAAGGGTCTAGATGCCCTGCTTGCCCGAGATTCTGCTGTTTTGATCCTTGATGATACAAAAGATGTATGGACAGTTGACAACCAGTATAATGTAATAATAATGCCAAGATACCATTTCTTTAGATCTAGTTGTCAACAATTTGGCCTCAGTAGTAAGCCTTATTCCGAGTTAAAGACTGATGAATGTGATCGGTATGGAGGAGCTTATCTTGCAAATGTGCTTCAACTTCTTAGGCACGTTCACAGCATCTTCTTTAATGAAGTCGAGATACAGGGTTGGGATCTTATCGACAGAGACGTGAGGCTTGTGTTGAAAATCCTTCAGAAGGAAGTCTTGAAGGGCTGTAAAATTGTTTTCAGCCATGTTTTCCCTTCAAATGTCAAATGTACAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

343

Amino Acids

39.51

Weight (kDa)

6.54

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	103 - 250	5.5e-24	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	566, 673, 924
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	941
AdeI	CACNNNGTG	1 cut(s)	430
AfaI	GTAC	4 cut(s)	215, 315, 445, 1024
AfiI	CCNNNNNNNGG	2 cut(s)	465, 961
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	5 cut(s)	385, 860, 949, 973, 1011
AjiI	CACGTC	1 cut(s)	934
AluBI	AGCT	3 cut(s)	497, 514, 839
AluI	AGCT	3 cut(s)	497, 514, 839
Alw21I	GWGCWC	1 cut(s)	623
Alw26I	GTCTC	4 cut(s)	25, 137, 534, 924
AlwI	GGATC	3 cut(s)	566, 673, 924
Ama87I	CYCGRG	1 cut(s)	660
AoxI	GGCC	2 cut(s)	467, 778
ApoI	RAATTY	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	550
AsuC2I	CCSGG	2 cut(s)	190, 441
AsuHPI	GGTGA	1 cut(s)	357
AvaI	CYCGRG	1 cut(s)	660
BarI	GAAGNNNNNNTAC	2 cut(s)	888, 920
BbsI	GAAGAC	2 cut(s)	186, 392
Bbv12I	GWGCWC	1 cut(s)	623
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	2 cut(s)	190, 441
BcoDI	GTCTC	4 cut(s)	25, 137, 534, 924
BfaI	CTAG	5 cut(s)	104, 323, 498, 644, 762
BglII	AGATCT	1 cut(s)	758
BmcAI	AGTACT	1 cut(s)	315
Bme1390I	CCNGG	2 cut(s)	190, 441
BmeT110I	CYCGRG	1 cut(s)	660
BmgBI	CACGTC	1 cut(s)	934
BmrFI	CCNGG	2 cut(s)	190, 441
BmsI	GCATC	2 cut(s)	637, 891
BpiI	GAAGAC	2 cut(s)	186, 392
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	2 cut(s)	190, 441
BsaAI	YACGTR	1 cut(s)	611
BsaJI	CCNNGG	1 cut(s)	528
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 961
Bse1I	ACTGG	1 cut(s)	718
BseDI	CCNNGG	1 cut(s)	528
BseLI	CCNNNNNNNGG	2 cut(s)	465, 961
BseMII	CTCAG	1 cut(s)	796
BseNI	ACTGG	1 cut(s)	718
BseRI	GAGGAG	3 cut(s)	133, 194, 849
BshFI	GGCC	2 cut(s)	469, 780
BsiHKAI	GWGCWC	1 cut(s)	623
BsiHKCI	CYCGRG	1 cut(s)	660
BsiSI	CCGG	2 cut(s)	189, 441
BslI	CCNNNNNNNGG	2 cut(s)	465, 961
BsmAI	GTCTC	4 cut(s)	25, 137, 534, 924
BsmBI	CGTCTC	3 cut(s)	25, 137, 924
BsnI	GGCC	2 cut(s)	469, 780
BsoBI	CYCGRG	1 cut(s)	660
Bsp1286I	GDGCHC	1 cut(s)	623
Bsp1407I	TGTACA	1 cut(s)	1022
Bsp143I	GATC	9 cut(s)	253, 403, 571, 603, 631, 678, 758, 823, 916
BspANI	GGCC	2 cut(s)	469, 780
BspCNI	CTCAG	1 cut(s)	795
BspHI	TCATGA	1 cut(s)	241
BspPI	GGATC	3 cut(s)	566, 673, 924
