Rw6G018800

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
37397659 .. 37398903
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G018800.1

Sequence Viewer

Length: 1164 bp
ATGAGTGTGGCTACTGTGTCTCCGATTTTACATAATATTGATAACCGTGTTGGGTATCTTAAGAGGGGACGGGGGTTAGATTCTGATTACAGTGACCTAGGAGTGATAGATCAGAGGGCCAAAAGGCTTAAGGTAGAGACTGATGTGCTGGGAGTTTCAGAAGAGGCTGGGTTTGCTTTTGATGAAAAACCCAGGTTTTTTGAAGTGAGATTTGGGTATATACCTAAGGGGTTAGTGCTTAGGGATGATGAAATTGATCGATTATGCAACGAAAACACTAGGAATCTATTGTTGAACCATAAGAAACTTCATCTGGTTCTTGATCTAGACCACACCCTCCTGAATACCACTTTCCTTGATGAGATGTCACCCGACGAAGAATATCTGAAGACCCAAACCCAATCTGATCATTCTCTGCAGTATGTTCACGTTGTTGACACTCCCAGTAGGCAATTGATGACCAAGTTGAGGCCTTATATCAGGACGTTTTTGGTGCAAGCCAGTCAAATGTTTGAGCTGTCCATATACACAATGGGTAATCGAGATTATGCGCTAGAAATGGCTAAGCTGCTTGATCCAGGAAATCATATCTTTGGTGGTAGAGTCATATCGCGTGATGATAGCACAGAAACAGATAGAAAGAGTCTAGATGTCCTGCTTTCCCGAGATTCTGCTGTTGTGATCCTTGATGATACGAAAAATGTATGGACAAATGACAACAGGGACAATGTAATAACTGATGAATGTGATCGTTATGGAGGAGCTTATCTTGCAAATGTACTACGACTTCTTGGGTATATCCACACCATATTCTTTAATGAAGTTGAGTTACAGGGGTGGGATCTTATCGACAGAGATGTGAGGCTTGTCTTGAAAATCCTTAAGAAGGAAGTCTTGAAGGGCTGTAAAATTGTTTTCAGCCGTGTATTCCCCTCAAATGTCGAAGCTAATACTCATCCTTTGTGGAAGATGGCGGAGCAGCTGGGCGCTGCTTGTTCAACACAAGTCGATCCATCAGTCACACATGTAGTTGCAGCAAATGCTCGAACACAGAAATCTTGTTGGGCAGTTAAAGAAAGAAAGTTTTTGGTGAATCCCCAATGGATTCGTTCTGCAAATATTATGTGGCAAAAGCAACCTGAAGATAATTTTCCCTGTCATTAG

Protein Analysis

387

Amino Acids

44.45

Weight (kDa)

