Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

2942553 .. 2943853

Gene Structure 1301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02631.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGATGAGTTTGGCGACCGTGTCTCCGACTCCGATCGACAACCTTGTTGGGTGTCGCAAGAGGAACCGAGGTTTGGTTTCTGACCTGGGTTTCATACATGACAAGACAAAGAGGCCCAAGACAGAAACCGATCTGGAAATTCAACAAGATGCAAGATTTTCTGGTGATGAAATTTTCAGGTCTTCTGGTGGATTGAGATTTGGTTACATTACCAAGGATTTGGGGCTTAGTGATGACGTAATCGGTCGATTACGCAACGAAAACACTAGAAACCTATTGGTGAAGCATAAGAAACTTCATTTGGTTCTCGATCTCGACCACACCCTGCTGAATACCACTCACCTTGACAAGATGTCACCGGAAGAAGAATATCTGAAGGCTGATCATTCTCTGCAGGATGTTCACATTGTGGAAGGTCAAGTGATGACCAAGCTGAGGCCACAAGTTAGGACATTTTTAGAGCAAGCTAGCCAAATCTATGAGCTTTCCATATATACGAATGGTAGCAGAGACTATGCGCTCCACATGGCCAAACTGCTTGACCCTGCAAATCAATTGTTTGGTGATAGGATCATATCACGAGGTGAAAGCACGGAAAAGAATCAAAAGGGTCTAGATGTTTTACTTGCCCGAGGCACTGCTGTTGTGATCCTTGATGATAAGAAACAGGTGTGGAGAAATGAGGACCAGGACAATGTAATGGTAATGCCAAGATATCATTTTTTCAAATCGAGTTGTCAGAAGTTTGGCATCAGTAATGCTAAGCCTTACTCTGAGTCAAAGACCGATGAACGTGATCGGTTTGGAAGACCTTTTCTGGCCACTGTACTCCAAGTTCTTAGGCATATACACAACTTATTCTTTAATGCAGTGGAGTTACATGGGTGTGAACTTATCGACAGAGATGTTAGGCCTGTTTTGGAAAGGGTAAAGAAAGAAGGCTTGAATGGCTGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

320

Amino Acids

36.54

Weight (kDa)