BsrGI	TGTACA	1 cut(s)	1022
BsrI	ACTGG	1 cut(s)	718
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	9 cut(s)	253, 403, 571, 603, 631, 678, 758, 823, 916
Bst4CI	ACNGT	3 cut(s)	19, 98, 709
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	1022
BstBAI	YACGTR	1 cut(s)	611
BstC8I	GCNNGC	2 cut(s)	495, 657
BstDEI	CTNAG	4 cut(s)	229, 561, 782, 866
BstDSI	CCRYGG	1 cut(s)	528
BstENI	CCTNNNNNAGG	1 cut(s)	959
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	9 cut(s)	256, 406, 574, 606, 634, 681, 761, 826, 919
BstMAI	GTCTC	4 cut(s)	25, 137, 534, 924
BstMBI	GATC	9 cut(s)	253, 403, 571, 603, 631, 678, 758, 823, 916
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 656, 845
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	2 cut(s)	188, 439
BstV2I	GAAGAC	2 cut(s)	186, 392
BstX2I	RGATCY	2 cut(s)	758, 916
BstYI	RGATCY	2 cut(s)	758, 916
BsuRI	GGCC	2 cut(s)	469, 780
BtgI	CCRYGG	1 cut(s)	528
BtrI	CACGTC	1 cut(s)	934
Cac8I	GCNNGC	2 cut(s)	495, 657
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	550
Csp6I	GTAC	4 cut(s)	214, 314, 444, 1023
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	3 cut(s)	242, 419, 998
CviQI	GTAC	4 cut(s)	214, 314, 444, 1023
DdeI	CTNAG	4 cut(s)	229, 561, 782, 866
DpnI	GATC	9 cut(s)	255, 405, 573, 605, 633, 680, 760, 825, 918
DpnII	GATC	9 cut(s)	253, 403, 571, 603, 631, 678, 758, 823, 916
DraIII	CACNNNGTG	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	941
Eco88I	CYCGRG	1 cut(s)	660
EcoNI	CCTNNNNNAGG	1 cut(s)	959
EcoRI	GAATTC	1 cut(s)	340
Esp3I	CGTCTC	3 cut(s)	25, 137, 924
FaeI	CATG	3 cut(s)	245, 422, 1001
FalI	AAGNNNNNCTT	2 cut(s)	953, 985
FatI	CATG	3 cut(s)	241, 418, 997
FbaI	TGATCA	1 cut(s)	403
FspBI	CTAG	5 cut(s)	104, 323, 498, 644, 762
GlaI	GCGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	469, 780
HapII	CCGG	2 cut(s)	189, 441
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	3 cut(s)	245, 422, 1001
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	3 cut(s)	101, 712, 770
HindII	GTYRAC	3 cut(s)	101, 712, 770
HinfI	GANTC	3 cut(s)	86, 388, 665
HpaII	CCGG	2 cut(s)	189, 441
HphI	GGTGA	1 cut(s)	357
Hpy166II	GTNNAC	7 cut(s)	101, 260, 424, 433, 712, 770, 877
Hpy188I	TCNGA	4 cut(s)	91, 403, 802, 960
Hpy188III	TCNNGA	7 cut(s)	64, 198, 242, 539, 644, 901, 970
Hpy8I	GTNNAC	7 cut(s)	101, 260, 424, 433, 712, 770, 877
HpyAV	CCTTC	4 cut(s)	955, 965, 967, 1017
HpyCH4III	ACNGT	3 cut(s)	19, 98, 709
HpyCH4IV	ACGT	3 cut(s)	610, 873, 933
HpyCH4V	TGCA	6 cut(s)	34, 173, 292, 415, 493, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 656, 845
HpyF3I	CTNAG	4 cut(s)	229, 561, 782, 866
HpySE526I	ACGT	3 cut(s)	610, 873, 933
