Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

55320052 .. 55323199

Gene Structure 3148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGATGAGAACGCTCAAACGGTGACTAATCATCACGCCATTCGAATCTCAATGAGTCTGACCGAGTCTCCAGTACACTCTTCTAGCAGTGATGACTTTGCCGGGTTGCTTGAGAGAGAACTAAAGTCCAGTTCTTCAGAGTCATCACCAGAGGAAGAAGATGAAGATGATAAAAAAGCTGATGGTGATGGTGACGGCAGTGATGTTGAAACTTTTCTGGCAATTATGTGCAGAAGCATCGGCAACGGAGGATATGTGTGCACGTACTCGGTCATTTGGAGACATGAGTTTTCGTTGTGGCCAGAGGTGATTGAGCAGTCTGGTGTGACATTTGGGTACATACACAAGGGATTGAGACTTAATAATGATGAAATCGACCGGTTACGCAACACAGACATTAAGAAATCGCTAAATAATAAGAAACTTGATTTGGTACTGGATCTTGATCATACACTGCTAAATTCCACCCAGCTGAATCATATGACGGCAGAAGAAGAATATTTGATGAGCCCACCAGATTCGCTGCCAGGTGCATGCTTGTATATTTACCCAAAGGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

187

Amino Acids

21.0

Weight (kDa)

4.53

Isoelectric Point (pI)

