Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

59589683 .. 59618978

Gene Structure 29296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG440200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGATGAGAACGCTCAAACGGTGACTAATCATCACGCCATTCGAATCTCAATGAGTCTGGCCGAGTCTCCAGTACACTCTTCTAGCAGTGACGACTTTGCCGGGTTGCTTGAGAGAGAACTAAAGTCCAGTTCTTCAGAGTCATCACCAGAGGAAGAAGATGAAGATGATAAAGAAGCTGATGGTGATGGTGATGGCAGTGATGTTGAAAGTGAGAGCAGGATAAAAAGGCGTAAGGGAGATAATTTGGAAAGCGTAGAGGAAACTAATGGGTCGACTTCACAAGGACTTCCAGAACAAAAAAGCATTGGCAACGGAGGATACGTGTGCACATCCTCGGTCATTTGGAGATATGTGTTTTCGTTGTGGCCAGAGGTGATTGAGCAGTCTGGTGTGACATTTGGGTACATACAGAAGGGATTGAGACTTAATAATGATGAAATCGACCGGTTACGCAACACAGACATTAAGAAATCGCTAAATAATAAGAAACTTTATTTGGTACTGGATCTTGATCATACACTGCTAAATTCCACCCAGCTGAATCATATGACGGCAGAAGAAGAATATTTGATGAGCCCACCAGATTCGCTGCCAGATGAGTTGAAAGGCAGTCTTTTCAGACTGGACTTTATGCGTATGATGACCAAGTTAAGGCCCTTCATTAGGACATTTTTGAAGAAAGCCAGTGAAATGTTTGAAATGTACGTGTACACTATGGGTGATCGACCCTATGCATTGGAGATGGCCAAGTTGCTTGATAGGGTGATATCACGTGATGATGGTACCCAAAAACATCAAAAGGGTCTAGATATTGTGGTTGGGCAAGAAAGTGCTGTTCTGATACTGGATGATACAGAAAATGATCTCATCCACGGCCAACAAATACTCCATCGACTCTTTGCAAGGTTCGACACTCCTCATCGCGTCGTGATTAGCCTCCCACCTGAAAATCACCTTCTCCTCCTCATCGAATCAGTCGTCCTCCACCTTCGATTCGTCGTTGATCATATTGGTCAAATTCGACAACCGGTTATCAAAGCTGGAGAAGATCAACAACATATCCTCCCTCACCTCCTTCTGCGTGTTGCCCAGGCTCTTCATTATATGTTGCGCCGCCGCGAGCACCCGATCCTTTTCTCCTCCACCGCACGCAGAGGTCGCTATGCTCGTCATCGTTGTCGTCATGAAAGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

399

Amino Acids

45.72

Weight (kDa)

5.78

Isoelectric Point (pI)

