FvH4_4g14611

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000716
Physical Location & Seq
Forward (+)
18307381 .. 18309186
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14611.t2

Sequence Viewer

Length: 456 bp
ATGAAACCTGTAGACCAAATCTACAATGCTGTGGTTAATGCATTTGTCAAAGAGCTTGTGCACATACCAAGAGTGACATCTGTAGCACCTTTCACAGCATGCTTCGACTCAAAGAAGAAGGGTGTTATACGGTTGGGTTGGGCTGTACTTACCATTTGTGTTGCAGAGCGAGAGTATACACTGGAGGGTGTTTGGTGCAAACTTAATGGTGGAGGTGAGCAAGGACATGTTGTGCCCGAGATTTGTGGATTGGGGCATAGAAGGGTGATTGGAGGGCACCAATTGGAGGACAAGCTCCTGCAGTTTGACATCAGGGAGCCGGTTAGAATACACCGGGAGTATTCTCACCAGACGGCGCCGTCCAAGCGCCGGAGTAAAAAACGAAATAATGACCAAGGGGCAGGTTGTCAATTCCGTGGTAAAAAGACGCAGAAACGAGGAGAAATAAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

152

Amino Acids

17.13

Weight (kDa)

9.93

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 5 - 52 2e-06 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 358
Acc36I ACCTGC 1 cut(s) 392
AccB1I GGYRCC 2 cut(s) 276, 355
AccI GTMKAC 2 cut(s) 12, 176
AcyI GRCGYC 1 cut(s) 356
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 2 cut(s) 286, 369
AflIII ACRYGT 1 cut(s) 226
AluBI AGCT 2 cut(s) 55, 295
AluI AGCT 2 cut(s) 55, 295
Alw21I GWGCWC 1 cut(s) 63
Alw44I GTGCAC 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 236
ApaLI GTGCAC 1 cut(s) 59
AspLEI GCGC 2 cut(s) 358, 369
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 3 cut(s) 227, 277, 338
AvaI CYCGRG 1 cut(s) 236
BaeGI GKGCMC 3 cut(s) 63, 237, 279
BanI GGYRCC 2 cut(s) 276, 355
Bbv12I GWGCWC 1 cut(s) 63
BceAI ACGGC 2 cut(s) 343, 369
BcnI CCSGG 1 cut(s) 335
BfmI CTRYAG 3 cut(s) 9, 81, 299
BfoI RGCGCY 2 cut(s) 359, 370
BfuAI ACCTGC 1 cut(s) 392
Bme1390I CCNGG 1 cut(s) 335
BmeT110I CYCGRG 1 cut(s) 236
BmiI GGNNCC 3 cut(s) 278, 318, 357
BmrFI CCNGG 1 cut(s) 335
BpmI CTGGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 394, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 369
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 394, 415
BseLI CCNNNNNNNGG 2 cut(s) 286, 369
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 453
BseSI GKGCMC 3 cut(s) 63, 237, 279
BshNI GGYRCC 2 cut(s) 276, 355
BsiHKAI GWGCWC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 3 cut(s) 320, 334, 370
BslI CCNNNNNNNGG 2 cut(s) 286, 369
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 3 cut(s) 63, 237, 279
BspLI GGNNCC 3 cut(s) 278, 318, 357
BspMAI CTGCAG 1 cut(s) 303
BspMI ACCTGC 1 cut(s) 392
BspT107I GGYRCC 2 cut(s) 276, 355
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 2 cut(s) 394, 415
BssNAI GTATAC 1 cut(s) 177
BssNI GRCGYC 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 394
Bst1107I GTATAC 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 132
BstACI GRCGYC 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 100
BstDSI CCRYGG 1 cut(s) 415
BstH2I RGCGCY 2 cut(s) 359, 370
BstHHI GCGC 2 cut(s) 358, 369
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstNSI RCATGY 2 cut(s) 102, 230
BstSCI CCNGG 1 cut(s) 333
BstSFI CTRYAG 3 cut(s) 9, 81, 299
BstSLI GKGCMC 3 cut(s) 63, 237, 279
