RchiOBHm_Chr4g0417961

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000716
Physical Location & Seq
Forward (+)
43275715 .. 43276493
779 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38799

Sequence Viewer

Length: 705 bp
ATGGCCGGTCTTAGCAGGAGCAAAATTGGCCTCCCCTCCCAATTTGCTGCCGCTTTTAGCTTCCGTAGAAAATTTGCCATTTGCTTGAGCTCATCAAAAGGTGTCGCATTCTTCGGCCTTACAATTTGCTTCCGAGTGCAGTCTGCCGAATACTTCATCGGGGTAAGGTCAATCAAGATCAGTGGAAAACATGTTTCATTAAACACTTCATTACTAACCGTTGATGCAAACGGTTACGGAGGCACCAAGATAAGCACCGTGAATCCATATTCGGTATTGGAGACCTCACTCTACAATCCCGTAATTAATGCATTTGTGAAGGAACTGAAGAGGAACAACATCCGGAAAGTGGCATCTGTAGCGCCTTTCGGAGCATGCTTCAACACGAAGGACATTGCCACAACAAGGGCCGGTCCAGTTGTGCCTCCGATAGATCTTGTGCTGCAGAGCGAGAGCGTGTACTGGAGGATTGTTGGAGCAAACTCAATGGTGAGCGTGAGCAATGAGGTCCTGTGTTTAGGCTTTGTGGACGGCGGTGTGGACCAGAGAACCTCGATTGTGATTGGAGGGCATCAAATGGAGGACAATCTTCTACTGTTTGATTTGGCTGCTAATAAGCTTGGGTTCAGCTCTTCACTCTTGTCCCGACAAACCAGTTGCGCCAACTTCAACTTCACATCTACGTACTGCTTGATTAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

234

Amino Acids

25.19

Weight (kDa)