8.54

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	100 - 240	1.5e-23	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	578, 643
AcoI	YGGCCR	2 cut(s)	528, 819
AcsI	RAATTY	2 cut(s)	138, 171
AcuI	CTGAAG	1 cut(s)	395
AdeI	CACNNNGTG	2 cut(s)	409, 584
AfaI	GTAC	1 cut(s)	828
AfiI	CCNNNNNNNGG	2 cut(s)	73, 435
AgsI	TTSAA	3 cut(s)	143, 727, 946
AhdI	GACNNNNNGTC	1 cut(s)	352
AjnI	CCWGG	2 cut(s)	84, 687
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 284, 316
AluBI	AGCT	3 cut(s)	433, 467, 484
AluI	AGCT	3 cut(s)	433, 467, 484
Alw26I	GTCTC	2 cut(s)	27, 504
AlwI	GGATC	2 cut(s)	578, 643
Ama87I	CYCGRG	1 cut(s)	630
AoxI	GGCC	5 cut(s)	113, 437, 528, 819, 911
ApoI	RAATTY	2 cut(s)	138, 171
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	2 cut(s)	114, 685
AsuHPI	GGTGA	6 cut(s)	176, 292, 332, 348, 575, 596
AsuNHI	GCTAGC	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	630
AvaII	GGWCC	1 cut(s)	685
BalI	TGGCCA	2 cut(s)	530, 821
BauI	CACGAG	1 cut(s)	579
BbsI	GAAGAC	2 cut(s)	174, 814
BbvCI	CCTCAGC	1 cut(s)	434
BciT130I	CCWGG	2 cut(s)	86, 689
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	2 cut(s)	27, 504
BfaI	CTAG	3 cut(s)	267, 468, 614
BfmI	CTRYAG	1 cut(s)	392
BlpI	GCTNAGC	1 cut(s)	762
Bme1390I	CCNGG	2 cut(s)	86, 689
Bme18I	GGWCC	1 cut(s)	685
BmeRI	GACNNNNNGTC	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	630
BmgT120I	GGNCC	2 cut(s)	114, 685
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	2 cut(s)	86, 689
BmsI	GCATC	2 cut(s)	139, 759
BmtI	GCTAGC	1 cut(s)	471
BpiI	GAAGAC	2 cut(s)	174, 814
Bpu10I	CCTNAGC	1 cut(s)	434
Bpu1102I	GCTNAGC	1 cut(s)	762
BsaJI	CCNNGG	4 cut(s)	67, 85, 213, 631
BsaWI	WCCGGW	1 cut(s)	358
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 435
BseBI	CCWGG	2 cut(s)	86, 689
BseDI	CCNNGG	4 cut(s)	67, 85, 213, 631
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	2 cut(s)	73, 435
BseMII	CTCAG	2 cut(s)	425, 765
Bsh1285I	CGRYCG	3 cut(s)	18, 36, 247
BshFI	GGCC	5 cut(s)	115, 439, 530, 821, 913
BsiEI	CGRYCG	3 cut(s)	18, 36, 247
BsiHKCI	CYCGRG	1 cut(s)	630
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	2 cut(s)	73, 435
BsmAI	GTCTC	2 cut(s)	27, 504
BsnI	GGCC	5 cut(s)	115, 439, 530, 821, 913
BsoBI	CYCGRG	1 cut(s)	630
Bsp143I	GATC	7 cut(s)	33, 130, 310, 382, 570, 648, 796
Bsp1720I	GCTNAGC	1 cut(s)	762
BspANI	GGCC	5 cut(s)	115, 439, 530, 821, 913
BspCNI	CTCAG	2 cut(s)	426, 766
BspLI	GGNNCC	1 cut(s)	65
BspMAI	CTGCAG	1 cut(s)	396
BspOI	GCTAGC	1 cut(s)	471
BspPI	GGATC	2 cut(s)	578, 643
BssECI	CCNNGG	4 cut(s)	67, 85, 213, 631
BssMI	GATC	7 cut(s)	33, 130, 310, 382, 570, 648, 796
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	2 cut(s)	86, 689
Bst4CI	ACNGT	2 cut(s)	19, 826
BstC8I	GCNNGC	2 cut(s)	465, 469
BstDEI	CTNAG	5 cut(s)	227, 434, 762, 774, 839
BstF5I	GGATG	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	7 cut(s)	36, 133, 313, 385, 573, 651, 799
BstMAI	GTCTC	2 cut(s)	27, 504
BstMBI	GATC	7 cut(s)	33, 130, 310, 382, 570, 648, 796
BstMCI	CGRYCG	3 cut(s)	18, 36, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	948
BstNI	CCWGG	2 cut(s)	86, 689
BstSCI	CCNGG	2 cut(s)	84, 687
BstSFI	CTRYAG	1 cut(s)	392
BstV2I	GAAGAC	2 cut(s)	174, 814
BstXI	CCANNNNNNTGG	1 cut(s)	220
BsuRI	GGCC	5 cut(s)	115, 439, 530, 821, 913
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	2 cut(s)	636, 876
BtsIMutI	CAGTG	3 cut(s)	636, 822, 876
Cac8I	GCNNGC	2 cut(s)	465, 469
CfoI	GCGC	1 cut(s)	520
Cfr13I	GGNCC	2 cut(s)	114, 685
Csp6I	GTAC	1 cut(s)	827
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	3 cut(s)	98, 526, 881
CviQI	GTAC	1 cut(s)	827
DdeI	CTNAG	5 cut(s)	227, 434, 762, 774, 839
DpnI	GATC	7 cut(s)	35, 132, 312, 384, 572, 650, 798
DpnII	GATC	7 cut(s)	33, 130, 310, 382, 570, 648, 796
DraIII	CACNNNGTG	2 cut(s)	409, 584
DriI	GACNNNNNGTC	1 cut(s)	352
EaeI	YGGCCR	2 cut(s)	528, 819
Eam1105I	GACNNNNNGTC	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	913
Eco32I	GATATC	1 cut(s)	716
Eco47I	GGWCC	1 cut(s)	685
