Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

11548830 .. 11549774

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCACCCGAAGAAGAATATCTGAAGACCCAAACCCAGTCTGATCATTCTCTGCAGTATGTTCACGTTGTTGACACTCCCAGTAGGCAATTGATGACCAAGTTGAGGCCTTATATTAGGACGTTTTTAGTGCAAGCCAGTCAAATGTTTGAGCTGTCCATATACACAATGGGTAATCGAGATTATGCGCTAGAAATGGCCAAGCTGCTTGATCCAGGAAATCTTATCTTTGGTGGTAGAGTCATGTCGCGTGATGATAGCCCAGAAACAAATAGAAAGAGTCTAGATGTCCTGCTTGCCCGAGATTCTGCTGTTGTGATCCTTGATGATAGGAAAAATGTATGGACAAATGACAACAGGGACAATGTAATAGTGATGCCTAGGTATCATTTCTTTAGATCTAGTTATCAAAAGTCTGGCCTCAGTAAGGGTAAGCCTTATTCTGAGTTGAAGACTGATGAATGTGATCGTTATGGAGGAGCTTATCTTGCAAATGTACTTCAACTTCTTGGATATATTCACACCATATTCTTTAATGAAGTTGAGATACAGGGGTGGGATCTTATGTACAGAGATGTGAGGCTTGTCTTGAAAATCCTGAAGAAGGAAGTCTTGAAAGGCTGTAAAATTGTTTTCAGCCATGTATTCCCCTCAAATGTCGAAGCTAATACTCATCCTTTGTGGAAGATGGCGGAGCAGCTGGGCGCTACTTGTTCAACACAAGTCGATCCATCAGTCACGCATGTAGTTGCAGCAAATGCTCGAACACAGAAATCGTGTTGGGCAGTTAAAGAAGGAAAGTTTTTGGTGAATCCCCAATGGATTCATTCTGCAAATTTTATGTGGCAAAAGCAACCTGAAGATAATTTTCCCTGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

293

Amino Acids

33.8

Weight (kDa)

