Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

55252898 .. 55258254

Gene Structure 5357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGAGTCTGGCCGAGTCTCCAGTACACTCTTCTAGCATTGATGACTTTGCTGGGTTGCTTGGGAGAGAACTACAGTCCTGTTCTTTGGAGTCATCACCAGGGGATGAAGATGAAGAAGATAAAGAAGCTGATGGTGATGATGATGGCAGTGATGTTGAAACTGAGAGCAGGATAAAAAGGCGCACAGGAGATAATTTGGAACGTGTAGAGGAAACTAATGGGTCGATTTCACAAGGACGTCCGGAACAAAAGTTGATTGAGAAGTCCGGTGTGACATTTGGGTACATACACAAGGGATTGAGACTTAATAATGATGAAATCGACCGGTTATGCAACACAGACATTAAGAAATTGCTAAATAATAAGAAACTTTATTTGGTACTGGATCTTGATCATACACTGCTAAATTCCACCCAGCTGAATCATATGACGGCAGAAGAAGAATATTTGATGAGGCCACCAGATTCGCTGCCAGATGAGTTGAAAGGCAGCCTTTTCAGACTGGACTTTATGTATGTGACGACCAAGTTAAGGCCCTTCGTTAGGACATTTTTGAAGGAAGGCACCTATGCATTGGAAATGGCCAAGTTGCTTGATCCCAAAAAAGAGTACTTTGGTGATAGGGTGATATCACATGATAATGGTACCCAAAATCATCCAAAGGGTCTAGATATTGTGGTTGGGCAAGAAAGTGCTGTTTTGATACTGGATGATACAGAAAATGCATGGATAAAGCACAAGGACAATCTAATTTTGACGGAAAGATATCATTTCTTCAGATCTAGTTGTGCCCAATTTGGGTTCACTTGTGAGTCTCTTTCAGAGTTGAAGAGTGATGAGAGTGAGCCTGAAGGAGCTCTTGCAAATGTTCTTGACCTTCTTAAGCGAATCCACAAGATTTTCTTCTATGAATTGGGAGGCAATTTTATAGATAGAGATGTAAGGCAGGTTCTGAAAACTGTTAGGAAGGAAGTCTTGAAGGGGTGCAAAGTTTTTTTCAGCCGTATAATTCATTTAAAACAGCTGGGAGCCATATGTTCAACCGAAGTGGATTCATCAGTGACCCATGTAGTTGCATTAGATGCAGGAACAGAAAAGTCTCACTGGGCTGTAAATCAAAACAAGTTTTTGGTCCATCCTCTGTGGCTTGAAGCAGCAAATTATATGTTGCGAAAGCAACATGAAGACAGGTGTCCTGTCACTGAAATGAAATCGAAAACCCAAAGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

410

Amino Acids

46.64

Weight (kDa)

