Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

46565780 .. 46570588

Gene Structure 4809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG413100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTTCTTCTGATGAGTCTGGCCAAGTCTCCAGTACACTCTTCTAGCAGTGATGACTTTGCCGGGTTGCTTGAGAGAGAACTAAAGTCCTGTTCTTCAGAGTCATCACCAGAGGAAGAAGATGAAGATGATAAAGAAGCTGATGGTGATGGTGACGGCAGTGATGTTGAAAATGATGCATACATAAGACCAACTTACATAAAGCATCGGCAACGGAGGATACAGGTGATTGAGCAGTCTGGTGTGACATTTGGGTACATACACAAGGGATTGAGACTTAATAATGATGAAATCGACCGGTTACGCAACACAGACATTAAGAAATCGCTAAATAATAAGAAACTTTATTTGGTACTGGATCTTGATCATACACTGCTAAATTCCACCCAGCTGAATCATATGACGGCAGAAGAAGAATATTTGATGAGCCCACCAGATTCGCTGCCAGATGAGTTGAAAGGCAGCCTTTTCAGACTGGACTTTATATCTAGTTGTGCCCAATTTGGGTTCACTTGTGAGTCTCTTTCAGAGTTGAAGAGTGATGAGAGTGAGCCTGAAGGAGCTCTTGCAAATGTTCTTGACCTTCTTAAGCGAATCCACAAGATTTTCTTCTATGAATTGGGAGGCAATCTTATAGATAGAGACGTAAGGCAGGAAGGAAGTCTTGAAGGGGTGCAAAGTTGTTTTCAGCCGTATAATTCCTTCAAAAGTCCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

239

Amino Acids

26.93

Weight (kDa)

4.66

Isoelectric Point (pI)