8.18

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	17 - 148	9.2e-19	NLI interacting factor-like phosphatase
BRCT	PF00533	203 - 275	1.7e-09	BRCA1 C Terminus (BRCT) domain
PTCB-BRCT	PF12738	224 - 274	1.3e-06	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	250
AciI	CCGC	1 cut(s)	692
AclWI	GGATC	4 cut(s)	206, 313, 567, 722
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	835
AcuI	CTGAAG	3 cut(s)	44, 620, 879
AfaI	GTAC	2 cut(s)	498, 569
AfiI	CCNNNNNNNGG	3 cut(s)	105, 427, 604
AgsI	TTSAA	5 cut(s)	451, 503, 592, 616, 717
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	5 cut(s)	154, 205, 482, 665, 700
AluI	AGCT	5 cut(s)	154, 205, 482, 665, 700
AlwI	GGATC	4 cut(s)	206, 313, 567, 722
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	3 cut(s)	107, 198, 418
ApeKI	GCWGC	3 cut(s)	205, 697, 752
ApoI	RAATTY	1 cut(s)	835
AspA2I	CCTAGG	1 cut(s)	380
AspLEI	GCGC	2 cut(s)	190, 707
AsuHPI	GGTGA	1 cut(s)	820
AvaI	CYCGRG	1 cut(s)	300
AvrII	CCTAGG	1 cut(s)	380
BaeI	ACNNNNGTAYC	2 cut(s)	539, 572
BalI	TGGCCA	1 cut(s)	200
BarI	GAAGNNNNNNTAC	4 cut(s)	489, 521, 531, 563
BbsI	GAAGAC	2 cut(s)	32, 458
BbvI	GCAGC	3 cut(s)	192, 709, 764
BccI	CCATC	2 cut(s)	682, 739
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	1 cut(s)	43
BfaI	CTAG	4 cut(s)	191, 284, 381, 402
BfmI	CTRYAG	1 cut(s)	53
BfoI	RGCGCY	1 cut(s)	708
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	3 cut(s)	206, 698, 753
BlnI	CCTAGG	1 cut(s)	380
BlsI	GCNGC	3 cut(s)	207, 699, 754
Bme1390I	CCNGG	1 cut(s)	216
BmeT110I	CYCGRG	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	216
BmrI	ACTGGG	2 cut(s)	31, 75
BmsI	GCATC	1 cut(s)	366
BmuI	ACTGGG	2 cut(s)	31, 75
BpiI	GAAGAC	2 cut(s)	32, 458
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 427, 604
Bse1I	ACTGG	3 cut(s)	37, 81, 138
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	3 cut(s)	105, 427, 604
BseMII	CTCAG	2 cut(s)	435, 436
BseNI	ACTGG	3 cut(s)	37, 81, 138
BseRI	GAGGAG	1 cut(s)	492
BseXI	GCAGC	3 cut(s)	192, 709, 764
BseYI	CCCAGC	1 cut(s)	700
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	3 cut(s)	109, 200, 420
BsiHKCI	CYCGRG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	3 cut(s)	105, 427, 604
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	3 cut(s)	109, 200, 420
BsoBI	CYCGRG	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	7 cut(s)	43, 211, 318, 398, 466, 559, 727
BspACI	CCGC	1 cut(s)	692
BspANI	GGCC	3 cut(s)	109, 200, 420
BspCNI	CTCAG	2 cut(s)	435, 436
BspFNI	CGCG	1 cut(s)	250
BspMAI	CTGCAG	1 cut(s)	57
BspPI	GGATC	4 cut(s)	206, 313, 567, 722
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	3 cut(s)	37, 81, 138
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	7 cut(s)	43, 211, 318, 398, 466, 559, 727
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstAUI	TGTACA	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	135, 297
BstDEI	CTNAG	2 cut(s)	422, 444
BstENI	CCTNNNNNAGG	2 cut(s)	425, 602
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	708
BstHHI	GCGC	2 cut(s)	190, 707
BstKTI	GATC	7 cut(s)	46, 214, 321, 401, 469, 562, 730
BstMBI	GATC	7 cut(s)	43, 211, 318, 398, 466, 559, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 758
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	746
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	53
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	3 cut(s)	192, 709, 764
BstV2I	GAAGAC	2 cut(s)	32, 458
BstX2I	RGATCY	2 cut(s)	398, 559
BstYI	RGATCY	2 cut(s)	398, 559
BsuRI	GGCC	3 cut(s)	109, 200, 420
BtsCI	GGATG	1 cut(s)	673
Cac8I	GCNNGC	2 cut(s)	135, 297
CfoI	GCGC	2 cut(s)	190, 707
Csp6I	GTAC	2 cut(s)	497, 568
CviAII	CATG	3 cut(s)	244, 641, 743
CviQI	GTAC	2 cut(s)	497, 568
DdeI	CTNAG	2 cut(s)	422, 444
DpnI	GATC	7 cut(s)	45, 213, 320, 400, 468, 561, 729
DpnII	GATC	7 cut(s)	43, 211, 318, 398, 466, 559, 727
EaeI	YGGCCR	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	707
Eco130I	CCWWGG	1 cut(s)	380
