RNA polymerase II C-terminal domain phosphatase-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 1046 |
| AclWI | GGATC | 4 cut(s) | 563, 670, 921, 1089 |
| AcsI | RAATTY | 3 cut(s) | 246, 337, 1189 |
| AcuI | CTGAAG | 1 cut(s) | 1233 |
| AcvI | CACGTG | 1 cut(s) | 1099 |
| AdeI | CACNNNGTG | 1 cut(s) | 427 |
| AfaI | GTAC | 4 cut(s) | 212, 312, 442, 1014 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 462, 958 |
| AflIII | ACRYGT | 2 cut(s) | 415, 1096 |
| AgsI | TTSAA | 6 cut(s) | 382, 857, 946, 970, 1008, 1071 |
| AjiI | CACGTC | 1 cut(s) | 931 |
| AjnI | CCWGG | 2 cut(s) | 185, 714 |
| AluBI | AGCT | 4 cut(s) | 494, 511, 836, 1061 |
| AluI | AGCT | 4 cut(s) | 494, 511, 836, 1061 |
| Alw21I | GWGCWC | 1 cut(s) | 620 |
| Alw26I | GTCTC | 5 cut(s) | 22, 134, 531, 921, 1096 |
| AlwI | GGATC | 4 cut(s) | 563, 670, 921, 1089 |
| Ama87I | CYCGRG | 1 cut(s) | 657 |
| AoxI | GGCC | 2 cut(s) | 464, 775 |
| ApeKI | GCWGC | 1 cut(s) | 1106 |
| ApoI | RAATTY | 3 cut(s) | 246, 337, 1189 |
| AspLEI | GCGC | 1 cut(s) | 547 |
| AsuC2I | CCSGG | 1 cut(s) | 438 |
| AsuHPI | GGTGA | 3 cut(s) | 89, 354, 1174 |
| AvaI | CYCGRG | 1 cut(s) | 657 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 885, 917 |
| BbrPI | CACGTG | 1 cut(s) | 1099 |
| BbsI | GAAGAC | 3 cut(s) | 183, 389, 1221 |
| Bbv12I | GWGCWC | 1 cut(s) | 620 |
| BbvI | GCAGC | 1 cut(s) | 1118 |
| BccI | CCATC | 1 cut(s) | 1036 |
| BciT130I | CCWGG | 2 cut(s) | 187, 716 |
| BclI | TGATCA | 1 cut(s) | 400 |
| BcnI | CCSGG | 1 cut(s) | 438 |
| BcoDI | GTCTC | 5 cut(s) | 22, 134, 531, 921, 1096 |
| BfaI | CTAG | 6 cut(s) | 101, 320, 495, 641, 759, 1116 |
| BglII | AGATCT | 1 cut(s) | 755 |
| BisI | GCNGC | 1 cut(s) | 1107 |
| BlsI | GCNGC | 1 cut(s) | 1108 |
| BmcAI | AGTACT | 1 cut(s) | 312 |
| Bme1390I | CCNGG | 3 cut(s) | 187, 438, 716 |
| BmeT110I | CYCGRG | 1 cut(s) | 657 |
| BmgBI | CACGTC | 1 cut(s) | 931 |
| BmrFI | CCNGG | 3 cut(s) | 187, 438, 716 |
| BmsI | GCATC | 2 cut(s) | 888, 1102 |
| BpiI | GAAGAC | 3 cut(s) | 183, 389, 1221 |
| BpmI | CTGGAG | 2 cut(s) | 216, 938 |
| Bpu10I | CCTNAGC | 1 cut(s) | 226 |
| BpuEI | CTTGAG | 1 cut(s) | 44 |
| BpuMI | CCSGG | 1 cut(s) | 438 |
| BsaAI | YACGTR | 2 cut(s) | 608, 1099 |
| BsaJI | CCNNGG | 1 cut(s) | 525 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 34 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 462, 958 |
