Rw6G007140

RNA polymerase II C-terminal domain phosphatase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
11692038 .. 11693275
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G007140.1

Sequence Viewer

Length: 1143 bp
ATGAGTGTGGCTACTGTGTCTCCGATTTTACATACTATTGATAACCTTGTTGGGTATCTTAAGAGGGAACGAGGGTTAGATTCTGATTACGGTGACCTAGGGTTGATAGATCAGAGGGCAAAGAGGCTTAAGGTAGAGACTGATGTGGGTATTTCAGAAGAGGCTAGATTTGCTTTTGATGAAAAACCCAGGTTTTCCAAAGTGAGATTTGGGTATATACCCAAGGGGCTAGTGCTTGGGGATGATGAAATTGATCGACTACGCAACGAAAACACTAGGAATCTATTGTTGAACCATAAGAAACTTCATCTGGTTCTTGATCTAGACCACACCCTGCTGAATACCACTTTCCTTGATGAGATGTCACTCGAAGAAGAATATCTGAAGACCCAAACCCAGTCTGATCATTCTCTGCAGTATGTTCACGTTGTTGACACTCCCAGTAGGCAATTGATGACCAAGTTGAGGCCTTATATTAGGACGTTTTTAGTGCAAGCCAGTCAAATGTTTGAGCTGTCCATATACACAATGGGTAAGCGAGATTATGCGCTAGAAATGGCCAAGCTGCTTGATCCAGGAAATCTTATCTTTGGTGGTAGAGTCATATCGCGTGATGATAGCACAGAAACAAATAGAAAGAGTCTAGATATCCTGCTTGCCCGAGATTCTGCTGTTGTGATCCTTGATGATAGGAAAAATGTATGGACAAATGACAACAGGGACAATGTAATAGTGATGCCTAGGACTTATCTTGCAAATGTACTTCAACTTCTTGGATATATTCACACCATATTCTTTAATGAAGTTGAGATACAGGGGTGGGATCTTATGGACAGAGATGTGAGGCTTGTCTTGAAAATCCTGAAGAAGGAAGTCTTGAAGGGCTGTAAAATTGTTTTCAGCCATGTATTCCCCTCAAATGTCGAAGCTAATACTCATCCTTTGTGGAAGATGGCGGAGCAGCTGGGCGCTACTTGTTCAACACAAGTCGATCCATCAGTCACGCATGTAGTTGCAGCAAACCGAACACAGAAATCGTGTTGGGCAGTTAAAGAAGGAAAGTTTTTGGTGAATCCCCAATGGATTCATTCTGCAAATTTTATGTGGCAAAAGCAACCTGAAGATAATTTTCCCTGTCATTAG

Protein Analysis

380

Amino Acids

43.77

Weight (kDa)

