Rw7G036600

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
55341654 .. 55346656
5003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G036600.1

Sequence Viewer

Length: 1020 bp
ATGTCTCACACTCTGATGGATGAGAACGCTCAAACGGTGACTAATCACCACGCCTTTCAAATCTCAAAGCATCTTGGATCATTTGGAGATATGTGTTTTCTTTGTGGCCAGAGGTTGATTGAGCAGTCTGGTGTGACATTTGGGTACATACACAAGGGATTGAGACTTAATAATGATGAAATCGACCGGTTATGCAACACAGACATTAAGAAATCGCTAAATAATAAGAAACTTTATTTGGTACTGGATCTTGATCATACACTGCTAAATTCCACCCAGCTGAATCATATGACGGCTGAAGAAGAATATTTGATCAGCCCACCAGATTCTCTGCCAGATGAGTTGAAAGGCAGCCTGTTCAGACTGGACTTTATGCATATGATGACCAAGTTAAGGCCCTTCATTAGGACATTTTTGAAGGAAGCCAGTGAAATGTTTGAAATGTACGTGTACACTATGGGTGATCGAGCCTATGCATTGGAAATGGCCAAGTTGCTTGATCCCAAAAAAGAGTACTTTGGTGATAGGATGATATCACGCGATGATGGTACCCTAAAACATCAAAATGGTCTAGATATTGTACTTTGGCAAGAAAGTGCTGTTTTGATACCGGATGATACAGAAAATGCATGGATAAAGCAAAAGGACAATCTAATTTTGATGGAAAGATATCATTTCTTTAGATCTAATTGTTCCCAATTTGGGTTCACTTGTGAGTCTCTTTCAGAGTTGAAGAGTGATGAGAGTGAGCCTGAAGGAGCTCTTGCAAATGTTCTTGACCTTCTGAAGCGAATCCACAAGATTTTCTTTTATGAATTGGGAGGCAATCTTATATATAGAGACGTAAGGCAGGTTCTGAAAACTGTTAGGAAGGAAGTCTTGAAGGGGTGCAAAGTTGTGTTCAGCCGTATAATTCCTTCAAAAGTCCAGGCTGATAATCATCACCCGTGGAAGATGGCGGAGCAGCAAATTATATGTGGCGAAAGCAACCTGAAGACAAGTTTCCTGTCACTGAAATGA

Protein Analysis

339

Amino Acids

39.29

Weight (kDa)

6.24

Isoelectric Point (pI)