| BseBI | CCWGG | 2 cut(s) | 187, 716 |
| BseDI | CCNNGG | 1 cut(s) | 525 |
| BseGI | GGATG | 1 cut(s) | 1027 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 462, 958 |
| BseMII | CTCAG | 2 cut(s) | 793, 1184 |
| BseRI | GAGGAG | 3 cut(s) | 130, 191, 846 |
| BseXI | GCAGC | 1 cut(s) | 1118 |
| BshFI | GGCC | 2 cut(s) | 466, 777 |
| BsiHKAI | GWGCWC | 1 cut(s) | 620 |
| BsiHKCI | CYCGRG | 1 cut(s) | 657 |
| BsiSI | CCGG | 1 cut(s) | 438 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 462, 958 |
| BsmAI | GTCTC | 5 cut(s) | 22, 134, 531, 921, 1096 |
| BsmBI | CGTCTC | 3 cut(s) | 22, 134, 921 |
| BsnI | GGCC | 2 cut(s) | 466, 777 |
| BsoBI | CYCGRG | 1 cut(s) | 657 |
| Bsp1286I | GDGCHC | 1 cut(s) | 620 |
| Bsp1407I | TGTACA | 1 cut(s) | 1012 |
| Bsp143I | GATC | 9 cut(s) | 400, 568, 600, 628, 675, 755, 820, 913, 1081 |
| Bsp19I | CCATGG | 1 cut(s) | 525 |
| BspACI | CCGC | 1 cut(s) | 1046 |
| BspANI | GGCC | 2 cut(s) | 466, 777 |
| BspCNI | CTCAG | 2 cut(s) | 792, 1183 |
| BspHI | TCATGA | 1 cut(s) | 238 |
| BspPI | GGATC | 4 cut(s) | 563, 670, 921, 1089 |
| BsrGI | TGTACA | 1 cut(s) | 1012 |
| BssECI | CCNNGG | 1 cut(s) | 525 |
| BssMI | GATC | 9 cut(s) | 400, 568, 600, 628, 675, 755, 820, 913, 1081 |
| BssT1I | CCWWGG | 1 cut(s) | 525 |
| Bst2UI | CCWGG | 2 cut(s) | 187, 716 |
| Bst4CI | ACNGT | 5 cut(s) | 16, 95, 706, 1090, 1220 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 167, 1112 |
| BstAUI | TGTACA | 1 cut(s) | 1012 |
| BstBAI | YACGTR | 2 cut(s) | 608, 1099 |
| BstC8I | GCNNGC | 2 cut(s) | 492, 654 |
| BstDEI | CTNAG | 5 cut(s) | 226, 558, 779, 863, 1170 |
| BstDSI | CCRYGG | 1 cut(s) | 525 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 956 |
| BstF5I | GGATG | 1 cut(s) | 1027 |
| BstHHI | GCGC | 1 cut(s) | 547 |
| BstKTI | GATC | 9 cut(s) | 403, 571, 603, 631, 678, 758, 823, 916, 1084 |
| BstMAI | GTCTC | 5 cut(s) | 22, 134, 531, 921, 1096 |
| BstMBI | GATC | 9 cut(s) | 400, 568, 600, 628, 675, 755, 820, 913, 1081 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 842, 1112 |
| BstNI | CCWGG | 2 cut(s) | 187, 716 |
| BstNSI | RCATGY | 2 cut(s) | 419, 872 |
| BstSCI | CCNGG | 3 cut(s) | 185, 436, 714 |
| BstV1I | GCAGC | 1 cut(s) | 1118 |
| BstV2I | GAAGAC | 3 cut(s) | 183, 389, 1221 |