6.47

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 103 - 248 8.5e-23 NLI interacting factor-like phosphatase
BRCT PF00533 291 - 362 4.8e-08 BRCA1 C Terminus (BRCT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000221)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58003 AT5G58003 AT5G58003
fragaria_vesca FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica MD09G1131300.v1.1
prunus_persica Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis pycom09g05350
rosa_chinensis RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 610
AciI CCGC 1 cut(s) 956
AclWI GGATC 4 cut(s) 566, 673, 831, 986
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 1 cut(s) 1096
AcuI CTGAAG 3 cut(s) 404, 884, 1140
AfaI GTAC 1 cut(s) 762
AfiI CCNNNNNNNGG 2 cut(s) 465, 868
AflII CTTAAG 2 cut(s) 59, 128
AgsI TTSAA 5 cut(s) 292, 767, 856, 880, 981
AjnI CCWGG 2 cut(s) 188, 574
AluBI AGCT 4 cut(s) 514, 565, 929, 964
AluI AGCT 4 cut(s) 514, 565, 929, 964
Alw26I GTCTC 2 cut(s) 24, 131
AlwI GGATC 4 cut(s) 566, 673, 831, 986
Ama87I CYCGRG 1 cut(s) 660
AoxI GGCC 2 cut(s) 467, 558
ApeKI GCWGC 3 cut(s) 565, 961, 1016
ApoI RAATTY 1 cut(s) 1096
AspA2I CCTAGG 2 cut(s) 97, 740
AspLEI GCGC 2 cut(s) 550, 971
AsuHPI GGTGA 2 cut(s) 104, 1081
AvaI CYCGRG 1 cut(s) 660
AvrII CCTAGG 2 cut(s) 97, 740
BaeI ACNNNNGTAYC 2 cut(s) 803, 836
BalI TGGCCA 1 cut(s) 560
BarI GAAGNNNNNNTAC 4 cut(s) 753, 785, 795, 827
BbsI GAAGAC 1 cut(s) 392
BbvI GCAGC 3 cut(s) 552, 973, 1028
BccI CCATC 2 cut(s) 946, 1003
BciT130I CCWGG 2 cut(s) 190, 576
BclI TGATCA 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 24, 131
BfaI CTAG 8 cut(s) 98, 165, 230, 276, 323, 551, 644, 741
BfmI CTRYAG 1 cut(s) 413
BfoI RGCGCY 1 cut(s) 972
BfrI CTTAAG 2 cut(s) 59, 128
BisI GCNGC 3 cut(s) 566, 962, 1017
BlnI CCTAGG 2 cut(s) 97, 740
BlsI GCNGC 3 cut(s) 567, 963, 1018
Bme1390I CCNGG 2 cut(s) 190, 576
BmeT110I CYCGRG 1 cut(s) 660
BmrFI CCNGG 2 cut(s) 190, 576
BmrI ACTGGG 2 cut(s) 391, 435
BmsI GCATC 1 cut(s) 726
BmuI ACTGGG 2 cut(s) 391, 435
BpiI GAAGAC 1 cut(s) 392
BsaJI CCNNGG 4 cut(s) 97, 188, 222, 740
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 465, 868
Bse1I ACTGG 3 cut(s) 397, 441, 498
BseBI CCWGG 2 cut(s) 190, 576
BseDI CCNNGG 4 cut(s) 97, 188, 222, 740
BseGI GGATG 2 cut(s) 247, 937
BseLI CCNNNNNNNGG 2 cut(s) 465, 868
BseNI ACTGG 3 cut(s) 397, 441, 498
BseXI GCAGC 3 cut(s) 552, 973, 1028
BseYI CCCAGC 1 cut(s) 964
Bsh1236I CGCG 1 cut(s) 610
BshFI GGCC 2 cut(s) 469, 560
BsiHKCI CYCGRG 1 cut(s) 660
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 2 cut(s) 465, 868
BsmAI GTCTC 2 cut(s) 24, 131
BsmFI GGGAC 1 cut(s) 734
BsnI GGCC 2 cut(s) 469, 560
BsoBI CYCGRG 1 cut(s) 660
Bsp143I GATC 8 cut(s) 109, 253, 319, 403, 571, 678, 823, 991
BspACI CCGC 1 cut(s) 956
BspANI GGCC 2 cut(s) 469, 560
BspFNI CGCG 1 cut(s) 610
BspMAI CTGCAG 1 cut(s) 417
BspPI GGATC 4 cut(s) 566, 673, 831, 986
BspTI CTTAAG 2 cut(s) 59, 128
BsrI ACTGG 3 cut(s) 397, 441, 498