9.43

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 1 - 39 2.1e-08 Xylanase inhibitor N-terminal
TAXi_C PF14541 50 - 210 6.8e-60 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccIII TCCGGA 1 cut(s) 342
AciI CCGC 2 cut(s) 51, 534
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 347
AfaI GTAC 2 cut(s) 461, 686
AfiI CCNNNNNNNGG 2 cut(s) 349, 405
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 2 cut(s) 382, 670
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AluBI AGCT 4 cut(s) 60, 90, 619, 630
AluI AGCT 4 cut(s) 60, 90, 619, 630
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 275
Aor13HI TCCGGA 1 cut(s) 342
AoxI GGCC 4 cut(s) 3, 28, 115, 408
ApeKI GCWGC 3 cut(s) 47, 442, 608
ApoI RAATTY 1 cut(s) 71
AseI ATTAAT 1 cut(s) 306
AspLEI GCGC 2 cut(s) 364, 662
AspS9I GGNCC 4 cut(s) 408, 413, 508, 541
AsuHPI GGTGA 1 cut(s) 502
AvaII GGWCC 3 cut(s) 413, 508, 541
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 3 cut(s) 34, 429, 595
BceAI ACGGC 1 cut(s) 547
BcoDI GTCTC 1 cut(s) 275
BfmI CTRYAG 2 cut(s) 357, 443
BfoI RGCGCY 1 cut(s) 365
BglII AGATCT 1 cut(s) 433
BisI GCNGC 4 cut(s) 48, 51, 443, 609
BlsI GCNGC 4 cut(s) 49, 52, 444, 610
Bme18I GGWCC 3 cut(s) 413, 508, 541
BmgT120I GGNCC 4 cut(s) 408, 413, 508, 541
BmiI GGNNCC 1 cut(s) 244
BmsI GCATC 3 cut(s) 214, 362, 580
BpmI CTGGAG 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 684
BsaI GGTCTC 1 cut(s) 275
BsaWI WCCGGW 1 cut(s) 342
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 405
Bse118I RCCGGY 2 cut(s) 5, 410
Bse1I ACTGG 3 cut(s) 416, 467, 654
Bse3DI GCAATG 2 cut(s) 393, 508
BseAI TCCGGA 1 cut(s) 342
BseGI GGATG 1 cut(s) 339
BseLI CCNNNNNNNGG 2 cut(s) 349, 405
BseMI GCAATG 2 cut(s) 393, 508
BseNI ACTGG 3 cut(s) 416, 467, 654
BseXI GCAGC 3 cut(s) 34, 429, 595
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 4 cut(s) 5, 30, 117, 410
BshNI GGYRCC 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 3 cut(s) 6, 343, 411
BslFI GGGAC 1 cut(s) 628
BslI CCNNNNNNNGG 2 cut(s) 349, 405
BsmAI GTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 628
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 4 cut(s) 5, 30, 117, 410
Bso31I GGTCTC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 92
Bsp13I TCCGGA 1 cut(s) 342
Bsp143I GATC 2 cut(s) 177, 433
BspACI CCGC 2 cut(s) 51, 534
BspANI GGCC 4 cut(s) 5, 30, 117, 410
BspEI TCCGGA 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 244
BspMAI CTGCAG 1 cut(s) 447
BspQI GCTCTTC 1 cut(s) 637
BspT107I GGYRCC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 2 cut(s) 393, 508
BsrFI RCCGGY 2 cut(s) 5, 410
BsrI ACTGG 3 cut(s) 416, 467, 654
BssAI RCCGGY 2 cut(s) 5, 410
BssMI GATC 2 cut(s) 177, 433
Bst4CI ACNGT 4 cut(s) 220, 233, 259, 597
Bst6I CTCTTC 2 cut(s) 323, 637
BstBAI YACGTR 1 cut(s) 684
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 339
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 2 cut(s) 364, 662
BstKTI GATC 2 cut(s) 180, 436
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 2 cut(s) 177, 433
BstMWI GCNNNNNNNGC 2 cut(s) 27, 359
BstNSI RCATGY 2 cut(s) 194, 378
BstSFI CTRYAG 2 cut(s) 357, 443
BstSNI TACGTA 1 cut(s) 684
BstV1I GCAGC 3 cut(s) 34, 429, 595
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 4 cut(s) 5, 30, 117, 410
BtsCI GGATG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 376
CfoI GCGC 2 cut(s) 364, 662
Cfr10I RCCGGY 2 cut(s) 5, 410
Cfr13I GGNCC 4 cut(s) 408, 413, 508, 541
Csp6I GTAC 2 cut(s) 460, 685
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 2 cut(s) 191, 375
CviQI GTAC 2 cut(s) 460, 685
DdeI CTNAG 1 cut(s) 11
DpnI GATC 2 cut(s) 179, 435
DpnII GATC 2 cut(s) 177, 433
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 323, 637
EarI CTCTTC 2 cut(s) 323, 637
Ecl136II GAGCTC 1 cut(s) 90
Eco105I TACGTA 1 cut(s) 684
