FvH4_7g02801

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
3120144 .. 3121599
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02801.t1

Sequence Viewer

Length: 933 bp
ATGATGATGAGTTTGGCAACCGTGTCTCCGATCGACAACCTTGTTGGGTGTCGCAAGAGGAGCCGAGGTTTGGTTTCCGACCTGGGATTCATACAGGACAAGACCAAGAGGCCCAAGACAGAAACTGATCTGGGAATTCAACAAGATGCGAGATTGGCCGGTGATGAACTTTCCAGCGTGAGATTTGGGTACATCAGGAAGGGTTTGGGGCTTAGTGATGACGTAATCAACCGATTACGCAACGAGATCACTAGAAACCTATTGGTGAAGCATAAGAAACTTCATTTGGTTCTCGATCTCGACCACACCCTGCTGAATACCACTTACATTGACAAGATGTCACCGGAAGAAGAATATCTGAAGGCTGATCATTCTCTGCAGGATGTTCACATTGCGGGAAGTCAAAGTCAATTGATGACCAAGTTGAGACCGCATGTCAGGACATTTTTAGAGCAAGCCAGTGAAATGTTTGAGCTCTCTATATCCACAATGGGCAGTGGAGGCTATGCGCTTCAAATGGCTAACTTGCTTGACCCTGCAAATCAAATGTTTGGTGGTAGCATCATATCGCGAAGCGATGGCACGGTAAACAAGCAAAAGGGGCTAGATGTTCTGCTTGCCCGACCTTCCGCTGTTGTGATCCTTGATGATAAGAAACAGATGTGGAGAAATGAGGACCAGGCGAATGTAATAGAATTGCCAAGATACCATTTCTTTAGGTCCAGTTTACAGAAGTATGGTCTCAGTGATGCCACGCCTTACTCTGAGTCCAAGACCGATGAACGTGATCCGCTTGGAAGAGCTTATCTGGCAACTGTACTCCAAGTTCTTAAGCATATCCACAACATATTCTTCAATGCAGTGGAGTTAGATGGGTGTGAACTTATCGACAGAGATGTTAGGCCTGTTTTGGAAAGGGTCCTCGAAAGCTGA

Protein Analysis

311

Amino Acids

35.0

Weight (kDa)