BssECI CCNNGG 4 cut(s) 97, 188, 222, 740
BssMI GATC 8 cut(s) 109, 253, 319, 403, 571, 678, 823, 991
BssT1I CCWWGG 3 cut(s) 97, 222, 740
Bst2UI CCWGG 2 cut(s) 190, 576
Bst4CI ACNGT 2 cut(s) 16, 92
Bst6I CTCTTC 1 cut(s) 153
BstAFI CTTAAG 2 cut(s) 59, 128
BstC8I GCNNGC 2 cut(s) 495, 657
BstEII GGTNACC 1 cut(s) 92
BstENI CCTNNNNNAGG 1 cut(s) 866
BstF5I GGATG 2 cut(s) 247, 937
BstFNI CGCG 1 cut(s) 610
BstH2I RGCGCY 1 cut(s) 972
BstHHI GCGC 2 cut(s) 550, 971
BstKTI GATC 8 cut(s) 112, 256, 322, 406, 574, 681, 826, 994
BstMAI GTCTC 2 cut(s) 24, 131
BstMBI GATC 8 cut(s) 109, 253, 319, 403, 571, 678, 823, 991
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 2 cut(s) 190, 576
BstNSI RCATGY 1 cut(s) 1010
BstPI GGTNACC 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 188, 574
BstSFI CTRYAG 1 cut(s) 413
BstUI CGCG 1 cut(s) 610
BstV1I GCAGC 3 cut(s) 552, 973, 1028
BstV2I GAAGAC 1 cut(s) 392
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
BsuRI GGCC 2 cut(s) 469, 560
BtsCI GGATG 2 cut(s) 247, 937
Cac8I GCNNGC 2 cut(s) 495, 657
CfoI GCGC 2 cut(s) 550, 971
Csp6I GTAC 1 cut(s) 761
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 2 cut(s) 905, 1007
CviQI GTAC 1 cut(s) 761
DpnI GATC 8 cut(s) 111, 255, 321, 405, 573, 680, 825, 993
DpnII GATC 8 cut(s) 109, 253, 319, 403, 571, 678, 823, 991
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 971
Eco130I CCWWGG 3 cut(s) 97, 222, 740
Eco147I AGGCCT 1 cut(s) 469
Eco32I GATATC 1 cut(s) 649
Eco57I CTGAAG 3 cut(s) 404, 884, 1140
Eco88I CYCGRG 1 cut(s) 660
Eco91I GGTNACC 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 866
EcoO65I GGTNACC 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 188, 574
EcoRV GATATC 1 cut(s) 649
EcoT14I CCWWGG 3 cut(s) 97, 222, 740
ErhI CCWWGG 3 cut(s) 97, 222, 740
FaeI CATG 2 cut(s) 908, 1010
FalI AAGNNNNNCTT 2 cut(s) 860, 892
FaqI GGGAC 1 cut(s) 734
FatI CATG 2 cut(s) 904, 1006
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 3 cut(s) 566, 962, 1017
FokI GGATG 2 cut(s) 254, 924
Fsp4HI GCNGC 3 cut(s) 566, 962, 1017
FspBI CTAG 8 cut(s) 98, 165, 230, 276, 323, 551, 644, 741
GlaI GCGC 2 cut(s) 549, 970
GluI GCNGC 3 cut(s) 566, 962, 1017
GsaI CCCAGC 1 cut(s) 968
HaeII RGCGCY 1 cut(s) 972
HaeIII GGCC 2 cut(s) 469, 560
HhaI GCGC 2 cut(s) 550, 971
Hin1II CATG 2 cut(s) 908, 1010
Hin6I GCGC 2 cut(s) 548, 969
HinP1I GCGC 2 cut(s) 548, 969
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 7 cut(s) 80, 280, 600, 640, 665, 1072, 1084
HphI GGTGA 2 cut(s) 104, 1081
Hpy166II GTNNAC 2 cut(s) 424, 433
Hpy188I TCNGA 6 cut(s) 24, 85, 114, 157, 384, 403
Hpy188III TCNNGA 6 cut(s) 317, 323, 644, 853, 862, 877
Hpy8I GTNNAC 2 cut(s) 424, 433
HpyAV CCTTC 3 cut(s) 862, 874, 1049
HpyCH4III ACNGT 2 cut(s) 16, 92
HpyCH4IV ACGT 2 cut(s) 426, 482
HpyCH4V TGCA 5 cut(s) 415, 493, 755, 1016, 1094
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpySE526I ACGT 2 cut(s) 426, 482
Hsp92II CATG 2 cut(s) 908, 1010
HspAI GCGC 2 cut(s) 548, 969
