Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006759.1

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

30 .. 743

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006759.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgggtaatcgagattatgcgctagaaatggctaagctgcttgatccaggaaatcatatctttggtggtagagtcatatcgcgtgatgatagcacagaaacagatagaaagagtctagatgtcctgcttgcccgagattctgctgttgtgatccttgatgatacgaaaaatgtatggacaaatgacaacagggacaatgtaatagtgatgcccaggtaccatttctttagatctagttgtcaaaagtttcgcctcagtaaggttatgccttattctgagttgaagactgatgaatgtgatcgttatggaggagcttatcttgcaaatgtactacgacttcttgggtatatccacaccatattctttaatgaagttgagttacaggggtgggatcttatcgacagagatgtgaggcttgtcttgaaaatccttaagaaggaagtcttgaagggctgtaaaattgttttcagccgtgtattcccctcaaatgtcgaagctaatactcattctctgtggaagatggcggagcagctgggcgctgcttgttcaacacaagtcgatccatcagtcacacatgtagttgcagcaaatgctcgaacacagaaatcttgttgggcagttaaagaaagaaagtttttggtgaatccccaatggattcgttctgcaaatattatgtggcaaaagcaacctgaagataattttccctgtcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

237

Amino Acids

27.28

Weight (kDa)

8.69

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	216
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	524
AclWI	GGATC	4 cut(s)	38, 145, 399, 554
AcuI	CTGAAG	1 cut(s)	711
AfaI	GTAC	2 cut(s)	218, 330
AfiI	CCNNNNNNNGG	2 cut(s)	259, 436
AflII	CTTAAG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	4 cut(s)	283, 424, 448, 549
AjnI	CCWGG	2 cut(s)	46, 212
AluBI	AGCT	4 cut(s)	37, 314, 497, 532
AluI	AGCT	4 cut(s)	37, 314, 497, 532
AlwI	GGATC	4 cut(s)	38, 145, 399, 554
Ama87I	CYCGRG	1 cut(s)	132
ApeKI	GCWGC	4 cut(s)	37, 529, 539, 584
Asp718I	GGTACC	1 cut(s)	216
AspLEI	GCGC	2 cut(s)	22, 539
AsuHPI	GGTGA	1 cut(s)	652
AvaI	CYCGRG	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	216
BarI	GAAGNNNNNNTAC	4 cut(s)	321, 353, 363, 395
BbsI	GAAGAC	1 cut(s)	290
BbvI	GCAGC	4 cut(s)	24, 526, 541, 596
BccI	CCATC	2 cut(s)	514, 571
BceAI	ACGGC	1 cut(s)	456
BciT130I	CCWGG	2 cut(s)	48, 214
BfaI	CTAG	3 cut(s)	23, 116, 234
BfoI	RGCGCY	1 cut(s)	540
BfrI	CTTAAG	1 cut(s)	431
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	4 cut(s)	38, 530, 540, 585
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	4 cut(s)	39, 531, 541, 586
Bme1390I	CCNGG	2 cut(s)	48, 214
BmeT110I	CYCGRG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	48, 214
BmsI	GCATC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	290
Bpu1102I	GCTNAGC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 436
BseBI	CCWGG	2 cut(s)	48, 214
BseDI	CCNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	2 cut(s)	259, 436
BseMII	CTCAG	2 cut(s)	267, 268
BseRI	GAGGAG	1 cut(s)	324
BseXI	GCAGC	4 cut(s)	24, 526, 541, 596
BseYI	CCCAGC	1 cut(s)	532
Bsh1236I	CGCG	1 cut(s)	82
BshNI	GGYRCC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	259, 436
BsmFI	GGGAC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	132
Bsp143I	GATC	6 cut(s)	43, 150, 230, 298, 391, 559
Bsp1720I	GCTNAGC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	524
BspCNI	CTCAG	2 cut(s)	267, 268
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	4 cut(s)	38, 145, 399, 554
BspT107I	GGYRCC	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	6 cut(s)	43, 150, 230, 298, 391, 559
Bst2UI	CCWGG	2 cut(s)	48, 214
BstAFI	CTTAAG	1 cut(s)	431
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	3 cut(s)	33, 254, 276
BstENI	CCTNNNNNAGG	2 cut(s)	257, 434
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	2 cut(s)	22, 539
BstKTI	GATC	6 cut(s)	46, 153, 233, 301, 394, 562
BstMBI	GATC	6 cut(s)	43, 150, 230, 298, 391, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 590
BstNI	CCWGG	2 cut(s)	48, 214
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	2 cut(s)	46, 212
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	4 cut(s)	24, 526, 541, 596