6.03

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 104 - 245 1.3e-22 NLI interacting factor-like phosphatase
BRCT PF00533 297 - 370 1.6e-08 BRCA1 C Terminus (BRCT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000221)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58003 AT5G58003 AT5G58003
fragaria_vesca FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica MD09G1131300.v1.1
prunus_persica Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis pycom09g05350
rosa_chinensis RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 613
AciI CCGC 1 cut(s) 974
AclWI GGATC 4 cut(s) 569, 676, 849, 1004
AcuI CTGAAG 2 cut(s) 407, 1161
AfaI GTAC 1 cut(s) 780
AfiI CCNNNNNNNGG 2 cut(s) 468, 886
AflII CTTAAG 3 cut(s) 59, 128, 881
AflIII ACRYGT 1 cut(s) 1024
AgsI TTSAA 5 cut(s) 203, 295, 874, 898, 999
AjnI CCWGG 2 cut(s) 191, 577
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 5 cut(s) 517, 568, 764, 947, 982
AluI AGCT 5 cut(s) 517, 568, 764, 947, 982
Alw26I GTCTC 2 cut(s) 24, 131
AlwI GGATC 4 cut(s) 569, 676, 849, 1004
Ama87I CYCGRG 1 cut(s) 663
AoxI GGCC 2 cut(s) 117, 470
ApeKI GCWGC 4 cut(s) 568, 979, 989, 1034
AspA2I CCTAGG 1 cut(s) 97
AspLEI GCGC 2 cut(s) 553, 989
AspS9I GGNCC 1 cut(s) 117
AsuHPI GGTGA 2 cut(s) 360, 1102
AvaI CYCGRG 1 cut(s) 663
AvrII CCTAGG 1 cut(s) 97
AxyI CCTNAGG 1 cut(s) 225
BarI GAAGNNNNNNTAC 4 cut(s) 771, 803, 813, 845
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 4 cut(s) 555, 976, 991, 1046
BccI CCATC 2 cut(s) 964, 1021
BceAI ACGGC 1 cut(s) 906
BciT130I CCWGG 2 cut(s) 193, 579
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 24, 131
BfaI CTAG 5 cut(s) 98, 279, 326, 554, 647
BfmI CTRYAG 1 cut(s) 416
BfoI RGCGCY 1 cut(s) 990
BfrI CTTAAG 3 cut(s) 59, 128, 881
BisI GCNGC 4 cut(s) 569, 980, 990, 1035
BlnI CCTAGG 1 cut(s) 97
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 4 cut(s) 570, 981, 991, 1036
Bme1390I CCNGG 2 cut(s) 193, 579
BmeT110I CYCGRG 1 cut(s) 663
BmgT120I GGNCC 1 cut(s) 117
BmrFI CCNGG 2 cut(s) 193, 579
BmrI ACTGGG 1 cut(s) 438
BmuI ACTGGG 1 cut(s) 438
BpiI GAAGAC 1 cut(s) 395
Bpu10I CCTNAGC 1 cut(s) 239
Bpu1102I GCTNAGC 1 cut(s) 564
Bsa29I ATCGAT 1 cut(s) 259
BsaJI CCNNGG 2 cut(s) 97, 191
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 468, 886
Bse1I ACTGG 2 cut(s) 444, 501
Bse21I CCTNAGG 1 cut(s) 225
BseBI CCWGG 2 cut(s) 193, 579
BseCI ATCGAT 1 cut(s) 259
BseDI CCNNGG 2 cut(s) 97, 191
BseGI GGATG 2 cut(s) 250, 955
BseLI CCNNNNNNNGG 2 cut(s) 468, 886
BseNI ACTGG 2 cut(s) 444, 501
BseRI GAGGAG 1 cut(s) 774
BseXI GCAGC 4 cut(s) 555, 976, 991, 1046
BseYI CCCAGC 3 cut(s) 148, 167, 982
Bsh1236I CGCG 1 cut(s) 613
BshFI GGCC 2 cut(s) 119, 472
BshVI ATCGAT 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 663
BslFI GGGAC 2 cut(s) 81, 737
BslI CCNNNNNNNGG 2 cut(s) 468, 886
BsmAI GTCTC 2 cut(s) 24, 131
BsmFI GGGAC 2 cut(s) 81, 737
BsnI GGCC 2 cut(s) 119, 472
BsoBI CYCGRG 1 cut(s) 663
Bsp143I GATC 9 cut(s) 109, 256, 322, 406, 574, 681, 748, 841, 1009
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 1 cut(s) 974
BspANI GGCC 2 cut(s) 119, 472
BspDI ATCGAT 1 cut(s) 259
BspFNI CGCG 1 cut(s) 613