5.35

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	125 - 257	1.1e-11	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	937
Acc65I	GGTACC	1 cut(s)	644
AccB1I	GGYRCC	2 cut(s)	563, 644
AccIII	TCCGGA	1 cut(s)	241
AclWI	GGATC	2 cut(s)	393, 590
AcoI	YGGCCR	2 cut(s)	9, 582
AcsI	RAATTY	1 cut(s)	406
AcuI	CTGAAG	2 cut(s)	760, 870
AcyI	GRCGYC	1 cut(s)	238
AfaI	GTAC	5 cut(s)	24, 284, 381, 611, 646
AfiI	CCNNNNNNNGG	3 cut(s)	531, 543, 798
AflII	CTTAAG	1 cut(s)	881
AflIII	ACRYGT	1 cut(s)	202
AgeI	ACCGGT	1 cut(s)	324
AgsI	TTSAA	7 cut(s)	158, 484, 556, 829, 979, 1041, 1151
AjnI	CCWGG	1 cut(s)	97
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	4 cut(s)	128, 418, 857, 1024
AluI	AGCT	4 cut(s)	128, 418, 857, 1024
Alw21I	GWGCWC	1 cut(s)	859
Alw26I	GTCTC	4 cut(s)	21, 295, 819, 1104
AlwI	GGATC	2 cut(s)	393, 590
AlwNI	CAGNNNCTG	1 cut(s)	952
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	4 cut(s)	9, 455, 533, 582
ApeKI	GCWGC	3 cut(s)	469, 489, 1154
ApoI	RAATTY	1 cut(s)	406
AsiGI	ACCGGT	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	644
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	534, 1132
AsuHPI	GGTGA	4 cut(s)	87, 146, 629, 637
AvaII	GGWCC	1 cut(s)	1132
BaeGI	GKGCMC	1 cut(s)	793
BalI	TGGCCA	1 cut(s)	584
BanI	GGYRCC	2 cut(s)	563, 644
BanII	GRGCYC	1 cut(s)	859
BbsI	GAAGAC	1 cut(s)	1191
Bbv12I	GWGCWC	1 cut(s)	859
BbvI	GCAGC	3 cut(s)	456, 501, 1166
BccI	CCATC	3 cut(s)	125, 137, 1143
BceAI	ACGGC	2 cut(s)	447, 987
BciT130I	CCWGG	1 cut(s)	99
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	4 cut(s)	21, 295, 819, 1104
BfaI	CTAG	3 cut(s)	33, 668, 783
BfmI	CTRYAG	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	881
BfuAI	ACCTGC	1 cut(s)	937
BglII	AGATCT	1 cut(s)	779
BisI	GCNGC	3 cut(s)	470, 490, 1155
BlsI	GCNGC	3 cut(s)	471, 491, 1156
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	1132
BmgT120I	GGNCC	2 cut(s)	534, 1132
BmiI	GGNNCC	3 cut(s)	565, 646, 1030
BmrFI	CCNGG	1 cut(s)	99
BmrI	ACTGGG	1 cut(s)	1114
BmsI	GCATC	1 cut(s)	1072
BmuI	ACTGGG	1 cut(s)	1114
BoxI	GACNNNNGTC	1 cut(s)	1191
BpiI	GAAGAC	1 cut(s)	1191
BsaBI	GATNNNNATC	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	98
BsaWI	WCCGGW	3 cut(s)	241, 266, 324
Bsc4I	CCNNNNNNNGG	3 cut(s)	531, 543, 798
Bse118I	RCCGGY	1 cut(s)	324
Bse1I	ACTGG	6 cut(s)	20, 387, 507, 711, 1109, 1228
Bse8I	GATNNNNATC	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	4 cut(s)	109, 655, 715, 1135
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	3 cut(s)	531, 543, 798
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	6 cut(s)	20, 387, 507, 711, 1109, 1228
BseSI	GKGCMC	1 cut(s)	793
BseXI	GCAGC	3 cut(s)	456, 501, 1166
BseYI	CCCAGC	3 cut(s)	50, 414, 1024
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	4 cut(s)	11, 457, 535, 584
BshNI	GGYRCC	2 cut(s)	563, 644
BshTI	ACCGGT	1 cut(s)	324
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	859
BsiSI	CCGG	3 cut(s)	242, 267, 325
BslI	CCNNNNNNNGG	3 cut(s)	531, 543, 798
BsmAI	GTCTC	4 cut(s)	21, 295, 819, 1104
BsnI	GGCC	4 cut(s)	11, 457, 535, 584
Bsp1286I	GDGCHC	2 cut(s)	793, 859
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	4 cut(s)	385, 391, 595, 779
BspANI	GGCC	4 cut(s)	11, 457, 535, 584
BspCNI	CTCAG	1 cut(s)	154
BspEI	TCCGGA	1 cut(s)	241
BspLI	GGNNCC	3 cut(s)	565, 646, 1030
BspMI	ACCTGC	1 cut(s)	937
BspPI	GGATC	2 cut(s)	393, 590
BspT107I	GGYRCC	2 cut(s)	563, 644
BspTI	CTTAAG	1 cut(s)	881
BsrFI	RCCGGY	1 cut(s)	324
BsrI	ACTGG	6 cut(s)	20, 387, 507, 711, 1109, 1228