| BstX2I | RGATCY | 2 cut(s) | 755, 913 |
| BstYI | RGATCY | 2 cut(s) | 755, 913 |
| BsuRI | GGCC | 2 cut(s) | 466, 777 |
| BtgI | CCRYGG | 1 cut(s) | 525 |
| BtrI | CACGTC | 1 cut(s) | 931 |
| BtsCI | GGATG | 1 cut(s) | 1027 |
| BtsIMutI | CAGTG | 1 cut(s) | 1178 |
| Cac8I | GCNNGC | 2 cut(s) | 492, 654 |
| CciI | TCATGA | 1 cut(s) | 238 |
| CfoI | GCGC | 1 cut(s) | 547 |
| Csp6I | GTAC | 4 cut(s) | 211, 311, 441, 1013 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 331, 366, 1059, 1094 |
| CviAII | CATG | 7 cut(s) | 220, 239, 416, 526, 869, 995, 1195 |
| CviQI | GTAC | 4 cut(s) | 211, 311, 441, 1013 |
| DdeI | CTNAG | 5 cut(s) | 226, 558, 779, 863, 1170 |
| DpnI | GATC | 9 cut(s) | 402, 570, 602, 630, 677, 757, 822, 915, 1083 |
| DpnII | GATC | 9 cut(s) | 400, 568, 600, 628, 675, 755, 820, 913, 1081 |
| DraIII | CACNNNGTG | 1 cut(s) | 427 |
| EciI | GGCGGA | 1 cut(s) | 1061 |
| Eco130I | CCWWGG | 1 cut(s) | 525 |
| Eco147I | AGGCCT | 1 cut(s) | 466 |
| Eco57I | CTGAAG | 1 cut(s) | 1233 |
| Eco72I | CACGTG | 1 cut(s) | 1099 |
| Eco88I | CYCGRG | 1 cut(s) | 657 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 956 |
| EcoRI | GAATTC | 1 cut(s) | 337 |
| EcoRII | CCWGG | 2 cut(s) | 185, 714 |
| EcoT14I | CCWWGG | 1 cut(s) | 525 |
| ErhI | CCWWGG | 1 cut(s) | 525 |
| Esp3I | CGTCTC | 3 cut(s) | 22, 134, 921 |
| FaeI | CATG | 7 cut(s) | 223, 242, 419, 529, 872, 998, 1198 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 950, 982 |
| FatI | CATG | 7 cut(s) | 219, 238, 415, 525, 868, 994, 1194 |
| FbaI | TGATCA | 1 cut(s) | 400 |
| Fnu4HI | GCNGC | 1 cut(s) | 1107 |
| FokI | GGATG | 1 cut(s) | 1014 |
| Fsp4HI | GCNGC | 1 cut(s) | 1107 |
| FspBI | CTAG | 6 cut(s) | 101, 320, 495, 641, 759, 1116 |
| GlaI | GCGC | 1 cut(s) | 546 |
| GluI | GCNGC | 1 cut(s) | 1107 |
| GsuI | CTGGAG | 2 cut(s) | 216, 938 |
| HaeIII | GGCC | 2 cut(s) | 466, 777 |
| HapII | CCGG | 1 cut(s) | 438 |
| HhaI | GCGC | 1 cut(s) | 547 |
| Hin1II | CATG | 7 cut(s) | 223, 242, 419, 529, 872, 998, 1198 |
| Hin6I | GCGC | 1 cut(s) | 545 |
| HinP1I | GCGC | 1 cut(s) | 545 |
| HincII | GTYRAC | 2 cut(s) | 709, 767 |
| HindII | GTYRAC | 2 cut(s) | 709, 767 |
| HinfI | GANTC | 5 cut(s) | 83, 385, 662, 1165, 1177 |
| HpaII | CCGG | 1 cut(s) | 438 |
| HphI | GGTGA | 3 cut(s) | 89, 354, 1174 |
| Hpy166II | GTNNAC | 6 cut(s) | 257, 421, 430, 709, 767, 874 |