BspMAI CTGCAG 1 cut(s) 420
BspPI GGATC 4 cut(s) 569, 676, 849, 1004
BspTI CTTAAG 3 cut(s) 59, 128, 881
BsrI ACTGG 2 cut(s) 444, 501
BssECI CCNNGG 2 cut(s) 97, 191
BssMI GATC 9 cut(s) 109, 256, 322, 406, 574, 681, 748, 841, 1009
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 2 cut(s) 193, 579
Bst4CI ACNGT 3 cut(s) 16, 47, 92
Bst6I CTCTTC 1 cut(s) 156
BstAFI CTTAAG 3 cut(s) 59, 128, 881
BstAPI GCANNNNNTGC 1 cut(s) 1040
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 3 cut(s) 225, 239, 564
BstENI CCTNNNNNAGG 1 cut(s) 884
BstF5I GGATG 2 cut(s) 250, 955
BstFNI CGCG 1 cut(s) 613
BstH2I RGCGCY 1 cut(s) 990
BstHHI GCGC 2 cut(s) 553, 989
BstKTI GATC 9 cut(s) 112, 259, 325, 409, 577, 684, 751, 844, 1012
BstMAI GTCTC 2 cut(s) 24, 131
BstMBI GATC 9 cut(s) 109, 256, 322, 406, 574, 681, 748, 841, 1009
BstMWI GCNNNNNNNGC 3 cut(s) 173, 770, 1040
BstNI CCWGG 2 cut(s) 193, 579
BstNSI RCATGY 1 cut(s) 1028
BstSCI CCNGG 2 cut(s) 191, 577
BstSFI CTRYAG 1 cut(s) 416
BstUI CGCG 1 cut(s) 613
BstV1I GCAGC 4 cut(s) 555, 976, 991, 1046
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 841
BstYI RGATCY 1 cut(s) 841
Bsu15I ATCGAT 1 cut(s) 259
Bsu36I CCTNAGG 1 cut(s) 225
BsuRI GGCC 2 cut(s) 119, 472
BsuTUI ATCGAT 1 cut(s) 259
BtsCI GGATG 2 cut(s) 250, 955
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 498
CfoI GCGC 2 cut(s) 553, 989
Cfr13I GGNCC 1 cut(s) 117
ClaI ATCGAT 1 cut(s) 259
Csp6I GTAC 1 cut(s) 779
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviAII CATG 1 cut(s) 1025
CviQI GTAC 1 cut(s) 779
DdeI CTNAG 3 cut(s) 225, 239, 564
DpnI GATC 9 cut(s) 111, 258, 324, 408, 576, 683, 750, 843, 1011
DpnII GATC 9 cut(s) 109, 256, 322, 406, 574, 681, 748, 841, 1009
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 989
Eco130I CCWWGG 1 cut(s) 97
Eco147I AGGCCT 1 cut(s) 472
Eco57I CTGAAG 2 cut(s) 407, 1161
Eco81I CCTNAGG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 663
EcoNI CCTNNNNNAGG 1 cut(s) 884
EcoRII CCWGG 2 cut(s) 191, 577
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 1028
FalI AAGNNNNNCTT 2 cut(s) 878, 910
FaqI GGGAC 2 cut(s) 81, 737
FatI CATG 1 cut(s) 1024
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 4 cut(s) 569, 980, 990, 1035
FokI GGATG 2 cut(s) 257, 942
Fsp4HI GCNGC 4 cut(s) 569, 980, 990, 1035
FspBI CTAG 5 cut(s) 98, 279, 326, 554, 647
GlaI GCGC 2 cut(s) 552, 988
GluI GCNGC 4 cut(s) 569, 980, 990, 1035
GsaI CCCAGC 3 cut(s) 152, 171, 986
HaeII RGCGCY 1 cut(s) 990
HaeIII GGCC 2 cut(s) 119, 472
HhaI GCGC 2 cut(s) 553, 989
Hin1II CATG 1 cut(s) 1028
Hin6I GCGC 2 cut(s) 551, 987
HinP1I GCGC 2 cut(s) 551, 987
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 7 cut(s) 80, 283, 603, 643, 668, 1093, 1105
HphI GGTGA 2 cut(s) 360, 1102
Hpy166II GTNNAC 2 cut(s) 427, 436
Hpy188I TCNGA 6 cut(s) 24, 85, 114, 160, 387, 406
Hpy188III TCNNGA 9 cut(s) 320, 326, 340, 481, 542, 647, 663, 871, 895
Hpy8I GTNNAC 2 cut(s) 427, 436
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 880, 892
HpyCH4III ACNGT 3 cut(s) 16, 47, 92
HpyCH4IV ACGT 2 cut(s) 429, 485
HpyCH4V TGCA 6 cut(s) 267, 418, 496, 773, 1034, 1115