6.52

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 95 - 253 1.7e-22 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000221)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58003 AT5G58003 AT5G58003
fragaria_vesca FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica MD09G1131300.v1.1
prunus_persica Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis pycom09g05350
rosa_chinensis RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 571
AciI CCGC 4 cut(s) 395, 431, 630, 791
AclWI GGATC 2 cut(s) 634, 782
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 2 cut(s) 191, 819
AfiI CCNNNNNNNGG 1 cut(s) 70
AflII CTTAAG 1 cut(s) 830
AgsI TTSAA 3 cut(s) 140, 515, 856
AhdI GACNNNNNGTC 2 cut(s) 337, 434
AjnI CCWGG 2 cut(s) 81, 678
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 3 cut(s) 475, 803, 930
AluI AGCT 3 cut(s) 475, 803, 930
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 3 cut(s) 30, 421, 746
AlwI GGATC 2 cut(s) 634, 782
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 3 cut(s) 110, 156, 902
ApoI RAATTY 1 cut(s) 135
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 4 cut(s) 111, 676, 720, 919
AsuHPI GGTGA 3 cut(s) 173, 277, 333
AvaII GGWCC 3 cut(s) 676, 720, 919
BanII GRGCYC 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 477
BccI CCATC 2 cut(s) 572, 866
BciT130I CCWGG 2 cut(s) 83, 680
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 3 cut(s) 30, 421, 746
BfaI CTAG 2 cut(s) 252, 605
BfmI CTRYAG 1 cut(s) 377
BfrI CTTAAG 1 cut(s) 830
Bme1390I CCNGG 2 cut(s) 83, 680
Bme18I GGWCC 3 cut(s) 676, 720, 919
BmeRI GACNNNNNGTC 2 cut(s) 337, 434
BmgT120I GGNCC 4 cut(s) 111, 676, 720, 919
BmiI GGNNCC 2 cut(s) 62, 920
BmrFI CCNGG 2 cut(s) 83, 680
BmsI GCATC 3 cut(s) 136, 570, 739
BsaI GGTCTC 2 cut(s) 421, 746
BsaJI CCNNGG 2 cut(s) 64, 82
BsaWI WCCGGW 1 cut(s) 343
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 52, 82
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 459, 723
Bse3DI GCAATG 1 cut(s) 390
BseBI CCWGG 2 cut(s) 83, 680
BseDI CCNNGG 2 cut(s) 64, 82
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 756, 757
BseNI ACTGG 2 cut(s) 459, 723
BseRI GAGGAG 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 571
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 3 cut(s) 112, 158, 904
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 477
BsiSI CCGG 2 cut(s) 159, 344
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 3 cut(s) 30, 421, 746
BsnI GGCC 3 cut(s) 112, 158, 904
Bso31I GGTCTC 2 cut(s) 421, 746
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 7 cut(s) 30, 127, 246, 295, 367, 639, 787
Bsp68I TCGCGA 1 cut(s) 571
BspACI CCGC 4 cut(s) 395, 431, 630, 791
BspANI GGCC 3 cut(s) 112, 158, 904
BspCNI CTCAG 2 cut(s) 756, 757
BspFNI CGCG 1 cut(s) 571
BspLI GGNNCC 2 cut(s) 62, 920
BspMAI CTGCAG 1 cut(s) 381
BspPI GGATC 2 cut(s) 634, 782
BspQI GCTCTTC 1 cut(s) 793
BspTI CTTAAG 1 cut(s) 830
BspTNI GGTCTC 2 cut(s) 421, 746
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 2 cut(s) 459, 723
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 64, 82
BssMI GATC 7 cut(s) 30, 127, 246, 295, 367, 639, 787
Bst2UI CCWGG 2 cut(s) 83, 680
Bst4CI ACNGT 3 cut(s) 22, 586, 817
Bst6I CTCTTC 1 cut(s) 793
BstAFI CTTAAG 1 cut(s) 830
BstC8I GCNNGC 2 cut(s) 456, 618
BstDEI CTNAG 3 cut(s) 212, 743, 765
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 1 cut(s) 571
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 7 cut(s) 33, 130, 249, 298, 370, 642, 790
BstMAI GTCTC 3 cut(s) 30, 421, 746
BstMBI GATC 7 cut(s) 30, 127, 246, 295, 367, 639, 787
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 5 cut(s) 60, 155, 501, 601, 809
BstNI CCWGG 2 cut(s) 83, 680
BstNSI RCATGY 1 cut(s) 437
BstSCI CCNGG 2 cut(s) 81, 678
BstSFI CTRYAG 1 cut(s) 377
BstUI CGCG 1 cut(s) 571
BsuRI GGCC 3 cut(s) 112, 158, 904
BtgZI GCGATG 1 cut(s) 591
BtsCI GGATG 1 cut(s) 388
BtsI GCAGTG 2 cut(s) 502, 867
BtsIMutI CAGTG 4 cut(s) 466, 502, 751, 867
BtuMI TCGCGA 1 cut(s) 571
Cac8I GCNNGC 2 cut(s) 456, 618
CaiI CAGNNNCTG 1 cut(s) 125
CfoI GCGC 1 cut(s) 511
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 4 cut(s) 111, 676, 720, 919
Csp6I GTAC 2 cut(s) 190, 818
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 1 cut(s) 434
CviQI GTAC 2 cut(s) 190, 818
DdeI CTNAG 3 cut(s) 212, 743, 765
DpnI GATC 7 cut(s) 32, 129, 248, 297, 369, 641, 789
DpnII GATC 7 cut(s) 30, 127, 246, 295, 367, 639, 787
DriI GACNNNNNGTC 2 cut(s) 337, 434