| Hpy188I | TCNGA | 3 cut(s) | 88, 400, 799 |
| Hpy188III | TCNNGA | 8 cut(s) | 61, 195, 239, 536, 641, 898, 955, 967 |
| Hpy8I | GTNNAC | 6 cut(s) | 257, 421, 430, 709, 767, 874 |
| HpyAV | CCTTC | 4 cut(s) | 952, 964, 1014, 1142 |
| HpyCH4III | ACNGT | 5 cut(s) | 16, 95, 706, 1090, 1220 |
| HpyCH4IV | ACGT | 3 cut(s) | 607, 930, 1098 |
| HpyCH4V | TGCA | 8 cut(s) | 31, 170, 289, 412, 490, 845, 1106, 1187 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 842, 1112 |
| HpyF3I | CTNAG | 5 cut(s) | 226, 558, 779, 863, 1170 |
| HpySE526I | ACGT | 3 cut(s) | 607, 930, 1098 |
| Hsp92II | CATG | 7 cut(s) | 223, 242, 419, 529, 872, 998, 1198 |
| HspAI | GCGC | 1 cut(s) | 545 |
| Ksp22I | TGATCA | 1 cut(s) | 400 |
| Kzo9I | GATC | 9 cut(s) | 400, 568, 600, 628, 675, 755, 820, 913, 1081 |
| LmnI | GCTCC | 3 cut(s) | 833, 1048, 1058 |
| Lsp1109I | GCAGC | 1 cut(s) | 1118 |
| LweI | GCATC | 2 cut(s) | 888, 1102 |
| MaeI | CTAG | 6 cut(s) | 101, 320, 495, 641, 759, 1116 |
| MaeII | ACGT | 3 cut(s) | 607, 930, 1098 |
| MaeIII | GTNAC | 2 cut(s) | 95, 360 |
| MalI | GATC | 9 cut(s) | 402, 570, 602, 630, 677, 757, 822, 915, 1083 |
| MboI | GATC | 9 cut(s) | 400, 568, 600, 628, 675, 755, 820, 913, 1081 |
| MboII | GAAGA | 8 cut(s) | 167, 183, 394, 638, 874, 1051, 1157, 1226 |
| MfeI | CAATTG | 1 cut(s) | 446 |
| MflI | RGATCY | 2 cut(s) | 755, 913 |
| MhlI | GDGCHC | 1 cut(s) | 620 |
| MluCI | AATT | 8 cut(s) | 24, 104, 246, 337, 446, 770, 981, 1189 |
| MlyI | GAGTC | 1 cut(s) | 379 |
| MnlI | CCTC | 9 cut(s) | 59, 65, 108, 169, 788, 824, 927, 962, 1179 |
| MseI | TTAA | 5 cut(s) | 234, 485, 803, 888, 1243 |
| MspI | CCGG | 1 cut(s) | 438 |
| MspR9I | CCNGG | 3 cut(s) | 187, 438, 716 |
| MunI | CAATTG | 1 cut(s) | 446 |
| MvaI | CCWGG | 2 cut(s) | 187, 716 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 842, 1112 |
| NciI | CCSGG | 1 cut(s) | 438 |
| NcoI | CCATGG | 1 cut(s) | 525 |
| NdeII | GATC | 9 cut(s) | 400, 568, 600, 628, 675, 755, 820, 913, 1081 |
| NlaIII | CATG | 7 cut(s) | 223, 242, 419, 529, 872, 998, 1198 |
| NmuCI | GTSAC | 2 cut(s) | 95, 360 |
| NspI | RCATGY | 2 cut(s) | 419, 872 |
| PagI | TCATGA | 1 cut(s) | 238 |
| PceI | AGGCCT | 1 cut(s) | 466 |
| PciI | ACATGT | 1 cut(s) | 415 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 927 |