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	4 cut(s)	385, 391, 595, 779
BssNI	GRCGYC	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	75, 961
Bst6I	CTCTTC	2 cut(s)	34, 824
BstACI	GRCGYC	1 cut(s)	238
BstAFI	CTTAAG	1 cut(s)	881
BstAPI	GCANNNNNTGC	1 cut(s)	1082
BstDEI	CTNAG	1 cut(s)	162
BstENI	CCTNNNNNAGG	1 cut(s)	541
BstF5I	GGATG	4 cut(s)	109, 655, 715, 1135
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	4 cut(s)	388, 394, 598, 782
BstMAI	GTCTC	4 cut(s)	21, 295, 819, 1104
BstMBI	GATC	4 cut(s)	385, 391, 595, 779
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	1 cut(s)	1082
BstNI	CCWGG	1 cut(s)	99
BstPAI	GACNNNNGTC	1 cut(s)	1191
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	793
BstV1I	GCAGC	3 cut(s)	456, 501, 1166
BstV2I	GAAGAC	1 cut(s)	1191
BstX2I	RGATCY	2 cut(s)	385, 779
BstYI	RGATCY	2 cut(s)	385, 779
BsuRI	GGCC	4 cut(s)	11, 457, 535, 584
BtsCI	GGATG	4 cut(s)	109, 655, 715, 1135
BtsI	GCAGTG	2 cut(s)	154, 398
BtsIMutI	CAGTG	5 cut(s)	154, 398, 1065, 1102, 1200
BveI	ACCTGC	1 cut(s)	937
CaiI	CAGNNNCTG	1 cut(s)	952
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	534, 1132
Csp6I	GTAC	5 cut(s)	23, 283, 380, 610, 645
CspAI	ACCGGT	1 cut(s)	324
CspCI	CAANNNNNGTGG	2 cut(s)	1029, 1064
CviAII	CATG	4 cut(s)	635, 726, 1067, 1181
CviQI	GTAC	5 cut(s)	23, 283, 380, 610, 645
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	4 cut(s)	387, 393, 597, 781
DpnII	GATC	4 cut(s)	385, 391, 595, 779
DraI	TTTAAA	1 cut(s)	1017
EaeI	YGGCCR	2 cut(s)	9, 582
Eam1104I	CTCTTC	2 cut(s)	34, 824
EarI	CTCTTC	2 cut(s)	34, 824
Ecl136II	GAGCTC	1 cut(s)	857
Eco24I	GRGCYC	1 cut(s)	859
Eco32I	GATATC	2 cut(s)	630, 767
Eco47I	GGWCC	1 cut(s)	1132
Eco53kI	GAGCTC	1 cut(s)	857
Eco57I	CTGAAG	2 cut(s)	760, 870
EcoICRI	GAGCTC	1 cut(s)	857
EcoNI	CCTNNNNNAGG	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	97
EcoRV	GATATC	2 cut(s)	630, 767
EcoT22I	ATGCAT	2 cut(s)	574, 727
EcoT38I	GRGCYC	1 cut(s)	859
FaeI	CATG	4 cut(s)	638, 729, 1070, 1184
FalI	AAGNNNNNCTT	8 cut(s)	477, 509, 843, 875, 887, 919, 959, 991
FatI	CATG	4 cut(s)	634, 725, 1066, 1180
FauNDI	CATATG	2 cut(s)	426, 1034
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	470, 490, 1155
FokI	GGATG	4 cut(s)	116, 642, 722, 1122
FriOI	GRGCYC	1 cut(s)	859
Fsp4HI	GCNGC	3 cut(s)	470, 490, 1155
FspBI	CTAG	3 cut(s)	33, 668, 783
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	3 cut(s)	470, 490, 1155
GsaI	CCCAGC	3 cut(s)	54, 418, 1028
HaeIII	GGCC	4 cut(s)	11, 457, 535, 584
HapII	CCGG	3 cut(s)	242, 267, 325
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	238
Hin1II	CATG	4 cut(s)	638, 729, 1070, 1184
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	8 cut(s)	4, 14, 89, 421, 464, 812, 888, 1052
HpaII	CCGG	3 cut(s)	242, 267, 325
HphI	GGTGA	4 cut(s)	87, 146, 629, 637
Hpy166II	GTNNAC	2 cut(s)	25, 804
Hpy188I	TCNGA	4 cut(s)	500, 779, 823, 954
Hpy188III	TCNNGA	5 cut(s)	242, 389, 668, 872, 976
Hpy8I	GTNNAC	2 cut(s)	25, 804
HpyAV	CCTTC	7 cut(s)	547, 550, 554, 845, 887, 961, 973
HpyCH4III	ACNGT	2 cut(s)	75, 961
HpyCH4IV	ACGT	2 cut(s)	202, 238
HpyCH4V	TGCA	7 cut(s)	333, 572, 725, 863, 987, 1076, 1085
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1082
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	2 cut(s)	202, 238
Hsp92I	GRCGYC	1 cut(s)	238
Hsp92II	CATG	4 cut(s)	638, 729, 1070, 1184
HspAI	GCGC	1 cut(s)	181
Kpn2I	TCCGGA	1 cut(s)	241
KpnI	GGTACC	1 cut(s)	648
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	385, 391, 595, 779
LmnI	GCTCC	2 cut(s)	854, 1028