57.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	166 - 291	3.9e-15	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	785
AccB1I	GGYRCC	1 cut(s)	785
AccI	GTMKAC	1 cut(s)	275
AccII	CGCG	2 cut(s)	927, 1122
AciI	CCGC	3 cut(s)	1117, 1120, 1149
AclWI	GGATC	2 cut(s)	516, 1126
AcoI	YGGCCR	4 cut(s)	60, 368, 747, 877
AcsI	RAATTY	2 cut(s)	529, 1020
AcuI	CTGAAG	1 cut(s)	120
AcvI	CACGTG	1 cut(s)	776
AfaI	GTAC	6 cut(s)	75, 407, 504, 707, 713, 787
AfiI	CCNNNNNNNGG	2 cut(s)	654, 666
AflIII	ACRYGT	2 cut(s)	324, 708
AgeI	ACCGGT	2 cut(s)	447, 1030
AgsI	TTSAA	4 cut(s)	209, 607, 679, 701
AjnI	CCWGG	1 cut(s)	1092
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	3 cut(s)	179, 541, 1043
AluI	AGCT	3 cut(s)	179, 541, 1043
Alw21I	GWGCWC	2 cut(s)	332, 1128
Alw26I	GTCTC	2 cut(s)	72, 418
Alw44I	GTGCAC	1 cut(s)	328
AlwI	GGATC	2 cut(s)	516, 1126
AoxI	GGCC	5 cut(s)	60, 368, 656, 747, 877
ApaLI	GTGCAC	1 cut(s)	328
ApeKI	GCWGC	1 cut(s)	592
ApoI	RAATTY	2 cut(s)	529, 1020
ArsI	GACNNNNNNTTYG	2 cut(s)	966, 998
AsiGI	ACCGGT	2 cut(s)	447, 1030
Asp718I	GGTACC	1 cut(s)	785
AspLEI	GCGC	1 cut(s)	1116
AspS9I	GGNCC	1 cut(s)	657
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	9 cut(s)	34, 138, 197, 203, 388, 734, 778, 947, 1064
AsuII	TTCGAA	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	332
BalI	TGGCCA	2 cut(s)	370, 749
BanI	GGYRCC	1 cut(s)	785
BanII	GRGCYC	1 cut(s)	581
BbrPI	CACGTG	1 cut(s)	776
Bbv12I	GWGCWC	2 cut(s)	332, 1128
BbvI	GCAGC	1 cut(s)	579
BccI	CCATC	6 cut(s)	176, 182, 188, 739, 776, 900
BceAI	ACGGC	2 cut(s)	570, 892
BciT130I	CCWGG	1 cut(s)	1094
BciVI	GTATCC	1 cut(s)	314
BclI	TGATCA	2 cut(s)	514, 1006
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	72, 418
BfaI	CTAG	2 cut(s)	84, 809
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	3 cut(s)	593, 1117, 1120
BlsI	GCNGC	3 cut(s)	594, 1118, 1121
Bme1390I	CCNGG	2 cut(s)	103, 1094
BmgT120I	GGNCC	1 cut(s)	657
BmiI	GGNNCC	1 cut(s)	787
BmrFI	CCNGG	2 cut(s)	103, 1094
BpmI	CTGGAG	2 cut(s)	54, 1065
Bpu14I	TTCGAA	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	103
BsaAI	YACGTR	3 cut(s)	325, 709, 776
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	3 cut(s)	336, 874, 1092
BsaWI	WCCGGW	2 cut(s)	447, 1030
BsaXI	ACNNNNNCTCC	6 cut(s)	309, 339, 873, 903, 1050, 1080
Bsc4I	CCNNNNNNNGG	2 cut(s)	654, 666
Bse118I	RCCGGY	2 cut(s)	447, 1030
Bse1I	ACTGG	6 cut(s)	71, 129, 510, 630, 687, 852
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	1094
BseDI	CCNNGG	3 cut(s)	336, 874, 1092
BseGI	GGATG	4 cut(s)	10, 332, 856, 870
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	2 cut(s)	654, 666