60.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	366
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	379
AcuI	CTGAAG	2 cut(s)	81, 576
AfaI	GTAC	3 cut(s)	36, 257, 354
AfiI	CCNNNNNNNGG	1 cut(s)	504
AflII	CTTAAG	1 cut(s)	587
AgeI	ACCGGT	1 cut(s)	297
AgsI	TTSAA	5 cut(s)	170, 457, 535, 668, 706
AjnI	CCWGG	1 cut(s)	712
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	3 cut(s)	140, 391, 563
AluI	AGCT	3 cut(s)	140, 391, 563
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	4 cut(s)	33, 268, 525, 636
AlwI	GGATC	1 cut(s)	366
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	2 cut(s)	442, 462
ApoI	RAATTY	1 cut(s)	379
AsiGI	ACCGGT	1 cut(s)	297
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	4 cut(s)	99, 158, 164, 238
BaeGI	GKGCMC	1 cut(s)	499
BalI	TGGCCA	1 cut(s)	23
BanII	GRGCYC	2 cut(s)	431, 565
BarI	GAAGNNNNNNTAC	2 cut(s)	686, 718
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	429, 474
BccI	CCATC	2 cut(s)	137, 143
BceAI	ACGGC	3 cut(s)	172, 420, 676
BciT130I	CCWGG	1 cut(s)	714
BciVI	GTATCC	1 cut(s)	213
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	4 cut(s)	33, 268, 525, 636
BfaI	CTAG	2 cut(s)	45, 489
BfrI	CTTAAG	1 cut(s)	587
BfuI	GTATCC	1 cut(s)	213
BisI	GCNGC	2 cut(s)	443, 463
BlsI	GCNGC	2 cut(s)	444, 464
Bme1390I	CCNGG	2 cut(s)	64, 714
BmrFI	CCNGG	2 cut(s)	64, 714
BmsI	GCATC	2 cut(s)	166, 214
BpmI	CTGGAG	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse118I	RCCGGY	1 cut(s)	297
Bse1I	ACTGG	3 cut(s)	32, 360, 480
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	714
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseNI	ACTGG	3 cut(s)	32, 360, 480
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	2 cut(s)	429, 474
BseYI	CCCAGC	1 cut(s)	387
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	1 cut(s)	23
BshTI	ACCGGT	1 cut(s)	297
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	2 cut(s)	63, 298
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	4 cut(s)	33, 268, 525, 636
BsmBI	CGTCTC	1 cut(s)	636
BsnI	GGCC	1 cut(s)	23
Bsp1286I	GDGCHC	3 cut(s)	431, 499, 565
Bsp143I	GATC	2 cut(s)	358, 364
BspANI	GGCC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	366
BspTI	CTTAAG	1 cut(s)	587
BsrFI	RCCGGY	1 cut(s)	297
BsrI	ACTGG	3 cut(s)	32, 360, 480
BssAI	RCCGGY	1 cut(s)	297
BssMI	GATC	2 cut(s)	358, 364
Bst2UI	CCWGG	1 cut(s)	714
Bst6I	CTCTTC	2 cut(s)	46, 530
BstAFI	CTTAAG	1 cut(s)	587
BstKTI	GATC	2 cut(s)	361, 367
BstMAI	GTCTC	4 cut(s)	33, 268, 525, 636
BstMBI	GATC	2 cut(s)	358, 364
BstMCI	CGRYCG	1 cut(s)	298
BstNI	CCWGG	1 cut(s)	714
BstSCI	CCNGG	2 cut(s)	62, 712
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	429, 474
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuI	GTATCC	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	23
BtsI	GCAGTG	3 cut(s)	55, 166, 371
BtsIMutI	CAGTG	3 cut(s)	55, 166, 371
Cfr10I	RCCGGY	1 cut(s)	297
Csp6I	GTAC	3 cut(s)	35, 256, 353
CspAI	ACCGGT	1 cut(s)	297
CviJI	RGCY	9 cut(s)	23, 140, 391, 429, 465, 553, 563, 691, 717
CviKI_1	RGCY	9 cut(s)	23, 140, 391, 429, 465, 553, 563, 691, 717
CviQI	GTAC	3 cut(s)	35, 256, 353
DpnI	GATC	2 cut(s)	360, 366
DpnII	GATC	2 cut(s)	358, 364
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	2 cut(s)	46, 530
EarI	CTCTTC	2 cut(s)	46, 530
Ecl136II	GAGCTC	1 cut(s)	563
Eco24I	GRGCYC	2 cut(s)	431, 565
Eco53kI	GAGCTC	1 cut(s)	563
Eco57I	CTGAAG	2 cut(s)	81, 576
EcoICRI	GAGCTC	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	712
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	2 cut(s)	431, 565
Esp3I	CGTCTC	1 cut(s)	636
FauNDI	CATATG	1 cut(s)	399
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	443, 463
FriOI	GRGCYC	2 cut(s)	431, 565
Fsp4HI	GCNGC	2 cut(s)	443, 463
FspBI	CTAG	2 cut(s)	45, 489
GluI	GCNGC	2 cut(s)	443, 463
GsaI	CCCAGC	1 cut(s)	391
GsuI	CTGGAG	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	2 cut(s)	63, 298
HinfI	GANTC	6 cut(s)	16, 101, 394, 437, 518, 594
HpaII	CCGG	2 cut(s)	63, 298
HphI	GGTGA	4 cut(s)	99, 158, 164, 238
Hpy166II	GTNNAC	2 cut(s)	37, 510
Hpy188I	TCNGA	4 cut(s)	12, 100, 473, 529
Hpy188III	TCNNGA	3 cut(s)	362, 578, 665
Hpy8I	GTNNAC	2 cut(s)	37, 510
HpyAV	CCTTC	5 cut(s)	551, 593, 650, 662, 712
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	3 cut(s)	179, 569, 676
HpySE526I	ACGT	1 cut(s)	645
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	358, 364
LmnI	GCTCC	1 cut(s)	560
Lsp1109I	GCAGC	2 cut(s)	429, 474
LweI	GCATC	2 cut(s)	166, 214
MaeI	CTAG	2 cut(s)	45, 489
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	3 cut(s)	152, 244, 300
MalI	GATC	2 cut(s)	360, 366
MboI	GATC	2 cut(s)	358, 364
MboII	GAAGA	9 cut(s)	33, 87, 128, 131, 137, 422, 425, 547, 601
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	3 cut(s)	431, 499, 565
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	4 cut(s)	379, 500, 617, 697
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	3 cut(s)	25, 110, 527
MnlI	CCTC	3 cut(s)	106, 210, 617
Mox20I	TGGCCA	1 cut(s)	23
Mph1103I	ATGCAT	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	3 cut(s)	279, 318, 588
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	391
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	2 cut(s)	63, 298
MspR9I	CCNGG	2 cut(s)	64, 714
MvaI	CCWGG	1 cut(s)	714
NciI	CCSGG	1 cut(s)	64
NdeI	CATATG	1 cut(s)	399
NdeII	GATC	2 cut(s)	358, 364
NmuCI	GTSAC	2 cut(s)	152, 244
NsiI	ATGCAT	1 cut(s)	181
PfeI	GAWTC	3 cut(s)	394, 437, 594
PinAI	ACCGGT	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	444, 464
PleI	GAGTC	3 cut(s)	24, 109, 526
PpsI	GAGTC	3 cut(s)	24, 109, 526
Psp124BI	GAGCTC	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	712
PspFI	CCCAGC	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	3 cut(s)	36, 257, 354
RsaNI	GTAC	3 cut(s)	35, 256, 353
SacI	GAGCTC	1 cut(s)	565
SaqAI	TTAA	3 cut(s)	279, 318, 588
SatI	GCNGC	2 cut(s)	443, 463
Sau3AI	GATC	2 cut(s)	358, 364
SchI	GAGTC	3 cut(s)	25, 110, 527
ScrFI	CCNGG	2 cut(s)	64, 714
SduI	GDGCHC	3 cut(s)	431, 499, 565
SetI	ASST	6 cut(s)	142, 228, 393, 565, 585, 648
SfaNI	GCATC	2 cut(s)	166, 214
SmlI	CTYRAG	2 cut(s)	71, 587
SmoI	CTYRAG	2 cut(s)	71, 587
Sse9I	AATT	4 cut(s)	379, 500, 617, 697
SspI	AATATT	1 cut(s)	419
SspMI	CTAG	2 cut(s)	45, 489
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	2 cut(s)	62, 712
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	1 cut(s)	294
TasI	AATT	4 cut(s)	379, 500, 617, 697
TatI	WGTACW	1 cut(s)	34
TfiI	GAWTC	3 cut(s)	394, 437, 594
Tru1I	TTAA	3 cut(s)	279, 318, 588
Tru9I	TTAA	3 cut(s)	279, 318, 588
TscAI	CASTG	3 cut(s)	55, 166, 378
TseFI	GTSAC	2 cut(s)	152, 244
TseI	GCWGC	2 cut(s)	442, 462
Tsp45I	GTSAC	2 cut(s)	152, 244
TspDTI	ATGAA	3 cut(s)	138, 303, 630
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	3 cut(s)	55, 166, 378
Vha464I	CTTAAG	1 cut(s)	587
XapI	RAATTY	1 cut(s)	379
XspI	CTAG	2 cut(s)	45, 489
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.