Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

61041643 .. 61044291

Gene Structure 2649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG429900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGGTCGACTTCACACGGACTTCCAGAACAAAAGTCAGAAGCATCTTGGGTCATTTGGAGATATGTGTTTTCTTTGTGGCCAGAGGTTGATTGAGCAGTCTGGTGTGACATTTGGGTACATACACAAGGGATTGAGACTTAATAATGATGAAATCGACCGGTTACGCAACACAGACATTAAGAAATCGCTAAATAATAAGAAACTTTATTTGGTACTGGATCTTGATCATACACTGCTAAATTCCACCCAGCTGAATCATATGACGGCTGAAGAAGAATATTTGATCAGCCCACCAGATTCTCTGCCAGATGAGTTGAAAGGCAGCCTGTTCAGACTGGACTTTATGCATATGATGACCAAGTTAAGGCCCTTCATTAGGACATTTTTGAAGGAAGCCAGTGAAATGTTTGAAATGTACGTGTACACTATGGGTGATCGAGCCTATGCATTGGAAATGGCCAAGTTGCTTGATCCCAAAAAAGAGTACTTTGGTGATAGGATGATATCACGCGATGATGGTACCCTAAAACATCAAAATGGTCTAGATATTGTACTTTGGCAAGAAAGTGCTGTTTTGATACCAGATGATACAGAAAATGCATGGATAAAGCACAAGGACAATCTAATTTTGATGGAAAGATATCATTTCTTTAGATCTAATTGTTCCCAATTTGGGTTCACTTGTGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

231

Amino Acids

27.09

Weight (kDa)