32.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 79 - 226 5.2e-24 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000221)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58003 AT5G58003 AT5G58003
fragaria_vesca FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica MD09G1131300.v1.1
prunus_persica Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis pycom09g05350
rosa_chinensis RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 841
Acc65I GGTACC 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 548
AccII CGCG 1 cut(s) 540
AciI CCGC 1 cut(s) 959
AclWI GGATC 3 cut(s) 85, 255, 494
AcoI YGGCCR 2 cut(s) 106, 486
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 4 cut(s) 318, 774, 806, 1013
AfaI GTAC 7 cut(s) 146, 243, 446, 452, 515, 550, 582
AfiI CCNNNNNNNGG 3 cut(s) 393, 405, 702
AflIII ACRYGT 1 cut(s) 447
AgeI ACCGGT 1 cut(s) 186
AgsI TTSAA 7 cut(s) 59, 346, 418, 440, 733, 883, 921
AjnI CCWGG 1 cut(s) 927
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 2 cut(s) 280, 761
AluI AGCT 2 cut(s) 280, 761
Alw21I GWGCWC 1 cut(s) 763
Alw26I GTCTC 4 cut(s) 9, 157, 723, 834
AlwI GGATC 3 cut(s) 85, 255, 494
AlwNI CAGNNNCTG 1 cut(s) 856
AoxI GGCC 3 cut(s) 106, 395, 486
ApeKI GCWGC 2 cut(s) 351, 964
ApoI RAATTY 1 cut(s) 268
AsiGI ACCGGT 1 cut(s) 186
Asp718I GGTACC 1 cut(s) 548
AspS9I GGNCC 1 cut(s) 396
AsuHPI GGTGA 5 cut(s) 38, 49, 473, 533, 935
BalI TGGCCA 2 cut(s) 108, 488
BanI GGYRCC 1 cut(s) 548
BanII GRGCYC 1 cut(s) 763
BarI GAAGNNNNNNTAC 2 cut(s) 901, 933
BbsI GAAGAC 1 cut(s) 1001
Bbv12I GWGCWC 1 cut(s) 763
BbvI GCAGC 2 cut(s) 363, 976
BccI CCATC 4 cut(s) 10, 539, 655, 949
BceAI ACGGC 2 cut(s) 309, 891
BciT130I CCWGG 1 cut(s) 929
BclI TGATCA 2 cut(s) 253, 312
BcoDI GTCTC 4 cut(s) 9, 157, 723, 834
BfaI CTAG 1 cut(s) 572
BfuAI ACCTGC 1 cut(s) 841
BglII AGATCT 1 cut(s) 683
BisI GCNGC 2 cut(s) 352, 965
BlsI GCNGC 2 cut(s) 353, 966
BmcAI AGTACT 1 cut(s) 515
Bme1390I CCNGG 1 cut(s) 929
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 1 cut(s) 550
BmrFI CCNGG 1 cut(s) 929
BmsI GCATC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 1001
BsaAI YACGTR 1 cut(s) 448
BsaBI GATNNNNATC 2 cut(s) 252, 939
BsaJI CCNNGG 1 cut(s) 947
BsaWI WCCGGW 2 cut(s) 186, 610
Bsc4I CCNNNNNNNGG 3 cut(s) 393, 405, 702
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 3 cut(s) 249, 369, 426
Bse8I GATNNNNATC 2 cut(s) 252, 939
BseBI CCWGG 1 cut(s) 929
BseDI CCNNGG 1 cut(s) 947
BseGI GGATG 3 cut(s) 25, 534, 619
BseJI GATNNNNATC 2 cut(s) 252, 939
BseLI CCNNNNNNNGG 3 cut(s) 393, 405, 702
BseNI ACTGG 3 cut(s) 249, 369, 426
BseXI GCAGC 2 cut(s) 363, 976
BseYI CCCAGC 1 cut(s) 276
Bsh1236I CGCG 1 cut(s) 540
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 3 cut(s) 108, 397, 488
BshNI GGYRCC 1 cut(s) 548
BshTI ACCGGT 1 cut(s) 186
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 763
BsiSI CCGG 2 cut(s) 187, 611
BslI CCNNNNNNNGG 3 cut(s) 393, 405, 702
BsmAI GTCTC 4 cut(s) 9, 157, 723, 834
BsmBI CGTCTC 1 cut(s) 834
BsnI GGCC 3 cut(s) 108, 397, 488
Bsp1286I GDGCHC 1 cut(s) 763
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 7 cut(s) 77, 247, 253, 312, 463, 499, 683