BstZ17I GTATAC 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 179
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 2 cut(s) 358, 369
Cfr10I RCCGGY 1 cut(s) 319
CseI GACGC 1 cut(s) 436
Csp6I GTAC 1 cut(s) 146
CviAII CATG 2 cut(s) 99, 227
CviJI RGCY 4 cut(s) 55, 143, 295, 319
CviKI_1 RGCY 4 cut(s) 55, 143, 295, 319
CviQI GTAC 1 cut(s) 146
DinI GGCGCC 1 cut(s) 357
DrdI GACNNNNNNGTC 1 cut(s) 358
DseDI GACNNNNNNGTC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 43
EgeI GGCGCC 1 cut(s) 357
EheI GGCGCC 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 2 cut(s) 102, 230
FaiI YATR 6 cut(s) 65, 100, 128, 177, 228, 258
FatI CATG 2 cut(s) 98, 226
FblI GTMKAC 2 cut(s) 12, 176
GlaI GCGC 2 cut(s) 357, 368
GsuI CTGGAG 1 cut(s) 203
HaeII RGCGCY 2 cut(s) 359, 370
HapII CCGG 3 cut(s) 320, 334, 370
HgaI GACGC 1 cut(s) 436
HhaI GCGC 2 cut(s) 358, 369
Hin1I GRCGYC 1 cut(s) 356
Hin1II CATG 2 cut(s) 102, 230
Hin6I GCGC 2 cut(s) 356, 367
HinP1I GCGC 2 cut(s) 356, 367
HinfI GANTC 1 cut(s) 107
HpaII CCGG 3 cut(s) 320, 334, 370
HphI GGTGA 3 cut(s) 227, 277, 338
Hpy166II GTNNAC 3 cut(s) 13, 61, 177
Hpy8I GTNNAC 3 cut(s) 13, 61, 177
HpyAV CCTTC 2 cut(s) 112, 255
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 5 cut(s) 41, 61, 164, 198, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
Hsp92I GRCGYC 1 cut(s) 356
Hsp92II CATG 2 cut(s) 102, 230
HspAI GCGC 2 cut(s) 356, 367
KasI GGCGCC 1 cut(s) 355
LmnI GCTCC 2 cut(s) 300, 316
LpnPI CCDG 9 cut(s) 21, 167, 298, 311, 333, 347, 362, 383, 387
MaeIII GTNAC 1 cut(s) 73
MboII GAAGA 1 cut(s) 127
MfeI CAATTG 1 cut(s) 281
MhlI GDGCHC 3 cut(s) 63, 237, 279
MluCI AATT 2 cut(s) 281, 410
Mly113I GGCGCC 1 cut(s) 356
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 5 cut(s) 178, 206, 266, 280, 431
Mph1103I ATGCAT 1 cut(s) 43
MseI TTAA 2 cut(s) 36, 204
MspI CCGG 3 cut(s) 320, 334, 370
MspR9I CCNGG 1 cut(s) 335
MunI CAATTG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 364
NarI GGCGCC 1 cut(s) 356
NciI CCSGG 1 cut(s) 335
NlaIII CATG 2 cut(s) 102, 230
NlaIV GGNNCC 3 cut(s) 278, 318, 357
NmuCI GTSAC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 43
NspI RCATGY 2 cut(s) 102, 230
PaeI GCATGC 1 cut(s) 102
PciI ACATGT 1 cut(s) 226
PleI GAGTC 1 cut(s) 101
PluTI GGCGCC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 101
PscI ACATGT 1 cut(s) 226
PspN4I GGNNCC 3 cut(s) 278, 318, 357
PstI CTGCAG 1 cut(s) 303
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 36, 204
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 3 cut(s) 63, 237, 279
SetI ASST 6 cut(s) 10, 57, 91, 217, 297, 406
SfcI CTRYAG 3 cut(s) 9, 81, 299
SfoI GGCGCC 1 cut(s) 357
SphI GCATGC 1 cut(s) 102
Sse9I AATT 2 cut(s) 281, 410
SspDI GGCGCC 1 cut(s) 355
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 105
TasI AATT 2 cut(s) 281, 410
TatI WGTACW 1 cut(s) 145
Tru1I TTAA 2 cut(s) 36, 204
Tru9I TTAA 2 cut(s) 36, 204
TscAI CASTG 1 cut(s) 186
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 186
VneI GTGCAC 1 cut(s) 59
XceI RCATGY 2 cut(s) 102, 230
XmiI GTMKAC 2 cut(s) 12, 176
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.