5.99

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	70 - 216	4.1e-24	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	7
AccII	CGCG	1 cut(s)	513
AclWI	GGATC	2 cut(s)	228, 467
AcoI	YGGCCR	2 cut(s)	79, 459
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	7 cut(s)	119, 216, 419, 425, 488, 523, 555
AfiI	CCNNNNNNNGG	3 cut(s)	366, 378, 675
AflIII	ACRYGT	1 cut(s)	420
AgeI	ACCGGT	1 cut(s)	159
AgsI	TTSAA	3 cut(s)	319, 391, 413
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	2 cut(s)	228, 467
AoxI	GGCC	3 cut(s)	79, 368, 459
ApeKI	GCWGC	1 cut(s)	324
ApoI	RAATTY	1 cut(s)	241
AsiGI	ACCGGT	1 cut(s)	159
Asp718I	GGTACC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	369
AsuHPI	GGTGA	2 cut(s)	446, 506
BalI	TGGCCA	2 cut(s)	81, 461
BanI	GGYRCC	1 cut(s)	521
BbvI	GCAGC	1 cut(s)	336
BccI	CCATC	2 cut(s)	512, 628
BceAI	ACGGC	1 cut(s)	282
BclI	TGATCA	2 cut(s)	226, 285
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	545
BglII	AGATCT	1 cut(s)	656
BisI	GCNGC	1 cut(s)	325
BlsI	GCNGC	1 cut(s)	326
BmcAI	AGTACT	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	523
BmsI	GCATC	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	421
BsaBI	GATNNNNATC	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 378, 675
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	3 cut(s)	222, 342, 399
Bse8I	GATNNNNATC	1 cut(s)	225
BseGI	GGATG	1 cut(s)	507
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	366, 378, 675
BseNI	ACTGG	3 cut(s)	222, 342, 399
BseXI	GCAGC	1 cut(s)	336
BseYI	CCCAGC	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	513
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	81, 370, 461
BshNI	GGYRCC	1 cut(s)	521
BshTI	ACCGGT	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	160
BslI	CCNNNNNNNGG	3 cut(s)	366, 378, 675
BsmAI	GTCTC	1 cut(s)	130
BsnI	GGCC	3 cut(s)	81, 370, 461
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	6 cut(s)	220, 226, 285, 436, 472, 656
BspANI	GGCC	3 cut(s)	81, 370, 461
BspFNI	CGCG	1 cut(s)	513
BspLI	GGNNCC	1 cut(s)	523
BspPI	GGATC	2 cut(s)	228, 467
BspT107I	GGYRCC	1 cut(s)	521
BsrFI	RCCGGY	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	423
BsrI	ACTGG	3 cut(s)	222, 342, 399
BssAI	RCCGGY	1 cut(s)	159
BssMI	GATC	6 cut(s)	220, 226, 285, 436, 472, 656
BstAUI	TGTACA	1 cut(s)	423
BstBAI	YACGTR	1 cut(s)	421
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	507
BstFNI	CGCG	1 cut(s)	513
BstKTI	GATC	6 cut(s)	223, 229, 288, 439, 475, 659
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	6 cut(s)	220, 226, 285, 436, 472, 656
BstMCI	CGRYCG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	336
BstX2I	RGATCY	2 cut(s)	220, 656
BstYI	RGATCY	2 cut(s)	220, 656
BsuRI	GGCC	3 cut(s)	81, 370, 461
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	507
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	233, 406
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	369
Csp6I	GTAC	7 cut(s)	118, 215, 418, 424, 487, 522, 554
CspAI	ACCGGT	1 cut(s)	159
CviAII	CATG	1 cut(s)	603
CviJI	RGCY	9 cut(s)	81, 253, 269, 291, 327, 370, 398, 443, 461
CviKI_1	RGCY	9 cut(s)	81, 253, 269, 291, 327, 370, 398, 443, 461
CviQI	GTAC	7 cut(s)	118, 215, 418, 424, 487, 522, 554
DpnI	GATC	6 cut(s)	222, 228, 287, 438, 474, 658
DpnII	GATC	6 cut(s)	220, 226, 285, 436, 472, 656
EaeI	YGGCCR	2 cut(s)	79, 459
Eco32I	GATATC	2 cut(s)	507, 644
Eco57I	CTGAAG	1 cut(s)	291
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	369
EcoRV	GATATC	2 cut(s)	507, 644
EcoT22I	ATGCAT	3 cut(s)	351, 451, 604
FaeI	CATG	1 cut(s)	606
FatI	CATG	1 cut(s)	602
FauNDI	CATATG	2 cut(s)	261, 351
FbaI	TGATCA	2 cut(s)	226, 285
FblI	GTMKAC	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	325
FokI	GGATG	1 cut(s)	514
Fsp4HI	GCNGC	1 cut(s)	325
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	1 cut(s)	325
GsaI	CCCAGC	1 cut(s)	253
HaeIII	GGCC	3 cut(s)	81, 370, 461
HapII	CCGG	1 cut(s)	160
Hin1II	CATG	1 cut(s)	606
HincII	GTYRAC	1 cut(s)	8
HindII	GTYRAC	1 cut(s)	8
HinfI	GANTC	2 cut(s)	256, 299
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	2 cut(s)	446, 506
Hpy166II	GTNNAC	4 cut(s)	8, 424, 426, 681
Hpy188I	TCNGA	2 cut(s)	39, 335
Hpy188III	TCNNGA	3 cut(s)	25, 224, 545
Hpy8I	GTNNAC	4 cut(s)	8, 424, 426, 681
HpyAV	CCTTC	2 cut(s)	382, 385
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	3 cut(s)	349, 449, 602
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	1 cut(s)	606
KpnI	GGTACC	1 cut(s)	525
Ksp22I	TGATCA	2 cut(s)	226, 285
Kzo9I	GATC	6 cut(s)	220, 226, 285, 436, 472, 656
Lsp1109I	GCAGC	1 cut(s)	336
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	3 cut(s)	106, 162, 686
MalI	GATC	6 cut(s)	222, 228, 287, 438, 474, 658
MboI	GATC	6 cut(s)	220, 226, 285, 436, 472, 656
MboII	GAAGA	2 cut(s)	284, 287
MflI	RGATCY	2 cut(s)	220, 656
MlsI	TGGCCA	2 cut(s)	81, 461
MluCI	AATT	4 cut(s)	241, 627, 661, 671
MluNI	TGGCCA	2 cut(s)	81, 461
MnlI	CCTC	1 cut(s)	78
Mox20I	TGGCCA	2 cut(s)	81, 461
Mph1103I	ATGCAT	3 cut(s)	351, 451, 604
MscI	TGGCCA	2 cut(s)	81, 461
MseI	TTAA	3 cut(s)	141, 180, 365
MslI	CAYNNNNRTG	1 cut(s)	537
Msp20I	TGGCCA	2 cut(s)	81, 461
MspA1I	CMGCKG	1 cut(s)	253
MspI	CCGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	513
NdeI	CATATG	2 cut(s)	261, 351
NdeII	GATC	6 cut(s)	220, 226, 285, 436, 472, 656
NlaIII	CATG	1 cut(s)	606
NlaIV	GGNNCC	1 cut(s)	523
NmuCI	GTSAC	2 cut(s)	106, 686
NsiI	ATGCAT	3 cut(s)	351, 451, 604
PfeI	GAWTC	2 cut(s)	256, 299
PinAI	ACCGGT	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	326
Ppu21I	YACGTR	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	523
PspPI	GGNCC	1 cut(s)	369
PsuI	RGATCY	2 cut(s)	220, 656
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	7 cut(s)	119, 216, 419, 425, 488, 523, 555
RsaNI	GTAC	7 cut(s)	118, 215, 418, 424, 487, 522, 554
RseI	CAYNNNNRTG	1 cut(s)	537
SalI	GTCGAC	1 cut(s)	6
SaqAI	TTAA	3 cut(s)	141, 180, 365
SatI	GCNGC	1 cut(s)	325
Sau3AI	GATC	6 cut(s)	220, 226, 285, 436, 472, 656
Sau96I	GGNCC	1 cut(s)	369
ScaI	AGTACT	1 cut(s)	488
SetI	ASST	3 cut(s)	89, 255, 423
SfaNI	GCATC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	537
Sse9I	AATT	4 cut(s)	241, 627, 661, 671
SspI	AATATT	1 cut(s)	281
SspMI	CTAG	1 cut(s)	545
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	3 cut(s)	7, 156, 439
TasI	AATT	4 cut(s)	241, 627, 661, 671
TatI	WGTACW	3 cut(s)	423, 486, 553
TfiI	GAWTC	2 cut(s)	256, 299
Tru1I	TTAA	3 cut(s)	141, 180, 365
Tru9I	TTAA	3 cut(s)	141, 180, 365
TscAI	CASTG	2 cut(s)	240, 406
TseFI	GTSAC	2 cut(s)	106, 686
TseI	GCWGC	1 cut(s)	324
Tsp45I	GTSAC	2 cut(s)	106, 686
TspDTI	ATGAA	2 cut(s)	165, 364
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	2 cut(s)	240, 406
XagI	CCTNNNNNAGG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	241
XbaI	TCTAGA	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	7
XspI	CTAG	1 cut(s)	545
ZrmI	AGTACT	1 cut(s)	488
Zsp2I	ATGCAT	3 cut(s)	351, 451, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.