Hsp92II	CATG	3 cut(s)	245, 422, 1001
HspAI	GCGC	1 cut(s)	548
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	9 cut(s)	253, 403, 571, 603, 631, 678, 758, 823, 916
LmnI	GCTCC	2 cut(s)	181, 836
LweI	GCATC	2 cut(s)	637, 891
MaeI	CTAG	5 cut(s)	104, 323, 498, 644, 762
MaeII	ACGT	3 cut(s)	610, 873, 933
MaeIII	GTNAC	2 cut(s)	131, 363
MalI	GATC	9 cut(s)	255, 405, 573, 605, 633, 680, 760, 825, 918
MboI	GATC	9 cut(s)	253, 403, 571, 603, 631, 678, 758, 823, 916
MboII	GAAGA	5 cut(s)	170, 186, 397, 641, 877
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	2 cut(s)	758, 916
MhlI	GDGCHC	1 cut(s)	623
MluCI	AATT	7 cut(s)	27, 107, 249, 340, 449, 773, 984
MlyI	GAGTC	1 cut(s)	382
MnlI	CCTC	7 cut(s)	62, 68, 111, 172, 791, 827, 930
MseI	TTAA	4 cut(s)	237, 488, 806, 891
MspI	CCGG	2 cut(s)	189, 441
MspR9I	CCNGG	2 cut(s)	190, 441
MunI	CAATTG	1 cut(s)	449
MwoI	GCNNNNNNNGC	3 cut(s)	170, 656, 845
NciI	CCSGG	2 cut(s)	190, 441
NdeII	GATC	9 cut(s)	253, 403, 571, 603, 631, 678, 758, 823, 916
NlaIII	CATG	3 cut(s)	245, 422, 1001
NmuCI	GTSAC	1 cut(s)	363
NspI	RCATGY	1 cut(s)	422
PagI	TCATGA	1 cut(s)	241
PceI	AGGCCT	1 cut(s)	469
PciI	ACATGT	1 cut(s)	418
PcsI	WCGNNNNNNNCGW	1 cut(s)	930
PfeI	GAWTC	2 cut(s)	86, 665
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
Ppu21I	YACGTR	1 cut(s)	611
PscI	ACATGT	1 cut(s)	418
PsuI	RGATCY	2 cut(s)	758, 916
RsaI	GTAC	4 cut(s)	215, 315, 445, 1024
RsaNI	GTAC	4 cut(s)	214, 314, 444, 1023
SaqAI	TTAA	4 cut(s)	237, 488, 806, 891
Sau3AI	GATC	9 cut(s)	253, 403, 571, 603, 631, 678, 758, 823, 916
ScaI	AGTACT	1 cut(s)	315
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	2 cut(s)	190, 441
SduI	GDGCHC	1 cut(s)	623
SetI	ASST	8 cut(s)	51, 324, 499, 516, 613, 841, 876, 936
SfaNI	GCATC	2 cut(s)	637, 891
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	7 cut(s)	27, 107, 249, 340, 449, 773, 984
SseBI	AGGCCT	1 cut(s)	469
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	5 cut(s)	104, 323, 498, 644, 762
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	2 cut(s)	188, 439
TaaI	ACNGT	3 cut(s)	19, 98, 709
TaiI	ACGT	3 cut(s)	613, 876, 936
TaqI	TCGA	5 cut(s)	538, 552, 634, 900, 924
TasI	AATT	7 cut(s)	27, 107, 249, 340, 449, 773, 984
TatI	WGTACW	2 cut(s)	313, 1022
TfiI	GAWTC	2 cut(s)	86, 665
Tru1I	TTAA	4 cut(s)	237, 488, 806, 891
Tru9I	TTAA	4 cut(s)	237, 488, 806, 891
TseFI	GTSAC	1 cut(s)	363
Tsp45I	GTSAC	1 cut(s)	363
TspDTI	ATGAA	5 cut(s)	171, 261, 296, 831, 909
XagI	CCTNNNNNAGG	1 cut(s)	959
XapI	RAATTY	1 cut(s)	340
XbaI	TCTAGA	1 cut(s)	643
XceI	RCATGY	1 cut(s)	422
XspI	CTAG	5 cut(s)	104, 323, 498, 644, 762
ZrmI	AGTACT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.