BseNI	ACTGG	6 cut(s)	71, 129, 510, 630, 687, 852
BseRI	GAGGAG	4 cut(s)	909, 953, 956, 1132
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	579
BseYI	CCCAGC	1 cut(s)	537
Bsh1236I	CGCG	2 cut(s)	927, 1122
Bsh1285I	CGRYCG	1 cut(s)	448
BshFI	GGCC	5 cut(s)	62, 370, 658, 749, 879
BshNI	GGYRCC	1 cut(s)	785
BshTI	ACCGGT	2 cut(s)	447, 1030
BsiEI	CGRYCG	1 cut(s)	448
BsiHKAI	GWGCWC	2 cut(s)	332, 1128
BsiSI	CCGG	3 cut(s)	102, 448, 1031
BslI	CCNNNNNNNGG	2 cut(s)	654, 666
BsmAI	GTCTC	2 cut(s)	72, 418
BsnI	GGCC	5 cut(s)	62, 370, 658, 749, 879
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1286I	GDGCHC	3 cut(s)	332, 581, 1128
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	7 cut(s)	508, 514, 724, 865, 1006, 1051, 1131
BspACI	CCGC	3 cut(s)	1117, 1120, 1149
BspANI	GGCC	5 cut(s)	62, 370, 658, 749, 879
BspFNI	CGCG	2 cut(s)	927, 1122
BspHI	TCATGA	1 cut(s)	1186
BspLI	GGNNCC	1 cut(s)	787
BspPI	GGATC	2 cut(s)	516, 1126
BspQI	GCTCTTC	1 cut(s)	1104
BspT104I	TTCGAA	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	785
BsrFI	RCCGGY	2 cut(s)	447, 1030
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	6 cut(s)	71, 129, 510, 630, 687, 852
BssAI	RCCGGY	2 cut(s)	447, 1030
BssECI	CCNNGG	3 cut(s)	336, 874, 1092
BssMI	GATC	7 cut(s)	508, 514, 724, 865, 1006, 1051, 1131
Bst2UI	CCWGG	1 cut(s)	1094
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	2 cut(s)	85, 1104
BstAUI	TGTACA	1 cut(s)	711
BstBAI	YACGTR	3 cut(s)	325, 709, 776
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	1124, 1153
BstDSI	CCRYGG	1 cut(s)	874
BstENI	CCTNNNNNAGG	1 cut(s)	664
BstF5I	GGATG	4 cut(s)	10, 332, 856, 870
BstFNI	CGCG	2 cut(s)	927, 1122
BstHHI	GCGC	1 cut(s)	1116
BstKTI	GATC	7 cut(s)	511, 517, 727, 868, 1009, 1054, 1134
BstMAI	GTCTC	2 cut(s)	72, 418
BstMBI	GATC	7 cut(s)	508, 514, 724, 865, 1006, 1051, 1131
BstMCI	CGRYCG	1 cut(s)	448
BstMWI	GCNNNNNNNGC	1 cut(s)	1161
BstNI	CCWGG	1 cut(s)	1094
BstSCI	CCNGG	2 cut(s)	101, 1092
BstSLI	GKGCMC	1 cut(s)	332
BstUI	CGCG	2 cut(s)	927, 1122
BstV1I	GCAGC	1 cut(s)	579
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	5 cut(s)	62, 370, 658, 749, 879
BtgI	CCRYGG	1 cut(s)	874
BtgZI	GCGATG	1 cut(s)	908
BtsCI	GGATG	4 cut(s)	10, 332, 856, 870
BtsI	GCAGTG	3 cut(s)	94, 205, 521
BtsIMutI	CAGTG	4 cut(s)	94, 205, 521, 694
Cac8I	GCNNGC	2 cut(s)	1124, 1153
CciI	TCATGA	1 cut(s)	1186
CfoI	GCGC	1 cut(s)	1116
Cfr10I	RCCGGY	2 cut(s)	447, 1030
Cfr13I	GGNCC	1 cut(s)	657
CseI	GACGC	1 cut(s)	916
Csp6I	GTAC	6 cut(s)	74, 406, 503, 706, 712, 786
CspAI	ACCGGT	2 cut(s)	447, 1030
CviAII	CATG	1 cut(s)	1187
CviQI	GTAC	6 cut(s)	74, 406, 503, 706, 712, 786