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 793
Eam1105I GACNNNNNGTC 2 cut(s) 337, 434
EarI CTCTTC 1 cut(s) 793
Ecl136II GAGCTC 1 cut(s) 475
Eco147I AGGCCT 1 cut(s) 904
Eco24I GRGCYC 1 cut(s) 477
Eco31I GGTCTC 2 cut(s) 421, 746
Eco47I GGWCC 3 cut(s) 676, 720, 919
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 475
EcoO109I RGGNCCY 1 cut(s) 919
EcoRI GAATTC 1 cut(s) 135
EcoRII CCWGG 2 cut(s) 81, 678
EcoT38I GRGCYC 1 cut(s) 477
FaeI CATG 1 cut(s) 437
FaiI YATR 9 cut(s) 92, 273, 435, 482, 507, 566, 738, 837, 848
FatI CATG 1 cut(s) 433
FauI CCCGC 1 cut(s) 388
FbaI TGATCA 1 cut(s) 367
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 477
FspBI CTAG 2 cut(s) 252, 605
GlaI GCGC 1 cut(s) 510
HaeIII GGCC 3 cut(s) 112, 158, 904
HapII CCGG 2 cut(s) 159, 344
HhaI GCGC 1 cut(s) 511
Hin1II CATG 1 cut(s) 437
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HinfI GANTC 2 cut(s) 87, 767
HpaII CCGG 2 cut(s) 159, 344
HphI GGTGA 3 cut(s) 173, 277, 333
Hpy166II GTNNAC 4 cut(s) 388, 589, 728, 881
Hpy188I TCNGA 4 cut(s) 30, 79, 360, 766
Hpy188III TCNNGA 5 cut(s) 196, 293, 299, 439, 570
Hpy8I GTNNAC 4 cut(s) 388, 589, 728, 881
HpyAV CCTTC 3 cut(s) 193, 355, 636
HpyCH4III ACNGT 3 cut(s) 22, 586, 817
HpyCH4IV ACGT 2 cut(s) 222, 784
HpyCH4V TGCA 3 cut(s) 379, 539, 860
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 155, 501, 601, 809
HpyF3I CTNAG 3 cut(s) 212, 743, 765
HpySE526I ACGT 2 cut(s) 222, 784
Hsp92II CATG 1 cut(s) 437
HspAI GCGC 1 cut(s) 509
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 7 cut(s) 30, 127, 246, 295, 367, 639, 787
LguI GCTCTTC 1 cut(s) 793
LmnI GCTCC 1 cut(s) 60
LweI GCATC 3 cut(s) 136, 570, 739
MaeI CTAG 2 cut(s) 252, 605
MaeII ACGT 2 cut(s) 222, 784
MaeIII GTNAC 1 cut(s) 339
MalI GATC 7 cut(s) 32, 129, 248, 297, 369, 641, 789
MboI GATC 7 cut(s) 30, 127, 246, 295, 367, 639, 787
MboII GAAGA 4 cut(s) 359, 362, 810, 844
MfeI CAATTG 1 cut(s) 410
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 3 cut(s) 135, 410, 695
MlyI GAGTC 1 cut(s) 776
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 6 cut(s) 51, 59, 102, 494, 667, 932
MseI TTAA 1 cut(s) 831
MspA1I CMGCKG 1 cut(s) 632
MspCI CTTAAG 1 cut(s) 830
MspI CCGG 2 cut(s) 159, 344
MspR9I CCNGG 2 cut(s) 83, 680
MunI CAATTG 1 cut(s) 410
MvaI CCWGG 2 cut(s) 83, 680
MvnI CGCG 1 cut(s) 571
MwoI GCNNNNNNNGC 5 cut(s) 60, 155, 501, 601, 809
NdeII GATC 7 cut(s) 30, 127, 246, 295, 367, 639, 787
NlaIII CATG 1 cut(s) 437
NlaIV GGNNCC 2 cut(s) 62, 920
NmeAIII GCCGAG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 339
NruI TCGCGA 1 cut(s) 571
NspI RCATGY 1 cut(s) 437
PceI AGGCCT 1 cut(s) 904
PciSI GCTCTTC 1 cut(s) 793
PfeI GAWTC 1 cut(s) 87
Ple19I CGATCG 1 cut(s) 33
PleI GAGTC 1 cut(s) 775
PpsI GAGTC 1 cut(s) 775
PpuMI RGGWCCY 1 cut(s) 919
Psp124BI GAGCTC 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 919
Psp6I CCWGG 2 cut(s) 81, 678
PspGI CCWGG 2 cut(s) 81, 678
PspN4I GGNNCC 2 cut(s) 62, 920
PspPI GGNCC 4 cut(s) 111, 676, 720, 919
PspPPI RGGWCCY 1 cut(s) 919
PsrI GAACNNNNNNTAC 2 cut(s) 810, 842
PstI CTGCAG 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 125
PvuI CGATCG 1 cut(s) 33
RruI TCGCGA 1 cut(s) 571
RsaI GTAC 2 cut(s) 191, 819
RsaNI GTAC 2 cut(s) 190, 818
SacI GAGCTC 1 cut(s) 477
SapI GCTCTTC 1 cut(s) 793
SaqAI TTAA 1 cut(s) 831
Sau3AI GATC 7 cut(s) 30, 127, 246, 295, 367, 639, 787
Sau96I GGNCC 4 cut(s) 111, 676, 720, 919
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 2 cut(s) 83, 680
SduI GDGCHC 1 cut(s) 477
SfaNI GCATC 3 cut(s) 136, 570, 739
SfcI CTRYAG 1 cut(s) 377
SinI GGWCC 3 cut(s) 676, 720, 919
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
Sse9I AATT 3 cut(s) 135, 410, 695
SseBI AGGCCT 1 cut(s) 904
SsiI CCGC 4 cut(s) 395, 431, 630, 791
SspMI CTAG 2 cut(s) 252, 605
SstI GAGCTC 1 cut(s) 477
StuI AGGCCT 1 cut(s) 904
StyD4I CCNGG 2 cut(s) 81, 678
TaaI ACNGT 3 cut(s) 22, 586, 817
TaiI ACGT 2 cut(s) 225, 787
TaqI TCGA 5 cut(s) 33, 294, 300, 888, 924
TaqII GACCGA 1 cut(s) 791
TasI AATT 3 cut(s) 135, 410, 695
TatI WGTACW 1 cut(s) 817
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 831
Tru9I TTAA 1 cut(s) 831
TscAI CASTG 4 cut(s) 466, 502, 751, 867
TseFI GTSAC 1 cut(s) 339
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 4 cut(s) 79, 180, 272, 795
TspRI CASTG 4 cut(s) 466, 502, 751, 867
Vha464I CTTAAG 1 cut(s) 830
VpaK11BI GGWCC 3 cut(s) 676, 720, 919
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 437
XspI CTAG 2 cut(s) 252, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.