Eco147I	AGGCCT	1 cut(s)	109
Eco57I	CTGAAG	3 cut(s)	44, 620, 879
Eco88I	CYCGRG	1 cut(s)	300
EcoNI	CCTNNNNNAGG	2 cut(s)	425, 602
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	3 cut(s)	247, 644, 746
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	3 cut(s)	243, 640, 742
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	206, 698, 753
FokI	GGATG	1 cut(s)	660
Fsp4HI	GCNGC	3 cut(s)	206, 698, 753
FspBI	CTAG	4 cut(s)	191, 284, 381, 402
GlaI	GCGC	2 cut(s)	189, 706
GluI	GCNGC	3 cut(s)	206, 698, 753
GsaI	CCCAGC	1 cut(s)	704
HaeII	RGCGCY	1 cut(s)	708
HaeIII	GGCC	3 cut(s)	109, 200, 420
HhaI	GCGC	2 cut(s)	190, 707
Hin1II	CATG	3 cut(s)	247, 644, 746
Hin6I	GCGC	2 cut(s)	188, 705
HinP1I	GCGC	2 cut(s)	188, 705
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	5 cut(s)	240, 280, 305, 811, 823
HphI	GGTGA	1 cut(s)	820
Hpy166II	GTNNAC	2 cut(s)	64, 73
Hpy188I	TCNGA	3 cut(s)	24, 43, 445
Hpy188III	TCNNGA	5 cut(s)	179, 284, 589, 598, 613
Hpy8I	GTNNAC	2 cut(s)	64, 73
HpyAV	CCTTC	2 cut(s)	598, 788
HpyCH4IV	ACGT	2 cut(s)	66, 122
HpyCH4V	TGCA	5 cut(s)	55, 133, 491, 752, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 758
HpyF3I	CTNAG	2 cut(s)	422, 444
HpySE526I	ACGT	2 cut(s)	66, 122
Hsp92II	CATG	3 cut(s)	247, 644, 746
HspAI	GCGC	2 cut(s)	188, 705
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	7 cut(s)	43, 211, 318, 398, 466, 559, 727
LmnI	GCTCC	2 cut(s)	479, 694
Lsp1109I	GCAGC	3 cut(s)	192, 709, 764
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	4 cut(s)	191, 284, 381, 402
MaeII	ACGT	2 cut(s)	66, 122
MaeIII	GTNAC	2 cut(s)	3, 736
MalI	GATC	7 cut(s)	45, 213, 320, 400, 468, 561, 729
MboI	GATC	7 cut(s)	43, 211, 318, 398, 466, 559, 727
MboII	GAAGA	7 cut(s)	23, 26, 37, 463, 613, 697, 872
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	2 cut(s)	398, 559
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	4 cut(s)	89, 627, 835, 865
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	249, 289
MnlI	CCTC	5 cut(s)	99, 431, 470, 573, 661
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	2 cut(s)	534, 789
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	700
MspR9I	CCNGG	1 cut(s)	216
MunI	CAATTG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	2 cut(s)	488, 758
NdeII	GATC	7 cut(s)	43, 211, 318, 398, 466, 559, 727
NlaIII	CATG	3 cut(s)	247, 644, 746
NmuCI	GTSAC	2 cut(s)	3, 736
NspI	RCATGY	1 cut(s)	746
PceI	AGGCCT	1 cut(s)	109
PfeI	GAWTC	3 cut(s)	305, 811, 823
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	3 cut(s)	207, 699, 754
PleI	GAGTC	2 cut(s)	248, 288
PpsI	GAGTC	2 cut(s)	248, 288
Psp6I	CCWGG	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	57
PsuI	RGATCY	2 cut(s)	398, 559
PvuII	CAGCTG	1 cut(s)	700
RsaI	GTAC	2 cut(s)	498, 569
RsaNI	GTAC	2 cut(s)	497, 568
SaqAI	TTAA	2 cut(s)	534, 789
SatI	GCNGC	3 cut(s)	206, 698, 753
Sau3AI	GATC	7 cut(s)	43, 211, 318, 398, 466, 559, 727
SchI	GAGTC	2 cut(s)	249, 289
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	9 cut(s)	69, 125, 156, 207, 386, 484, 667, 702, 859
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	53
Sse9I	AATT	4 cut(s)	89, 627, 835, 865
SseBI	AGGCCT	1 cut(s)	109
SsiI	CCGC	1 cut(s)	692
SspMI	CTAG	4 cut(s)	191, 284, 381, 402
StuI	AGGCCT	1 cut(s)	109
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	380
TaiI	ACGT	2 cut(s)	69, 125
TaqI	TCGA	4 cut(s)	178, 660, 726, 763
TasI	AATT	4 cut(s)	89, 627, 835, 865
TatI	WGTACW	2 cut(s)	496, 567
TfiI	GAWTC	3 cut(s)	305, 811, 823
Tru1I	TTAA	2 cut(s)	534, 789
Tru9I	TTAA	2 cut(s)	534, 789
TseFI	GTSAC	2 cut(s)	3, 736
TseI	GCWGC	3 cut(s)	205, 697, 752
Tsp45I	GTSAC	2 cut(s)	3, 736
TspDTI	ATGAA	3 cut(s)	474, 552, 815
XagI	CCTNNNNNAGG	2 cut(s)	425, 602
XapI	RAATTY	1 cut(s)	835
XbaI	TCTAGA	1 cut(s)	283
XceI	RCATGY	1 cut(s)	746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmaJI	CCTAGG	1 cut(s)	380
XspI	CTAG	4 cut(s)	191, 284, 381, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.