DpnI	GATC	7 cut(s)	510, 516, 726, 867, 1008, 1053, 1133
DpnII	GATC	7 cut(s)	508, 514, 724, 865, 1006, 1051, 1131
EaeI	YGGCCR	4 cut(s)	60, 368, 747, 877
Eam1104I	CTCTTC	2 cut(s)	85, 1104
EarI	CTCTTC	2 cut(s)	85, 1104
Eco24I	GRGCYC	1 cut(s)	581
Eco32I	GATATC	1 cut(s)	771
Eco57I	CTGAAG	1 cut(s)	120
Eco72I	CACGTG	1 cut(s)	776
EcoNI	CCTNNNNNAGG	1 cut(s)	664
EcoO109I	RGGNCCY	1 cut(s)	657
EcoRII	CCWGG	1 cut(s)	1092
EcoRV	GATATC	1 cut(s)	771
EcoT22I	ATGCAT	1 cut(s)	739
EcoT38I	GRGCYC	1 cut(s)	581
FaeI	CATG	1 cut(s)	1190
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FatI	CATG	1 cut(s)	1186
FauNDI	CATATG	1 cut(s)	549
FbaI	TGATCA	2 cut(s)	514, 1006
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	3 cut(s)	593, 1117, 1120
FokI	GGATG	4 cut(s)	17, 319, 857, 863
FriOI	GRGCYC	1 cut(s)	581
Fsp4HI	GCNGC	3 cut(s)	593, 1117, 1120
FspBI	CTAG	2 cut(s)	84, 809
GlaI	GCGC	1 cut(s)	1115
GluI	GCNGC	3 cut(s)	593, 1117, 1120
GsaI	CCCAGC	1 cut(s)	541
GsuI	CTGGAG	2 cut(s)	54, 1065
HaeIII	GGCC	5 cut(s)	62, 370, 658, 749, 879
HapII	CCGG	3 cut(s)	102, 448, 1031
HgaI	GACGC	1 cut(s)	916
HhaI	GCGC	1 cut(s)	1116
Hin1II	CATG	1 cut(s)	1190
Hin6I	GCGC	1 cut(s)	1114
HinP1I	GCGC	1 cut(s)	1114
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HinfI	GANTC	9 cut(s)	45, 55, 65, 140, 544, 587, 897, 974, 996
HpaII	CCGG	3 cut(s)	102, 448, 1031
HphI	GGTGA	9 cut(s)	34, 138, 197, 203, 388, 734, 778, 947, 1064
Hpy166II	GTNNAC	5 cut(s)	76, 276, 330, 712, 714
Hpy188I	TCNGA	4 cut(s)	139, 623, 843, 1199
Hpy188III	TCNNGA	5 cut(s)	293, 512, 809, 931, 1187
Hpy8I	GTNNAC	5 cut(s)	76, 276, 330, 712, 714
Hpy99I	CGWCG	2 cut(s)	932, 1004
HpyAV	CCTTC	5 cut(s)	409, 670, 968, 1001, 1088
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	3 cut(s)	324, 708, 775
HpyCH4V	TGCA	3 cut(s)	330, 737, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1161
HpySE526I	ACGT	3 cut(s)	324, 708, 775
Hsp92II	CATG	1 cut(s)	1190
HspAI	GCGC	1 cut(s)	1114
KpnI	GGTACC	1 cut(s)	789
Ksp22I	TGATCA	2 cut(s)	514, 1006
Kzo9I	GATC	7 cut(s)	508, 514, 724, 865, 1006, 1051, 1131
LguI	GCTCTTC	1 cut(s)	1104
Lsp1109I	GCAGC	1 cut(s)	579
MaeI	CTAG	2 cut(s)	84, 809
MaeII	ACGT	3 cut(s)	324, 708, 775
MaeIII	GTNAC	4 cut(s)	22, 89, 394, 450
MalI	GATC	7 cut(s)	510, 516, 726, 867, 1008, 1053, 1133
MboI	GATC	7 cut(s)	508, 514, 724, 865, 1006, 1051, 1131
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	3 cut(s)	332, 581, 1128
MlsI	TGGCCA	2 cut(s)	370, 749
MluCI	AATT	3 cut(s)	244, 529, 1020
MluNI	TGGCCA	2 cut(s)	370, 749
MlyI	GAGTC	4 cut(s)	64, 74, 149, 891
Mox20I	TGGCCA	2 cut(s)	370, 749
Mph1103I	ATGCAT	1 cut(s)	739
MscI	TGGCCA	2 cut(s)	370, 749