BspACI CCGC 1 cut(s) 959
BspANI GGCC 3 cut(s) 108, 397, 488
BspFNI CGCG 1 cut(s) 540
BspLI GGNNCC 1 cut(s) 550
BspMI ACCTGC 1 cut(s) 841
BspPI GGATC 3 cut(s) 85, 255, 494
BspT107I GGYRCC 1 cut(s) 548
BsrFI RCCGGY 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 3 cut(s) 249, 369, 426
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 947
BssMI GATC 7 cut(s) 77, 247, 253, 312, 463, 499, 683
Bst2UI CCWGG 1 cut(s) 929
Bst4CI ACNGT 2 cut(s) 37, 865
Bst6I CTCTTC 1 cut(s) 728
BstAUI TGTACA 1 cut(s) 450
BstBAI YACGTR 1 cut(s) 448
BstDSI CCRYGG 1 cut(s) 947
BstENI CCTNNNNNAGG 1 cut(s) 403
BstF5I GGATG 3 cut(s) 25, 534, 619
BstFNI CGCG 1 cut(s) 540
BstKTI GATC 7 cut(s) 80, 250, 256, 315, 466, 502, 686
BstMAI GTCTC 4 cut(s) 9, 157, 723, 834
BstMBI GATC 7 cut(s) 77, 247, 253, 312, 463, 499, 683
BstMCI CGRYCG 1 cut(s) 187
BstNI CCWGG 1 cut(s) 929
BstSCI CCNGG 1 cut(s) 927
BstUI CGCG 1 cut(s) 540
BstV1I GCAGC 2 cut(s) 363, 976
BstV2I GAAGAC 1 cut(s) 1001
BstX2I RGATCY 2 cut(s) 247, 683
BstYI RGATCY 2 cut(s) 247, 683
BsuRI GGCC 3 cut(s) 108, 397, 488
BtgI CCRYGG 1 cut(s) 947
BtgZI GCGATG 1 cut(s) 555
BtsCI GGATG 3 cut(s) 25, 534, 619
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 3 cut(s) 260, 433, 1010
BveI ACCTGC 1 cut(s) 841
CaiI CAGNNNCTG 1 cut(s) 856
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 7 cut(s) 145, 242, 445, 451, 514, 549, 581
CspAI ACCGGT 1 cut(s) 186
CviAII CATG 1 cut(s) 630
CviQI GTAC 7 cut(s) 145, 242, 445, 451, 514, 549, 581
DpnI GATC 7 cut(s) 79, 249, 255, 314, 465, 501, 685
DpnII GATC 7 cut(s) 77, 247, 253, 312, 463, 499, 683
EaeI YGGCCR 2 cut(s) 106, 486
Eam1104I CTCTTC 1 cut(s) 728
EarI CTCTTC 1 cut(s) 728
EciI GGCGGA 1 cut(s) 974
Ecl136II GAGCTC 1 cut(s) 761
Eco24I GRGCYC 1 cut(s) 763
Eco32I GATATC 2 cut(s) 534, 671
Eco53kI GAGCTC 1 cut(s) 761
Eco57I CTGAAG 4 cut(s) 318, 774, 806, 1013
EcoICRI GAGCTC 1 cut(s) 761
EcoNI CCTNNNNNAGG 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 927
EcoRV GATATC 2 cut(s) 534, 671
EcoT22I ATGCAT 3 cut(s) 378, 478, 631
EcoT38I GRGCYC 1 cut(s) 763
Esp3I CGTCTC 1 cut(s) 834
FaeI CATG 1 cut(s) 633
FalI AAGNNNNNCTT 6 cut(s) 747, 779, 791, 823, 863, 895
FatI CATG 1 cut(s) 629
FauNDI CATATG 2 cut(s) 288, 378
FbaI TGATCA 2 cut(s) 253, 312
Fnu4HI GCNGC 2 cut(s) 352, 965
FokI GGATG 3 cut(s) 32, 541, 626
FriOI GRGCYC 1 cut(s) 763
Fsp4HI GCNGC 2 cut(s) 352, 965
FspBI CTAG 1 cut(s) 572
GluI GCNGC 2 cut(s) 352, 965
GsaI CCCAGC 1 cut(s) 280
HaeIII GGCC 3 cut(s) 108, 397, 488
HapII CCGG 2 cut(s) 187, 611
Hin1II CATG 1 cut(s) 633
HinfI GANTC 4 cut(s) 283, 326, 716, 792
HpaII CCGG 2 cut(s) 187, 611
HphI GGTGA 5 cut(s) 38, 49, 473, 533, 935
Hpy166II GTNNAC 3 cut(s) 451, 453, 708
Hpy188I TCNGA 5 cut(s) 15, 362, 727, 786, 858
Hpy188III TCNNGA 4 cut(s) 251, 572, 776, 880
Hpy8I GTNNAC 3 cut(s) 451, 453, 708
HpyAV CCTTC 7 cut(s) 409, 412, 749, 791, 865, 877, 927
HpyCH4III ACNGT 2 cut(s) 37, 865
HpyCH4IV ACGT 2 cut(s) 447, 843
HpyCH4V TGCA 6 cut(s) 195, 376, 476, 629, 767, 891
HpySE526I ACGT 2 cut(s) 447, 843
Hsp92II CATG 1 cut(s) 633
KpnI GGTACC 1 cut(s) 552
