Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000221

Physical Location & Seq

Genomic Coordinates Forward (+)

59140611 .. 59141172

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21015

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGACGGCCGAAGAAGAATATTTGATGAGCCCACCAGATTCTCTGCCAGATGAGTTGAAAGGCAGCCTGTTCAGACTGGACTTTATGCGTATGATGACCAAGTTAAGGCCCTTCATTAGGACATTTTTGAAGGAAGCCAGTGAAATGTTTGAAATGTACGTGTACACTATGGGTGATCGAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

61

Amino Acids

7.3

Weight (kDa)

4.76

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	30 - 60	2.9e-06	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58003 AT5G58003 AT5G58003
fragaria_vesca	FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_1g01060 FvH4_2g05941 FvH4_7g02340 FvH4_7g02631 FvH4_7g02801 FvH4_7g07841 FvH4_7g08260
malus_domestica	MD09G1131300.v1.1
prunus_persica	Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1 Prupe.7G261400_v2.0.a1
pyrus_communis	pycom09g05350
rosa_chinensis	RchiOBHm_Chr1g0324741 RchiOBHm_Chr2g0085821 RchiOBHm_Chr2g0147611 RchiOBHm_Chr4g0392421 RchiOBHm_Chr6g0254001 RchiOBHm_Chr6g0256111 RchiOBHm_Chr6g0256201 RchiOBHm_Chr6g0256301 RchiOBHm_Chr6g0257451 RchiOBHm_Chr6g0267911 RchiOBHm_Chr6g0276921 RchiOBHm_Chr7g0234511 RchiOBHm_Chr7g0234521 RchiOBHm_Chr7g0234531 RchiOBHm_Chr7g0234711 RchiOBHm_Chr7g0234721 RchiOBHm_Chr7g0234801 RchiOBHm_Chr7g0234841 RchiOBHm_Chr7g0234851
rosa_laevigata	RLG00000001210 RLG00000001218 RLG00000013348 RLG00000013351 RLG00000013354 RLG00000013969 RLG00000014699 RLG00000014794 RLG00000014949 RLG00000015721 RLG00000030176 RLG00000030180 RLG00000030183
rosa_multiflora	Rmu_sc0000434.1_g000006 Rmu_sc0001716.1_g000020 Rmu_sc0001800.1_g000011 Rmu_sc0001913.1_g000023 Rmu_sc0003301.1_g000015 Rmu_sc0003882.1_g000010 Rmu_sc0005080.1_g000013 Rmu_sc0006724.1_g000007 Rmu_sc0006759.1_g000001 Rmu_sc0006859.1_g000001 Rmu_sc0007217.1_g000009 Rmu_sc0010500.1_g000001 Rmu_sc0015353.1_g000005 Rmu_sc0017253.1_g000006 Rmu_sc0021133.1_g000001 Rmu_sc0033202.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155020 Rroxscaffold_4G00325270 Rroxscaffold_7G00200340 Rroxscaffold_7G00211310
rosa_rugosa	Rorug01G0046400 Rorug01G0463600 Rorug05G0571900 Rorug05G0572300 Rorug06G0034600 Rorug07G0285100 Rorug07G0285400 Rorug07G0285500 Rorug07G0285600
rosa_samantha	Rh1AG063200 Rh1AG063800 Rh1DG069200 Rh1DG070400 Rh2AG012600 Rh2BG013300 Rh2DG015000 Rh4AG042600 Rh4BG037500 Rh4CG045400 Rh4CG045600 Rh6AG065400 Rh6AG082000 Rh6AG082100 Rh6AG089900 Rh6AG156900 Rh6AG157000 Rh6AG157200 Rh6AG214900 Rh6AG215000 Rh6AG215200 Rh6AG291000 Rh6BG058300 Rh6BG074200 Rh6BG074300 Rh6BG081300 Rh6BG158100 Rh6BG158400 Rh6BG158700 Rh6BG219800 Rh6CG058400 Rh6CG071100 Rh6CG078000 Rh6CG157400 Rh6CG158100 Rh6CG222400 Rh6DG055200 Rh6DG068500 Rh6DG073700 Rh6DG143300 Rh6DG143700 Rh6DG144100 Rh6DG212600 Rh7AG440200 Rh7AG440300 Rh7BG413100 Rh7CG461400 Rh7CG461500 Rh7CG461900 Rh7CG462000 Rh7DG429900
rosa_wichuraiana	Rw1G005350 Rw2G001120 Rw4G003330 Rw6G005760 Rw6G007140 Rw6G007840 Rw6G013630 Rw6G013660 Rw6G018800 Rw6G025060 Rw7G036540 Rw7G036580 Rw7G036600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	6
AfaI	GTAC	2 cut(s)	158, 164
AfiI	CCNNNNNNNGG	2 cut(s)	105, 117
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	3 cut(s)	58, 130, 152
AoxI	GGCC	2 cut(s)	6, 107
ApeKI	GCWGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	75
BceAI	ACGGC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	184
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 117
Bse1I	ACTGG	2 cut(s)	81, 138
BseLI	CCNNNNNNNGG	2 cut(s)	105, 117
BseNI	ACTGG	2 cut(s)	81, 138
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	8, 109
BsiEI	CGRYCG	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	105, 117
BsnI	GGCC	2 cut(s)	8, 109
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	175
BspANI	GGCC	2 cut(s)	8, 109
BsrGI	TGTACA	1 cut(s)	162
BsrI	ACTGG	2 cut(s)	81, 138
BssMI	GATC	1 cut(s)	175
BstAUI	TGTACA	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	160
BstENI	CCTNNNNNAGG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstMCI	CGRYCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	75
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	8, 109
BtsIMutI	CAGTG	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	157, 163
CviJI	RGCY	6 cut(s)	8, 30, 66, 109, 137, 182
CviKI_1	RGCY	6 cut(s)	8, 30, 66, 109, 137, 182
CviQI	GTAC	2 cut(s)	157, 163
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
EclXI	CGGCCG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	32
Eco52I	CGGCCG	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	32
FaiI	YATR	3 cut(s)	86, 92, 170
Fnu4HI	GCNGC	1 cut(s)	64
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	184
GluI	GCNGC	1 cut(s)	64
HaeIII	GGCC	2 cut(s)	8, 109
HinfI	GANTC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	163, 165
Hpy188I	TCNGA	1 cut(s)	74
Hpy8I	GTNNAC	2 cut(s)	163, 165
HpyAV	CCTTC	2 cut(s)	121, 124
HpyCH4IV	ACGT	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	5 cut(s)	48, 60, 62, 80, 151
Lsp1109I	GCAGC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	184
MaeII	ACGT	1 cut(s)	159
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	23, 26
MhlI	GDGCHC	1 cut(s)	32
MseI	TTAA	1 cut(s)	104
NdeII	GATC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	65
Ppu21I	YACGTR	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	108
RsaI	GTAC	2 cut(s)	158, 164
RsaNI	GTAC	2 cut(s)	157, 163
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	1 cut(s)	162
SgeI	CNNG	7 cut(s)	47, 59, 79, 89, 112, 150, 172
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	1 cut(s)	184
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	178
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	145
XagI	CCTNNNNNAGG	1 cut(s)	115
XspI	CTAG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.