Lsp1109I	GCAGC	3 cut(s)	456, 501, 1166
LweI	GCATC	1 cut(s)	1072
MaeI	CTAG	3 cut(s)	33, 668, 783
MaeII	ACGT	2 cut(s)	202, 238
MaeIII	GTNAC	4 cut(s)	271, 517, 1060, 1198
MalI	GATC	4 cut(s)	387, 393, 597, 781
MboI	GATC	4 cut(s)	385, 391, 595, 779
MflI	RGATCY	2 cut(s)	385, 779
MhlI	GDGCHC	2 cut(s)	793, 859
MlsI	TGGCCA	1 cut(s)	584
MluCI	AATT	9 cut(s)	193, 350, 406, 750, 794, 911, 922, 1008, 1159
MluNI	TGGCCA	1 cut(s)	584
MlyI	GAGTC	4 cut(s)	13, 23, 98, 821
MnlI	CCTC	4 cut(s)	202, 447, 911, 1149
Mox20I	TGGCCA	1 cut(s)	584
Mph1103I	ATGCAT	2 cut(s)	574, 727
MroI	TCCGGA	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	584
MseI	TTAA	5 cut(s)	306, 345, 530, 882, 1016
MslI	CAYNNNNRTG	2 cut(s)	639, 1205
Msp20I	TGGCCA	1 cut(s)	584
MspA1I	CMGCKG	2 cut(s)	418, 1024
MspCI	CTTAAG	1 cut(s)	881
MspI	CCGG	3 cut(s)	242, 267, 325
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	1082
NdeI	CATATG	2 cut(s)	426, 1034
NdeII	GATC	4 cut(s)	385, 391, 595, 779
NlaIII	CATG	4 cut(s)	638, 729, 1070, 1184
NlaIV	GGNNCC	3 cut(s)	565, 646, 1030
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	4 cut(s)	271, 517, 1060, 1198
NsiI	ATGCAT	2 cut(s)	574, 727
PfeI	GAWTC	4 cut(s)	421, 464, 888, 1052
PinAI	ACCGGT	1 cut(s)	324
PkrI	GCNGC	3 cut(s)	471, 491, 1156
PleI	GAGTC	4 cut(s)	12, 22, 97, 820
PpsI	GAGTC	4 cut(s)	12, 22, 97, 820
PshAI	GACNNNNGTC	1 cut(s)	1191
Psp124BI	GAGCTC	1 cut(s)	859
Psp6I	CCWGG	1 cut(s)	97
PspFI	CCCAGC	3 cut(s)	50, 414, 1024
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	3 cut(s)	565, 646, 1030
PspPI	GGNCC	2 cut(s)	534, 1132
PsrI	GAACNNNNNNTAC	2 cut(s)	933, 965
PstNI	CAGNNNCTG	1 cut(s)	952
PsuI	RGATCY	2 cut(s)	385, 779
PvuII	CAGCTG	2 cut(s)	418, 1024
RsaI	GTAC	5 cut(s)	24, 284, 381, 611, 646
RsaNI	GTAC	5 cut(s)	23, 283, 380, 610, 645
RseI	CAYNNNNRTG	2 cut(s)	639, 1205
SacI	GAGCTC	1 cut(s)	859
SaqAI	TTAA	5 cut(s)	306, 345, 530, 882, 1016
SatI	GCNGC	3 cut(s)	470, 490, 1155
Sau3AI	GATC	4 cut(s)	385, 391, 595, 779
Sau96I	GGNCC	2 cut(s)	534, 1132
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	4 cut(s)	13, 23, 98, 821
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	793, 859
SfaNI	GCATC	1 cut(s)	1072
SfcI	CTRYAG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	1132
SmiMI	CAYNNNNRTG	2 cut(s)	639, 1205
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
Sse9I	AATT	9 cut(s)	193, 350, 406, 750, 794, 911, 922, 1008, 1159
SspI	AATATT	1 cut(s)	446
SspMI	CTAG	3 cut(s)	33, 668, 783
SstI	GAGCTC	1 cut(s)	859
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	75, 961
TaiI	ACGT	2 cut(s)	205, 241
TaqI	TCGA	3 cut(s)	224, 321, 1214
TasI	AATT	9 cut(s)	193, 350, 406, 750, 794, 911, 922, 1008, 1159
TatI	WGTACW	2 cut(s)	22, 609
TfiI	GAWTC	4 cut(s)	421, 464, 888, 1052
Tru1I	TTAA	5 cut(s)	306, 345, 530, 882, 1016
Tru9I	TTAA	5 cut(s)	306, 345, 530, 882, 1016
TscAI	CASTG	5 cut(s)	154, 405, 1065, 1109, 1207
TseFI	GTSAC	4 cut(s)	271, 517, 1060, 1198
TseI	GCWGC	3 cut(s)	469, 489, 1154
Tsp45I	GTSAC	4 cut(s)	271, 517, 1060, 1198
TspDTI	ATGAA	8 cut(s)	120, 126, 330, 924, 1001, 1044, 1197, 1223
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	5 cut(s)	154, 405, 1065, 1109, 1207
Vha464I	CTTAAG	1 cut(s)	881
VpaK11BI	GGWCC	1 cut(s)	1132
XagI	CCTNNNNNAGG	1 cut(s)	541
XapI	RAATTY	1 cut(s)	406
XbaI	TCTAGA	1 cut(s)	667
XspI	CTAG	3 cut(s)	33, 668, 783
ZraI	GACGTC	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	611
Zsp2I	ATGCAT	2 cut(s)	574, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.