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	2 cut(s)	230, 391
BstYI	RGATCY	2 cut(s)	230, 391
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	2 cut(s)	22, 539
Csp6I	GTAC	2 cut(s)	217, 329
CviAII	CATG	1 cut(s)	575
CviJI	RGCY	8 cut(s)	32, 37, 314, 415, 453, 471, 497, 532
CviKI_1	RGCY	8 cut(s)	32, 37, 314, 415, 453, 471, 497, 532
CviQI	GTAC	2 cut(s)	217, 329
DdeI	CTNAG	3 cut(s)	33, 254, 276
DpnI	GATC	6 cut(s)	45, 152, 232, 300, 393, 561
DpnII	GATC	6 cut(s)	43, 150, 230, 298, 391, 559
EciI	GGCGGA	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	711
Eco88I	CYCGRG	1 cut(s)	132
EcoNI	CCTNNNNNAGG	2 cut(s)	257, 434
EcoRII	CCWGG	2 cut(s)	46, 212
FaeI	CATG	1 cut(s)	578
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	1 cut(s)	574
Fnu4HI	GCNGC	4 cut(s)	38, 530, 540, 585
Fsp4HI	GCNGC	4 cut(s)	38, 530, 540, 585
FspBI	CTAG	3 cut(s)	23, 116, 234
GlaI	GCGC	2 cut(s)	21, 538
GluI	GCNGC	4 cut(s)	38, 530, 540, 585
GsaI	CCCAGC	1 cut(s)	536
HaeII	RGCGCY	1 cut(s)	540
HhaI	GCGC	2 cut(s)	22, 539
Hin1II	CATG	1 cut(s)	578
Hin6I	GCGC	2 cut(s)	20, 537
HinP1I	GCGC	2 cut(s)	20, 537
HinfI	GANTC	5 cut(s)	72, 112, 137, 643, 655
HphI	GGTGA	1 cut(s)	652
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	4 cut(s)	11, 116, 421, 445
HpyAV	CCTTC	2 cut(s)	430, 442
HpyCH4V	TGCA	3 cut(s)	323, 584, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 590
HpyF3I	CTNAG	3 cut(s)	33, 254, 276
Hsp92II	CATG	1 cut(s)	578
HspAI	GCGC	2 cut(s)	20, 537
KpnI	GGTACC	1 cut(s)	220
Kzo9I	GATC	6 cut(s)	43, 150, 230, 298, 391, 559
LmnI	GCTCC	2 cut(s)	311, 526
LpnPI	CCDG	9 cut(s)	33, 60, 137, 175, 199, 226, 368, 518, 702
Lsp1109I	GCAGC	4 cut(s)	24, 526, 541, 596
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	3 cut(s)	23, 116, 234
MaeIII	GTNAC	2 cut(s)	378, 568
MalI	GATC	6 cut(s)	45, 152, 232, 300, 393, 561
MboI	GATC	6 cut(s)	43, 150, 230, 298, 391, 559
MboII	GAAGA	3 cut(s)	295, 529, 704
MflI	RGATCY	2 cut(s)	230, 391
MluCI	AATT	2 cut(s)	459, 697
MlyI	GAGTC	2 cut(s)	81, 121
MnlI	CCTC	4 cut(s)	263, 302, 405, 493
MseI	TTAA	3 cut(s)	366, 432, 621
MspA1I	CMGCKG	1 cut(s)	532
MspCI	CTTAAG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	48, 214
MvaI	CCWGG	2 cut(s)	48, 214
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	320, 590
NdeII	GATC	6 cut(s)	43, 150, 230, 298, 391, 559
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	568
NspI	RCATGY	1 cut(s)	578
PciI	ACATGT	1 cut(s)	574
PfeI	GAWTC	3 cut(s)	137, 643, 655
PfoI	TCCNGGA	1 cut(s)	46
PkrI	GCNGC	4 cut(s)	39, 531, 541, 586
PleI	GAGTC	2 cut(s)	80, 120
PpsI	GAGTC	2 cut(s)	80, 120
PscI	ACATGT	1 cut(s)	574
Psp6I	CCWGG	2 cut(s)	46, 212
PspFI	CCCAGC	1 cut(s)	532
PspGI	CCWGG	2 cut(s)	46, 212
PspN4I	GGNNCC	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	230, 391
PvuII	CAGCTG	1 cut(s)	532
RsaI	GTAC	2 cut(s)	218, 330
RsaNI	GTAC	2 cut(s)	217, 329
SaqAI	TTAA	3 cut(s)	366, 432, 621
SatI	GCNGC	4 cut(s)	38, 530, 540, 585
Sau3AI	GATC	6 cut(s)	43, 150, 230, 298, 391, 559
SchI	GAGTC	2 cut(s)	81, 121
ScrFI	CCNGG	2 cut(s)	48, 214
SetI	ASST	7 cut(s)	39, 218, 264, 316, 499, 534, 691
SfaNI	GCATC	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	2 cut(s)	459, 697
SsiI	CCGC	1 cut(s)	524
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	3 cut(s)	23, 116, 234
StyD4I	CCNGG	2 cut(s)	46, 212
TaqI	TCGA	5 cut(s)	10, 399, 492, 558, 595
TasI	AATT	2 cut(s)	459, 697
TatI	WGTACW	1 cut(s)	328
TfiI	GAWTC	3 cut(s)	137, 643, 655
Tru1I	TTAA	3 cut(s)	366, 432, 621
Tru9I	TTAA	3 cut(s)	366, 432, 621
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	4 cut(s)	37, 529, 539, 584
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	2 cut(s)	306, 384
Vha464I	CTTAAG	1 cut(s)	431
XagI	CCTNNNNNAGG	2 cut(s)	257, 434
XbaI	TCTAGA	1 cut(s)	115
XceI	RCATGY	1 cut(s)	578
XspI	CTAG	3 cut(s)	23, 116, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.