63.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	447
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	4 cut(s)	75, 266, 338, 435
AgeI	ACCGGT	1 cut(s)	378
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AluBI	AGCT	2 cut(s)	179, 472
AluI	AGCT	2 cut(s)	179, 472
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	3 cut(s)	72, 274, 349
Alw44I	GTGCAC	1 cut(s)	259
AlwI	GGATC	1 cut(s)	447
AoxI	GGCC	1 cut(s)	299
ApaLI	GTGCAC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	523
ApoI	RAATTY	1 cut(s)	460
AsiGI	ACCGGT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	5 cut(s)	34, 138, 197, 203, 319
AsuII	TTCGAA	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	2 cut(s)	176, 182
BceAI	ACGGC	2 cut(s)	211, 501
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	528
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	3 cut(s)	72, 274, 349
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
Bme1390I	CCNGG	2 cut(s)	103, 528
BmrFI	CCNGG	2 cut(s)	103, 528
BmsI	GCATC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	444
BsaWI	WCCGGW	1 cut(s)	378
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 82, 240, 270
Bse118I	RCCGGY	1 cut(s)	378
Bse1I	ACTGG	3 cut(s)	71, 129, 441
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	528
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	444
BseNI	ACTGG	3 cut(s)	71, 129, 441
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	510
BseYI	CCCAGC	1 cut(s)	468
BsgI	GTGCAG	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	1 cut(s)	301
BshTI	ACCGGT	1 cut(s)	378
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	102, 379
BsmAI	GTCTC	3 cut(s)	72, 274, 349
BsnI	GGCC	1 cut(s)	301
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	263, 512
Bsp143I	GATC	2 cut(s)	439, 445
BspANI	GGCC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	447
BspT104I	TTCGAA	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	378
BsrI	ACTGG	3 cut(s)	71, 129, 441
BssAI	RCCGGY	1 cut(s)	378
BssMI	GATC	2 cut(s)	439, 445
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	264
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	535
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	442, 448
BstMAI	GTCTC	3 cut(s)	72, 274, 349
BstMBI	GATC	2 cut(s)	439, 445
BstMCI	CGRYCG	1 cut(s)	379
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	2 cut(s)	101, 526
BstSLI	GKGCMC	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	3 cut(s)	94, 205, 452
BtsIMutI	CAGTG	3 cut(s)	94, 205, 452
Cac8I	GCNNGC	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	378
Csp6I	GTAC	4 cut(s)	74, 265, 337, 434
CspAI	ACCGGT	1 cut(s)	378
CviAII	CATG	2 cut(s)	284, 534
CviJI	RGCY	4 cut(s)	179, 301, 472, 510
CviKI_1	RGCY	4 cut(s)	179, 301, 472, 510
CviQI	GTAC	4 cut(s)	74, 265, 337, 434
DpnI	GATC	2 cut(s)	441, 447
DpnII	GATC	2 cut(s)	439, 445
EaeI	YGGCCR	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	512
FaeI	CATG	2 cut(s)	287, 537
FaiI	YATR	9 cut(s)	227, 255, 285, 341, 450, 480, 482, 535, 543
FatI	CATG	2 cut(s)	283, 533
FauNDI	CATATG	1 cut(s)	480
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	524
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	1 cut(s)	524
GsaI	CCCAGC	1 cut(s)	472
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	2 cut(s)	102, 379
Hin1II	CATG	2 cut(s)	287, 537
HinfI	GANTC	6 cut(s)	45, 55, 65, 140, 475, 518
HpaII	CCGG	2 cut(s)	102, 379
HphI	GGTGA	5 cut(s)	34, 138, 197, 203, 319
Hpy166II	GTNNAC	2 cut(s)	76, 261
Hpy188I	TCNGA	2 cut(s)	60, 139
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	2 cut(s)	76, 261
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	3 cut(s)	231, 261, 533
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	287, 537
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	439, 445
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	4 cut(s)	22, 191, 325, 381
MalI	GATC	2 cut(s)	441, 447
MboI	GATC	2 cut(s)	439, 445
MboII	GAAGA	7 cut(s)	72, 126, 167, 170, 176, 503, 506
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	2 cut(s)	263, 512
MlsI	TGGCCA	1 cut(s)	301
MluCI	AATT	2 cut(s)	222, 460
MluNI	TGGCCA	1 cut(s)	301
MlyI	GAGTC	3 cut(s)	64, 74, 149
MnlI	CCTC	3 cut(s)	145, 242, 298
Mox20I	TGGCCA	1 cut(s)	301
MroXI	GAANNNNTTC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	301
MseI	TTAA	2 cut(s)	360, 399
Msp20I	TGGCCA	1 cut(s)	301
MspA1I	CMGCKG	1 cut(s)	472
MspI	CCGG	2 cut(s)	102, 379
MspR9I	CCNGG	2 cut(s)	103, 528
MvaI	CCWGG	1 cut(s)	528
NciI	CCSGG	1 cut(s)	103
NdeI	CATATG	1 cut(s)	480
NdeII	GATC	2 cut(s)	439, 445
NlaIII	CATG	2 cut(s)	287, 537
NmuCI	GTSAC	3 cut(s)	22, 191, 325
NspI	RCATGY	1 cut(s)	537
NspV	TTCGAA	1 cut(s)	43
PaeI	GCATGC	1 cut(s)	537
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	45, 475, 518
PflFI	GACNNNGTC	1 cut(s)	64
PinAI	ACCGGT	1 cut(s)	378
PkrI	GCNGC	1 cut(s)	525
PleI	GAGTC	3 cut(s)	63, 73, 148
PpsI	GAGTC	3 cut(s)	63, 73, 148
Ppu21I	YACGTR	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	439
PsyI	GACNNNGTC	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	472
RsaI	GTAC	4 cut(s)	75, 266, 338, 435
RsaNI	GTAC	4 cut(s)	74, 265, 337, 434
SaqAI	TTAA	2 cut(s)	360, 399
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	2 cut(s)	439, 445
SchI	GAGTC	3 cut(s)	64, 74, 149
ScrFI	CCNGG	2 cut(s)	103, 528
SduI	GDGCHC	2 cut(s)	263, 512
SetI	ASST	5 cut(s)	181, 266, 309, 474, 532
SfaNI	GCATC	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	537
Sse9I	AATT	2 cut(s)	222, 460
SspI	AATATT	1 cut(s)	500
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	101, 526
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	2 cut(s)	43, 375
TaqII	GACCGA	2 cut(s)	77, 259
TasI	AATT	2 cut(s)	222, 460
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	3 cut(s)	45, 475, 518
Tru1I	TTAA	2 cut(s)	360, 399
Tru9I	TTAA	2 cut(s)	360, 399
TscAI	CASTG	3 cut(s)	94, 205, 459
TseFI	GTSAC	3 cut(s)	22, 191, 325
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	3 cut(s)	22, 191, 325
TspDTI	ATGAA	2 cut(s)	177, 384
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	3 cut(s)	94, 205, 459
Tth111I	GACNNNGTC	1 cut(s)	64
VneI	GTGCAC	1 cut(s)	259
XapI	RAATTY	1 cut(s)	460
XceI	RCATGY	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.