Eco57I	CTGAAG	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	630
EcoRII	CCWGG	2 cut(s)	84, 687
EcoRV	GATATC	1 cut(s)	716
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	3 cut(s)	101, 529, 884
FatI	CATG	3 cut(s)	97, 525, 880
FbaI	TGATCA	1 cut(s)	382
FokI	GGATG	1 cut(s)	410
FspBI	CTAG	3 cut(s)	267, 468, 614
GlaI	GCGC	1 cut(s)	519
HaeIII	GGCC	5 cut(s)	115, 439, 530, 821, 913
HapII	CCGG	1 cut(s)	359
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	3 cut(s)	101, 529, 884
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HinfI	GANTC	3 cut(s)	28, 601, 776
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	6 cut(s)	176, 292, 332, 348, 575, 596
Hpy166II	GTNNAC	2 cut(s)	403, 890
Hpy188I	TCNGA	6 cut(s)	27, 33, 82, 375, 741, 775
Hpy188III	TCNNGA	5 cut(s)	134, 308, 314, 579, 614
Hpy8I	GTNNAC	2 cut(s)	403, 890
HpyAV	CCTTC	3 cut(s)	370, 407, 932
HpyCH4III	ACNGT	2 cut(s)	19, 826
HpyCH4IV	ACGT	2 cut(s)	237, 793
HpyCH4V	TGCA	4 cut(s)	152, 394, 548, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	948
HpyF3I	CTNAG	5 cut(s)	227, 434, 762, 774, 839
HpySE526I	ACGT	2 cut(s)	237, 793
Hsp92II	CATG	3 cut(s)	101, 529, 884
HspAI	GCGC	1 cut(s)	518
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	7 cut(s)	33, 130, 310, 382, 570, 648, 796
LmnI	GCTCC	1 cut(s)	525
LweI	GCATC	2 cut(s)	139, 759
MaeI	CTAG	3 cut(s)	267, 468, 614
MaeII	ACGT	2 cut(s)	237, 793
MaeIII	GTNAC	3 cut(s)	203, 354, 876
MalI	GATC	7 cut(s)	35, 132, 312, 384, 572, 650, 798
MboI	GATC	7 cut(s)	33, 130, 310, 382, 570, 648, 796
MboII	GAAGA	4 cut(s)	174, 374, 377, 819
MfeI	CAATTG	1 cut(s)	554
MlsI	TGGCCA	2 cut(s)	530, 821
MluCI	AATT	3 cut(s)	138, 171, 554
MluNI	TGGCCA	2 cut(s)	530, 821
MlyI	GAGTC	2 cut(s)	22, 785
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	7 cut(s)	54, 62, 105, 429, 575, 626, 676
Mox20I	TGGCCA	2 cut(s)	530, 821
MscI	TGGCCA	2 cut(s)	530, 821
MseI	TTAA	1 cut(s)	864
MslI	CAYNNNNRTG	1 cut(s)	885
Msp20I	TGGCCA	2 cut(s)	530, 821
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	86, 689
MunI	CAATTG	1 cut(s)	554
MvaI	CCWGG	2 cut(s)	86, 689
MwoI	GCNNNNNNNGC	1 cut(s)	948
NdeII	GATC	7 cut(s)	33, 130, 310, 382, 570, 648, 796
NheI	GCTAGC	1 cut(s)	467
NlaIII	CATG	3 cut(s)	101, 529, 884
NlaIV	GGNNCC	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	354
PceI	AGGCCT	1 cut(s)	913
PfeI	GAWTC	1 cut(s)	601
PflFI	GACNNNGTC	1 cut(s)	19
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	2 cut(s)	22, 784
PpsI	GAGTC	2 cut(s)	22, 784
Psp6I	CCWGG	2 cut(s)	84, 687
PspGI	CCWGG	2 cut(s)	84, 687
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	2 cut(s)	114, 685
PsrI	GAACNNNNNNTAC	2 cut(s)	819, 851
PstI	CTGCAG	1 cut(s)	396
PsyI	GACNNNGTC	1 cut(s)	19
PvuI	CGATCG	1 cut(s)	36
RsaI	GTAC	1 cut(s)	828
RsaNI	GTAC	1 cut(s)	827
RseI	CAYNNNNRTG	1 cut(s)	885
SaqAI	TTAA	1 cut(s)	864
Sau3AI	GATC	7 cut(s)	33, 130, 310, 382, 570, 648, 796
Sau96I	GGNCC	2 cut(s)	114, 685
SchI	GAGTC	2 cut(s)	22, 785
ScrFI	CCNGG	2 cut(s)	86, 689
SfaNI	GCATC	2 cut(s)	139, 759
SfcI	CTRYAG	1 cut(s)	392
SinI	GGWCC	1 cut(s)	685
SmiMI	CAYNNNNRTG	1 cut(s)	885
Sse9I	AATT	3 cut(s)	138, 171, 554
SseBI	AGGCCT	1 cut(s)	913
SspMI	CTAG	3 cut(s)	267, 468, 614
StuI	AGGCCT	1 cut(s)	913
StyD4I	CCNGG	2 cut(s)	84, 687
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	19, 826
TaiI	ACGT	2 cut(s)	240, 796
TaqI	TCGA	6 cut(s)	36, 247, 309, 315, 731, 897
TaqII	GACCGA	2 cut(s)	233, 800
TasI	AATT	3 cut(s)	138, 171, 554
TatI	WGTACW	1 cut(s)	826
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	1 cut(s)	864
Tru9I	TTAA	1 cut(s)	864
TscAI	CASTG	3 cut(s)	643, 829, 876
TseFI	GTSAC	1 cut(s)	354
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	4 cut(s)	82, 183, 287, 804
TspGWI	ACGGA	1 cut(s)	608
TspRI	CASTG	3 cut(s)	643, 829, 876
Tth111I	GACNNNGTC	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	685
XapI	RAATTY	2 cut(s)	138, 171
XbaI	TCTAGA	1 cut(s)	613
XspI	CTAG	3 cut(s)	267, 468, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.