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 770, 1040
HpyF3I CTNAG 3 cut(s) 225, 239, 564
HpySE526I ACGT 2 cut(s) 429, 485
Hsp92II CATG 1 cut(s) 1028
HspAI GCGC 2 cut(s) 551, 987
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 9 cut(s) 109, 256, 322, 406, 574, 681, 748, 841, 1009
LmnI GCTCC 2 cut(s) 761, 976
Lsp1109I GCAGC 4 cut(s) 555, 976, 991, 1046
MaeI CTAG 5 cut(s) 98, 279, 326, 554, 647
MaeII ACGT 2 cut(s) 429, 485
MaeIII GTNAC 4 cut(s) 92, 366, 828, 1018
MalI GATC 9 cut(s) 111, 258, 324, 408, 576, 683, 750, 843, 1011
MboI GATC 9 cut(s) 109, 256, 322, 406, 574, 681, 748, 841, 1009
MboII GAAGA 5 cut(s) 173, 389, 400, 979, 1154
MfeI CAATTG 1 cut(s) 452
MflI RGATCY 1 cut(s) 841
MluCI AATT 4 cut(s) 252, 452, 909, 1147
MlyI GAGTC 2 cut(s) 612, 652
MnlI CCTC 8 cut(s) 57, 108, 157, 347, 462, 752, 855, 943
MseI TTAA 5 cut(s) 60, 129, 816, 882, 1071
MspA1I CMGCKG 1 cut(s) 982
MspCI CTTAAG 3 cut(s) 59, 128, 881
MspR9I CCNGG 2 cut(s) 193, 579
MunI CAATTG 1 cut(s) 452
MvaI CCWGG 2 cut(s) 193, 579
MvnI CGCG 1 cut(s) 613
MwoI GCNNNNNNNGC 3 cut(s) 173, 770, 1040
NdeII GATC 9 cut(s) 109, 256, 322, 406, 574, 681, 748, 841, 1009
NlaIII CATG 1 cut(s) 1028
NmuCI GTSAC 3 cut(s) 92, 366, 1018
NspI RCATGY 1 cut(s) 1028
PceI AGGCCT 1 cut(s) 472
PciI ACATGT 1 cut(s) 1024
PfeI GAWTC 5 cut(s) 80, 283, 668, 1093, 1105
PfoI TCCNGGA 1 cut(s) 577
PkrI GCNGC 4 cut(s) 570, 981, 991, 1036
PleI GAGTC 2 cut(s) 611, 651
PpsI GAGTC 2 cut(s) 611, 651
PscI ACATGT 1 cut(s) 1024
Psp6I CCWGG 2 cut(s) 191, 577
PspFI CCCAGC 3 cut(s) 148, 167, 982
PspGI CCWGG 2 cut(s) 191, 577
PspPI GGNCC 1 cut(s) 117
PstI CTGCAG 1 cut(s) 420
PsuI RGATCY 1 cut(s) 841
PvuII CAGCTG 1 cut(s) 982
RsaI GTAC 1 cut(s) 780
RsaNI GTAC 1 cut(s) 779
SaqAI TTAA 5 cut(s) 60, 129, 816, 882, 1071
SatI GCNGC 4 cut(s) 569, 980, 990, 1035
Sau3AI GATC 9 cut(s) 109, 256, 322, 406, 574, 681, 748, 841, 1009
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 2 cut(s) 612, 652
ScrFI CCNGG 2 cut(s) 193, 579
SfcI CTRYAG 1 cut(s) 416
SmlI CTYRAG 3 cut(s) 59, 128, 881
SmoI CTYRAG 3 cut(s) 59, 128, 881
Sse9I AATT 4 cut(s) 252, 452, 909, 1147
SseBI AGGCCT 1 cut(s) 472
SsiI CCGC 1 cut(s) 974
SspI AATATT 2 cut(s) 37, 1120
SspMI CTAG 5 cut(s) 98, 279, 326, 554, 647
StuI AGGCCT 1 cut(s) 472
StyD4I CCNGG 2 cut(s) 191, 577
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 3 cut(s) 16, 47, 92
TaiI ACGT 2 cut(s) 432, 488
TaqI TCGA 6 cut(s) 259, 541, 849, 942, 1008, 1045
TasI AATT 4 cut(s) 252, 452, 909, 1147
TatI WGTACW 1 cut(s) 778
TfiI GAWTC 5 cut(s) 80, 283, 668, 1093, 1105
Tru1I TTAA 5 cut(s) 60, 129, 816, 882, 1071
Tru9I TTAA 5 cut(s) 60, 129, 816, 882, 1071
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 3 cut(s) 92, 366, 1018
TseI GCWGC 4 cut(s) 568, 979, 989, 1034
Tsp45I GTSAC 3 cut(s) 92, 366, 1018
TspDTI ATGAA 5 cut(s) 198, 264, 299, 756, 834
TspRI CASTG 1 cut(s) 97
Vha464I CTTAAG 3 cut(s) 59, 128, 881
XagI CCTNNNNNAGG 1 cut(s) 884
XbaI TCTAGA 2 cut(s) 325, 646
XceI RCATGY 1 cut(s) 1028
XcmI CCANNNNNNNNNTGG 1 cut(s) 529
XmaJI CCTAGG 1 cut(s) 97
XspI CTAG 5 cut(s) 98, 279, 326, 554, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.