Ksp22I TGATCA 2 cut(s) 253, 312
Kzo9I GATC 7 cut(s) 77, 247, 253, 312, 463, 499, 683
LmnI GCTCC 2 cut(s) 758, 961
Lsp1109I GCAGC 2 cut(s) 363, 976
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 572
MaeII ACGT 2 cut(s) 447, 843
MaeIII GTNAC 3 cut(s) 37, 133, 1008
MalI GATC 7 cut(s) 79, 249, 255, 314, 465, 501, 685
MboI GATC 7 cut(s) 77, 247, 253, 312, 463, 499, 683
MboII GAAGA 5 cut(s) 311, 314, 745, 964, 1006
MflI RGATCY 2 cut(s) 247, 683
MhlI GDGCHC 1 cut(s) 763
MlsI TGGCCA 2 cut(s) 108, 488
MluCI AATT 7 cut(s) 268, 654, 688, 698, 815, 912, 969
MluNI TGGCCA 2 cut(s) 108, 488
MlyI GAGTC 1 cut(s) 725
MnlI CCTC 2 cut(s) 105, 815
Mox20I TGGCCA 2 cut(s) 108, 488
Mph1103I ATGCAT 3 cut(s) 378, 478, 631
MscI TGGCCA 2 cut(s) 108, 488
MseI TTAA 3 cut(s) 168, 207, 392
MslI CAYNNNNRTG 3 cut(s) 14, 564, 1015
Msp20I TGGCCA 2 cut(s) 108, 488
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 2 cut(s) 187, 611
MspR9I CCNGG 1 cut(s) 929
MvaI CCWGG 1 cut(s) 929
MvnI CGCG 1 cut(s) 540
NdeI CATATG 2 cut(s) 288, 378
NdeII GATC 7 cut(s) 77, 247, 253, 312, 463, 499, 683
NlaIII CATG 1 cut(s) 633
NlaIV GGNNCC 1 cut(s) 550
NmuCI GTSAC 3 cut(s) 37, 133, 1008
NsiI ATGCAT 3 cut(s) 378, 478, 631
PfeI GAWTC 3 cut(s) 283, 326, 792
PinAI ACCGGT 1 cut(s) 186
PkrI GCNGC 2 cut(s) 353, 966
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
Ppu21I YACGTR 1 cut(s) 448
Psp124BI GAGCTC 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 927
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 1 cut(s) 927
PspN4I GGNNCC 1 cut(s) 550
PspPI GGNCC 1 cut(s) 396
PsrI GAACNNNNNNTAC 2 cut(s) 837, 869
PstNI CAGNNNCTG 1 cut(s) 856
PsuI RGATCY 2 cut(s) 247, 683
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 7 cut(s) 146, 243, 446, 452, 515, 550, 582
RsaNI GTAC 7 cut(s) 145, 242, 445, 451, 514, 549, 581
RseI CAYNNNNRTG 3 cut(s) 14, 564, 1015
SacI GAGCTC 1 cut(s) 763
SaqAI TTAA 3 cut(s) 168, 207, 392
SatI GCNGC 2 cut(s) 352, 965
Sau3AI GATC 7 cut(s) 77, 247, 253, 312, 463, 499, 683
Sau96I GGNCC 1 cut(s) 396
ScaI AGTACT 1 cut(s) 515
SchI GAGTC 1 cut(s) 725
ScrFI CCNGG 1 cut(s) 929
SduI GDGCHC 1 cut(s) 763
SetI ASST 8 cut(s) 116, 282, 450, 763, 783, 846, 855, 993
SfaNI GCATC 1 cut(s) 79
SmiMI CAYNNNNRTG 3 cut(s) 14, 564, 1015
Sse9I AATT 7 cut(s) 268, 654, 688, 698, 815, 912, 969
SsiI CCGC 1 cut(s) 959
SspI AATATT 1 cut(s) 308
SspMI CTAG 1 cut(s) 572
SstI GAGCTC 1 cut(s) 763
StyD4I CCNGG 1 cut(s) 927
TaaI ACNGT 2 cut(s) 37, 865
TaiI ACGT 2 cut(s) 450, 846
TaqI TCGA 2 cut(s) 183, 466
TasI AATT 7 cut(s) 268, 654, 688, 698, 815, 912, 969
TatI WGTACW 3 cut(s) 450, 513, 580
TfiI GAWTC 3 cut(s) 283, 326, 792
Tru1I TTAA 3 cut(s) 168, 207, 392
Tru9I TTAA 3 cut(s) 168, 207, 392
TscAI CASTG 3 cut(s) 267, 433, 1017
TseFI GTSAC 3 cut(s) 37, 133, 1008
TseI GCWGC 2 cut(s) 351, 964
Tsp45I GTSAC 3 cut(s) 37, 133, 1008
TspDTI ATGAA 3 cut(s) 192, 391, 828
TspRI CASTG 3 cut(s) 267, 433, 1017
XagI CCTNNNNNAGG 1 cut(s) 403
XapI RAATTY 1 cut(s) 268
XbaI TCTAGA 1 cut(s) 571
XspI CTAG 1 cut(s) 572
ZrmI AGTACT 1 cut(s) 515
Zsp2I ATGCAT 3 cut(s) 378, 478, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.