Eco24I GRGCYC 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 275
Eco47I GGWCC 3 cut(s) 413, 508, 541
Eco53kI GAGCTC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 508
EcoT22I ATGCAT 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 92
FaeI CATG 2 cut(s) 194, 378
FaiI YATR 3 cut(s) 192, 268, 376
FaqI GGGAC 1 cut(s) 628
FatI CATG 2 cut(s) 190, 374
Fnu4HI GCNGC 4 cut(s) 48, 51, 443, 609
FokI GGATG 1 cut(s) 326
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 4 cut(s) 48, 51, 443, 609
GlaI GCGC 2 cut(s) 363, 661
GluI GCNGC 4 cut(s) 48, 51, 443, 609
GsuI CTGGAG 1 cut(s) 484
HaeII RGCGCY 1 cut(s) 365
HaeIII GGCC 4 cut(s) 5, 30, 117, 410
HapII CCGG 3 cut(s) 6, 343, 411
HhaI GCGC 2 cut(s) 364, 662
Hin1II CATG 2 cut(s) 194, 378
Hin6I GCGC 2 cut(s) 362, 660
HinP1I GCGC 2 cut(s) 362, 660
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 1 cut(s) 262
HpaII CCGG 3 cut(s) 6, 343, 411
HphI GGTGA 1 cut(s) 502
Hpy166II GTNNAC 3 cut(s) 460, 529, 541
Hpy188I TCNGA 3 cut(s) 134, 371, 429
Hpy188III TCNNGA 3 cut(s) 175, 343, 645
Hpy8I GTNNAC 3 cut(s) 460, 529, 541
HpyAV CCTTC 2 cut(s) 313, 382
HpyCH4III ACNGT 4 cut(s) 220, 233, 259, 597
HpyCH4IV ACGT 1 cut(s) 683
HpyCH4V TGCA 4 cut(s) 139, 227, 311, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 359
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 683
Hsp92II CATG 2 cut(s) 194, 378
HspAI GCGC 2 cut(s) 362, 660
Kpn2I TCCGGA 1 cut(s) 342
Kzo9I GATC 2 cut(s) 177, 433
LguI GCTCTTC 1 cut(s) 637
LmnI GCTCC 3 cut(s) 18, 371, 476
LpnPI CCDG 8 cut(s) 19, 356, 424, 429, 448, 524, 557, 667
Lsp1109I GCAGC 3 cut(s) 34, 429, 595
LweI GCATC 3 cut(s) 214, 362, 580
MaeII ACGT 1 cut(s) 683
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 179, 435
MboI GATC 2 cut(s) 177, 433
MboII GAAGA 4 cut(s) 103, 340, 581, 624
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 5 cut(s) 24, 41, 71, 123, 303
MmeI TCCRAC 1 cut(s) 454
Mph1103I ATGCAT 1 cut(s) 313
MroI TCCGGA 1 cut(s) 342
MseI TTAA 2 cut(s) 200, 306
MspI CCGG 3 cut(s) 6, 343, 411
Mva1269I GAATGC 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 27, 359
NdeII GATC 2 cut(s) 177, 433
NlaIII CATG 2 cut(s) 194, 378
NlaIV GGNNCC 1 cut(s) 244
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 2 cut(s) 194, 378
PaeI GCATGC 1 cut(s) 378
PciI ACATGT 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 637
PctI GAATGC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 4 cut(s) 49, 52, 444, 610
Ppu21I YACGTR 1 cut(s) 684
PpuMI RGGWCCY 1 cut(s) 508
PscI ACATGT 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 4 cut(s) 408, 413, 508, 541
PspPPI RGGWCCY 1 cut(s) 508
PstI CTGCAG 1 cut(s) 447
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 2 cut(s) 461, 686
RsaNI GTAC 2 cut(s) 460, 685
SacI GAGCTC 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 637
SaqAI TTAA 2 cut(s) 200, 306
SatI GCNGC 4 cut(s) 48, 51, 443, 609
Sau3AI GATC 2 cut(s) 177, 433
Sau96I GGNCC 4 cut(s) 408, 413, 508, 541
SduI GDGCHC 1 cut(s) 92
SfaNI GCATC 3 cut(s) 214, 362, 580
SfcI CTRYAG 2 cut(s) 357, 443
SinI GGWCC 3 cut(s) 413, 508, 541
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SnaBI TACGTA 1 cut(s) 684
SphI GCATGC 1 cut(s) 378
Sse9I AATT 5 cut(s) 24, 41, 71, 123, 303
SsiI CCGC 2 cut(s) 51, 534
SstI GAGCTC 1 cut(s) 92
TaaI ACNGT 4 cut(s) 220, 233, 259, 597
TaiI ACGT 1 cut(s) 686
TaqI TCGA 1 cut(s) 554
TasI AATT 5 cut(s) 24, 41, 71, 123, 303
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 2 cut(s) 200, 306
Tru9I TTAA 2 cut(s) 200, 306
TscAI CASTG 1 cut(s) 187
TseI GCWGC 3 cut(s) 47, 442, 608
TspDTI ATGAA 3 cut(s) 145, 186, 198
TspGWI ACGGA 2 cut(s) 53, 252
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 3 cut(s) 413, 508, 541
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 1 cut(s) 71
XceI RCATGY 2 cut(s) 194, 378
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.