MseI	TTAA	3 cut(s)	429, 468, 653
Msp20I	TGGCCA	2 cut(s)	370, 749
MspA1I	CMGCKG	1 cut(s)	541
MspI	CCGG	3 cut(s)	102, 448, 1031
MspR9I	CCNGG	2 cut(s)	103, 1094
MvaI	CCWGG	1 cut(s)	1094
MvnI	CGCG	2 cut(s)	927, 1122
MwoI	GCNNNNNNNGC	1 cut(s)	1161
NciI	CCSGG	1 cut(s)	103
NdeI	CATATG	1 cut(s)	549
NdeII	GATC	7 cut(s)	508, 514, 724, 865, 1006, 1051, 1131
NlaIII	CATG	1 cut(s)	1190
NlaIV	GGNNCC	1 cut(s)	787
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	3 cut(s)	22, 89, 394
NsiI	ATGCAT	1 cut(s)	739
NspV	TTCGAA	1 cut(s)	43
PagI	TCATGA	1 cut(s)	1186
PciSI	GCTCTTC	1 cut(s)	1104
PcsI	WCGNNNNNNNCGW	3 cut(s)	321, 978, 1168
PfeI	GAWTC	5 cut(s)	45, 544, 587, 974, 996
PinAI	ACCGGT	2 cut(s)	447, 1030
PkrI	GCNGC	3 cut(s)	594, 1118, 1121
PleI	GAGTC	4 cut(s)	63, 73, 148, 891
PmaCI	CACGTG	1 cut(s)	776
PmlI	CACGTG	1 cut(s)	776
PpsI	GAGTC	4 cut(s)	63, 73, 148, 891
Ppu21I	YACGTR	3 cut(s)	325, 709, 776
Psp6I	CCWGG	1 cut(s)	1092
PspCI	CACGTG	1 cut(s)	776
PspFI	CCCAGC	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	1092
PspN4I	GGNNCC	1 cut(s)	787
PspPI	GGNCC	1 cut(s)	657
PsuI	RGATCY	1 cut(s)	508
PvuII	CAGCTG	1 cut(s)	541
RsaI	GTAC	6 cut(s)	75, 407, 504, 707, 713, 787
RsaNI	GTAC	6 cut(s)	74, 406, 503, 706, 712, 786
SalI	GTCGAC	1 cut(s)	274
SapI	GCTCTTC	1 cut(s)	1104
SaqAI	TTAA	3 cut(s)	429, 468, 653
SatI	GCNGC	3 cut(s)	593, 1117, 1120
Sau3AI	GATC	7 cut(s)	508, 514, 724, 865, 1006, 1051, 1131
Sau96I	GGNCC	1 cut(s)	657
SchI	GAGTC	4 cut(s)	64, 74, 149, 891
ScrFI	CCNGG	2 cut(s)	103, 1094
SduI	GDGCHC	3 cut(s)	332, 581, 1128
SfuI	TTCGAA	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	244, 529, 1020
SsiI	CCGC	3 cut(s)	1117, 1120, 1149
SspI	AATATT	1 cut(s)	569
SspMI	CTAG	2 cut(s)	84, 809
StyD4I	CCNGG	2 cut(s)	101, 1092
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	3 cut(s)	327, 711, 778
TaqI	TCGA	9 cut(s)	43, 275, 444, 727, 895, 912, 972, 994, 1024
TaqII	GACCGA	1 cut(s)	328
TasI	AATT	3 cut(s)	244, 529, 1020
TatI	WGTACW	2 cut(s)	73, 711
TauI	GCSGC	2 cut(s)	1119, 1122
TfiI	GAWTC	5 cut(s)	45, 544, 587, 974, 996
Tru1I	TTAA	3 cut(s)	429, 468, 653
Tru9I	TTAA	3 cut(s)	429, 468, 653
TscAI	CASTG	4 cut(s)	94, 205, 528, 694
TseFI	GTSAC	3 cut(s)	22, 89, 394
TseI	GCWGC	1 cut(s)	592
Tsp45I	GTSAC	3 cut(s)	22, 89, 394
TspDTI	ATGAA	4 cut(s)	177, 453, 652, 1091
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	4 cut(s)	94, 205, 528, 694
VneI	GTGCAC	1 cut(s)	328
XagI	CCTNNNNNAGG	1 cut(s)	664
XapI	RAATTY	2 cut(s)	529, 1020
XbaI	TCTAGA	1 cut(s)	808
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	2 cut(s)	84, 809
Zsp2I	ATGCAT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.