Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006724.1

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Reverse (-)

45041 .. 46083

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006724.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgtgcagaagcatcggcaacggaggatacgtgtgcacatcctcggtcatttggagatatgtgttttctttgtggccagaggtgattgagcagtctggtgtgacatttgggtacatacacaagggattgagacttaataatgatgaaatcgaccggttacgcaacacagacgttaagaaatcgctaaataataagaaactttatttggtactggatcttgatcatacactgctaaattccacccagctgaatcatatgacggcagaagaagaatatttgatgagcccaccagattcgctgccagatggcttgaaaggcagctttttcagactggactttatgcgtatgatgaccaagcgaaggcccttcattaggacatttttgaaggaagccagtgaaatgtttgaaatgtacgtgtacactatgggtgatcgagcttatgcattggaaatggccaagttgcttgatcccaaaaaacgagtactttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

163

Amino Acids

19.15

Weight (kDa)

8.83

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	222, 461
AcoI	YGGCCR	2 cut(s)	74, 453
AcsI	RAATTY	1 cut(s)	235
AfaI	GTAC	5 cut(s)	113, 210, 413, 419, 483
AfiI	CCNNNNNNNGG	2 cut(s)	360, 372
AflIII	ACRYGT	2 cut(s)	30, 414
AgeI	ACCGGT	1 cut(s)	153
AgsI	TTSAA	3 cut(s)	313, 385, 407
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	3 cut(s)	247, 321, 437
AluI	AGCT	3 cut(s)	247, 321, 437
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	124
Alw44I	GTGCAC	1 cut(s)	34
AlwI	GGATC	2 cut(s)	222, 461
AoxI	GGCC	3 cut(s)	74, 362, 453
ApaLI	GTGCAC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	298, 318
ApoI	RAATTY	1 cut(s)	235
AsiGI	ACCGGT	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	363
AsuHPI	GGTGA	2 cut(s)	94, 440
BaeGI	GKGCMC	1 cut(s)	38
BalI	TGGCCA	2 cut(s)	76, 455
BanII	GRGCYC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	285, 330
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	276
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	20
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	20
BisI	GCNGC	2 cut(s)	299, 319
BlsI	GCNGC	2 cut(s)	300, 320
BmcAI	AGTACT	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	363
BmsI	GCATC	1 cut(s)	21
BsaAI	YACGTR	2 cut(s)	31, 415
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 372
Bse118I	RCCGGY	1 cut(s)	153
Bse1I	ACTGG	3 cut(s)	216, 336, 393
Bse8I	GATNNNNATC	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	38
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	2 cut(s)	360, 372
BseNI	ACTGG	3 cut(s)	216, 336, 393
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	285, 330
BseYI	CCCAGC	1 cut(s)	243
BsgI	GTGCAG	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	3 cut(s)	76, 364, 455
BshTI	ACCGGT	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	360, 372
BsmAI	GTCTC	1 cut(s)	124
BsnI	GGCC	3 cut(s)	76, 364, 455
Bsp1286I	GDGCHC	2 cut(s)	38, 287
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	214, 220, 430, 466
BspANI	GGCC	3 cut(s)	76, 364, 455
BspPI	GGATC	2 cut(s)	222, 461
BsrFI	RCCGGY	1 cut(s)	153
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	3 cut(s)	216, 336, 393
BssAI	RCCGGY	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	4 cut(s)	214, 220, 430, 466
BstAUI	TGTACA	1 cut(s)	417
BstBAI	YACGTR	2 cut(s)	31, 415
BstENI	CCTNNNNNAGG	1 cut(s)	370
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	4 cut(s)	217, 223, 433, 469
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	4 cut(s)	214, 220, 430, 466
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	285, 330
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	20
BsuRI	GGCC	3 cut(s)	76, 364, 455
BtsCI	GGATG	1 cut(s)	38