| PfeI | GAWTC | 4 cut(s) | 83, 662, 1165, 1177 |
| PkrI | GCNGC | 1 cut(s) | 1108 |
| PleI | GAGTC | 1 cut(s) | 379 |
| PmaCI | CACGTG | 1 cut(s) | 1099 |
| PmlI | CACGTG | 1 cut(s) | 1099 |
| PpsI | GAGTC | 1 cut(s) | 379 |
| Ppu21I | YACGTR | 2 cut(s) | 608, 1099 |
| PscI | ACATGT | 1 cut(s) | 415 |
| Psp6I | CCWGG | 2 cut(s) | 185, 714 |
| PspCI | CACGTG | 1 cut(s) | 1099 |
| PspGI | CCWGG | 2 cut(s) | 185, 714 |
| PsuI | RGATCY | 2 cut(s) | 755, 913 |
| RsaI | GTAC | 4 cut(s) | 212, 312, 442, 1014 |
| RsaNI | GTAC | 4 cut(s) | 211, 311, 441, 1013 |
| SaqAI | TTAA | 5 cut(s) | 234, 485, 803, 888, 1243 |
| SatI | GCNGC | 1 cut(s) | 1107 |
| Sau3AI | GATC | 9 cut(s) | 400, 568, 600, 628, 675, 755, 820, 913, 1081 |
| ScaI | AGTACT | 1 cut(s) | 312 |
| SchI | GAGTC | 1 cut(s) | 379 |
| ScrFI | CCNGG | 3 cut(s) | 187, 438, 716 |
| SduI | GDGCHC | 1 cut(s) | 620 |
| SfaNI | GCATC | 2 cut(s) | 888, 1102 |
| SmlI | CTYRAG | 1 cut(s) | 59 |
| SmoI | CTYRAG | 1 cut(s) | 59 |
| Sse9I | AATT | 8 cut(s) | 24, 104, 246, 337, 446, 770, 981, 1189 |
| SseBI | AGGCCT | 1 cut(s) | 466 |
| SsiI | CCGC | 1 cut(s) | 1046 |
| SspI | AATATT | 1 cut(s) | 377 |
| SspMI | CTAG | 6 cut(s) | 101, 320, 495, 641, 759, 1116 |
| StuI | AGGCCT | 1 cut(s) | 466 |
| StyD4I | CCNGG | 3 cut(s) | 185, 436, 714 |
| StyI | CCWWGG | 1 cut(s) | 525 |
| TaaI | ACNGT | 5 cut(s) | 16, 95, 706, 1090, 1220 |
| TaiI | ACGT | 3 cut(s) | 610, 933, 1101 |
| TaqI | TCGA | 5 cut(s) | 535, 549, 631, 897, 921 |
| TasI | AATT | 8 cut(s) | 24, 104, 246, 337, 446, 770, 981, 1189 |
| TatI | WGTACW | 2 cut(s) | 310, 1012 |
| TfiI | GAWTC | 4 cut(s) | 83, 662, 1165, 1177 |
| Tru1I | TTAA | 5 cut(s) | 234, 485, 803, 888, 1243 |
| Tru9I | TTAA | 5 cut(s) | 234, 485, 803, 888, 1243 |
| TscAI | CASTG | 1 cut(s) | 1178 |
| TseFI | GTSAC | 2 cut(s) | 95, 360 |
| TseI | GCWGC | 1 cut(s) | 1106 |
| Tsp45I | GTSAC | 2 cut(s) | 95, 360 |
| TspDTI | ATGAA | 8 cut(s) | 168, 239, 258, 293, 828, 906, 1169, 1183 |
| TspRI | CASTG | 1 cut(s) | 1178 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 956 |
| XapI | RAATTY | 3 cut(s) | 246, 337, 1189 |
| XbaI | TCTAGA | 1 cut(s) | 640 |
| XceI | RCATGY | 2 cut(s) | 419, 872 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 523 |
| XspI | CTAG | 6 cut(s) | 101, 320, 495, 641, 759, 1116 |
| ZrmI | AGTACT | 1 cut(s) | 312 |