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 8 cut(s) 109, 253, 319, 403, 571, 678, 823, 991
LmnI GCTCC 1 cut(s) 958
Lsp1109I GCAGC 3 cut(s) 552, 973, 1028
LweI GCATC 1 cut(s) 726
MaeI CTAG 8 cut(s) 98, 165, 230, 276, 323, 551, 644, 741
MaeII ACGT 2 cut(s) 426, 482
MaeIII GTNAC 3 cut(s) 92, 363, 1000
MalI GATC 8 cut(s) 111, 255, 321, 405, 573, 680, 825, 993
MboI GATC 8 cut(s) 109, 253, 319, 403, 571, 678, 823, 991
MboII GAAGA 7 cut(s) 170, 383, 386, 397, 877, 961, 1133
MfeI CAATTG 1 cut(s) 449
MflI RGATCY 1 cut(s) 823
MlsI TGGCCA 1 cut(s) 560
MluCI AATT 5 cut(s) 249, 449, 891, 1096, 1126
MluNI TGGCCA 1 cut(s) 560
MlyI GAGTC 2 cut(s) 609, 649
MnlI CCTC 8 cut(s) 57, 65, 108, 117, 154, 459, 837, 925
Mox20I TGGCCA 1 cut(s) 560
MscI TGGCCA 1 cut(s) 560
MseI TTAA 4 cut(s) 60, 129, 798, 1050
Msp20I TGGCCA 1 cut(s) 560
MspA1I CMGCKG 1 cut(s) 964
MspCI CTTAAG 2 cut(s) 59, 128
MspR9I CCNGG 2 cut(s) 190, 576
MunI CAATTG 1 cut(s) 449
MvaI CCWGG 2 cut(s) 190, 576
MvnI CGCG 1 cut(s) 610
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 8 cut(s) 109, 253, 319, 403, 571, 678, 823, 991
NlaIII CATG 2 cut(s) 908, 1010
NmuCI GTSAC 3 cut(s) 92, 363, 1000
NspI RCATGY 1 cut(s) 1010
PceI AGGCCT 1 cut(s) 469
PfeI GAWTC 5 cut(s) 80, 280, 665, 1072, 1084
PfoI TCCNGGA 1 cut(s) 574
PkrI GCNGC 3 cut(s) 567, 963, 1018
PleI GAGTC 2 cut(s) 608, 648
PpsI GAGTC 2 cut(s) 608, 648
Psp6I CCWGG 2 cut(s) 188, 574
PspEI GGTNACC 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 964
PspGI CCWGG 2 cut(s) 188, 574
PstI CTGCAG 1 cut(s) 417
PsuI RGATCY 1 cut(s) 823
PvuII CAGCTG 1 cut(s) 964
RsaI GTAC 1 cut(s) 762
RsaNI GTAC 1 cut(s) 761
SaqAI TTAA 4 cut(s) 60, 129, 798, 1050
SatI GCNGC 3 cut(s) 566, 962, 1017
Sau3AI GATC 8 cut(s) 109, 253, 319, 403, 571, 678, 823, 991
SchI GAGTC 2 cut(s) 609, 649
ScrFI CCNGG 2 cut(s) 190, 576
SfaNI GCATC 1 cut(s) 726
SfcI CTRYAG 1 cut(s) 413
SmlI CTYRAG 2 cut(s) 59, 128
SmoI CTYRAG 2 cut(s) 59, 128
Sse9I AATT 5 cut(s) 249, 449, 891, 1096, 1126
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 1 cut(s) 956
SspMI CTAG 8 cut(s) 98, 165, 230, 276, 323, 551, 644, 741
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 2 cut(s) 188, 574
StyI CCWWGG 3 cut(s) 97, 222, 740
TaaI ACNGT 2 cut(s) 16, 92
TaiI ACGT 2 cut(s) 429, 485
TaqI TCGA 4 cut(s) 256, 369, 924, 990
TasI AATT 5 cut(s) 249, 449, 891, 1096, 1126
TatI WGTACW 1 cut(s) 760
TfiI GAWTC 5 cut(s) 80, 280, 665, 1072, 1084
Tru1I TTAA 4 cut(s) 60, 129, 798, 1050
Tru9I TTAA 4 cut(s) 60, 129, 798, 1050
TseFI GTSAC 3 cut(s) 92, 363, 1000
TseI GCWGC 3 cut(s) 565, 961, 1016
Tsp45I GTSAC 3 cut(s) 92, 363, 1000
TspDTI ATGAA 5 cut(s) 195, 261, 296, 816, 1076
Vha464I CTTAAG 2 cut(s) 59, 128
XagI CCTNNNNNAGG 1 cut(s) 866
XapI RAATTY 1 cut(s) 1096
XbaI TCTAGA 2 cut(s) 322, 643
XceI RCATGY 1 cut(s) 1010
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmaJI CCTAGG 2 cut(s) 97, 740
XspI CTAG 8 cut(s) 98, 165, 230, 276, 323, 551, 644, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.