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	2 cut(s)	227, 400
Cfr10I	RCCGGY	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	363
Csp6I	GTAC	5 cut(s)	112, 209, 412, 418, 482
CspAI	ACCGGT	1 cut(s)	153
CviJI	RGCY	9 cut(s)	76, 247, 285, 309, 321, 364, 392, 437, 455
CviKI_1	RGCY	9 cut(s)	76, 247, 285, 309, 321, 364, 392, 437, 455
CviQI	GTAC	5 cut(s)	112, 209, 412, 418, 482
DpnI	GATC	4 cut(s)	216, 222, 432, 468
DpnII	GATC	4 cut(s)	214, 220, 430, 466
EaeI	YGGCCR	2 cut(s)	74, 453
Eco24I	GRGCYC	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	287
FaiI	YATR	9 cut(s)	60, 116, 225, 255, 257, 341, 347, 425, 441
FauNDI	CATATG	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	299, 319
FokI	GGATG	1 cut(s)	25
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	299, 319
GluI	GCNGC	2 cut(s)	299, 319
GsaI	CCCAGC	1 cut(s)	247
HaeIII	GGCC	3 cut(s)	76, 364, 455
HapII	CCGG	1 cut(s)	154
HinfI	GANTC	2 cut(s)	250, 293
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	2 cut(s)	94, 440
Hpy166II	GTNNAC	3 cut(s)	36, 418, 420
Hpy188I	TCNGA	1 cut(s)	329
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	3 cut(s)	36, 418, 420
HpyAV	CCTTC	3 cut(s)	354, 376, 379
HpyCH4IV	ACGT	3 cut(s)	30, 171, 414
HpyCH4V	TGCA	3 cut(s)	6, 36, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpySE526I	ACGT	3 cut(s)	30, 171, 414
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	214, 220, 430, 466
LpnPI	CCDG	9 cut(s)	81, 90, 167, 197, 257, 303, 315, 317, 406
Lsp1109I	GCAGC	2 cut(s)	285, 330
LweI	GCATC	1 cut(s)	21
MaeII	ACGT	3 cut(s)	30, 171, 414
MaeIII	GTNAC	2 cut(s)	100, 156
MalI	GATC	4 cut(s)	216, 222, 432, 468
MboI	GATC	4 cut(s)	214, 220, 430, 466
MboII	GAAGA	2 cut(s)	278, 281
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	38, 287
MlsI	TGGCCA	2 cut(s)	76, 455
MluCI	AATT	1 cut(s)	235
MluNI	TGGCCA	2 cut(s)	76, 455
MnlI	CCTC	3 cut(s)	17, 52, 73
Mox20I	TGGCCA	2 cut(s)	76, 455
Mph1103I	ATGCAT	1 cut(s)	445
MscI	TGGCCA	2 cut(s)	76, 455
MseI	TTAA	2 cut(s)	135, 174
Msp20I	TGGCCA	2 cut(s)	76, 455
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	315
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	4 cut(s)	214, 220, 430, 466
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	250, 293
PinAI	ACCGGT	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	300, 320
Ppu21I	YACGTR	2 cut(s)	31, 415
PspFI	CCCAGC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	363
PsuI	RGATCY	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	5 cut(s)	113, 210, 413, 419, 483
RsaNI	GTAC	5 cut(s)	112, 209, 412, 418, 482
SaqAI	TTAA	2 cut(s)	135, 174
SatI	GCNGC	2 cut(s)	299, 319
Sau3AI	GATC	4 cut(s)	214, 220, 430, 466
Sau96I	GGNCC	1 cut(s)	363
ScaI	AGTACT	1 cut(s)	483
SduI	GDGCHC	2 cut(s)	38, 287
SetI	ASST	7 cut(s)	33, 84, 174, 249, 323, 417, 439
SfaNI	GCATC	1 cut(s)	21
Sse9I	AATT	1 cut(s)	235
SspI	AATATT	1 cut(s)	275
TaiI	ACGT	3 cut(s)	33, 174, 417
TaqI	TCGA	2 cut(s)	150, 433
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	1 cut(s)	235
TatI	WGTACW	2 cut(s)	417, 481
TfiI	GAWTC	2 cut(s)	250, 293
Tru1I	TTAA	2 cut(s)	135, 174
Tru9I	TTAA	2 cut(s)	135, 174
TscAI	CASTG	2 cut(s)	234, 400
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	298, 318
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	159, 358
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	2 cut(s)	234, 400
VneI	GTGCAC	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	370
XapI	RAATTY	1 cut(s)	235
ZrmI	AGTACT	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.