MD13G1184900.v1.1

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000716
Physical Location & Seq
Reverse (-)
15706789 .. 15707103
315 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1184900.v1.1.491

Sequence Viewer

Length: 315 bp
ATGGATGTGTCCAAGTCACTTACTTACACCTCATTACTCCTCAACCCTTTCACCACAGTCCCGGCTTACATGGAAGGCAAGCCTTTGGTTGAATATTTCATCAATGTAACGTTTATCAAAATGAACGGCCTTACATTGCCGTTAAATTCTTTGTTACTCGTCTTAGATCAAAACGGCCATGGTGGTACGAAAATTAGCACTGTTAATCCCTACACGGTGTTGGAAAGCTCAATCTTTAACACTCTCAATTGGGCATTTCTGAAAGTACTCCCTACTTCAATTCCTAGAATGGGATACATAGCGCCTTATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
Asp TAXi_C TAXi_N

Protein Analysis

105

Amino Acids

11.52

Weight (kDa)

7.98

Isoelectric Point (pI)

16.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 31 - 102 3.2e-15 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 110
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 145
AfaI GTAC 2 cut(s) 187, 267
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 2 cut(s) 92, 279
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
AoxI GGCC 2 cut(s) 127, 175
ApoI RAATTY 1 cut(s) 145
AspLEI GCGC 1 cut(s) 304
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 43
BceAI ACGGC 3 cut(s) 124, 142, 190
BciVI GTATCC 1 cut(s) 287
BcnI CCSGG 1 cut(s) 62
BfaI CTAG 1 cut(s) 285
BfoI RGCGCY 1 cut(s) 305
BfuI GTATCC 1 cut(s) 287
BmcAI AGTACT 1 cut(s) 267
Bme1390I CCNGG 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 29
BshFI GGCC 2 cut(s) 129, 177
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 2 cut(s) 129, 177
Bsp143I GATC 1 cut(s) 166
Bsp19I CCATGG 1 cut(s) 178
BspANI GGCC 2 cut(s) 129, 177
BsrDI GCAATG 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 178
Bst4CI ACNGT 3 cut(s) 58, 202, 217
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 163
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 60
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 2 cut(s) 129, 177
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 80
CfoI GCGC 1 cut(s) 304
Csp6I GTAC 2 cut(s) 186, 266
CviAII CATG 2 cut(s) 70, 179
CviJI RGCY 5 cut(s) 65, 82, 129, 177, 228
CviKI_1 RGCY 5 cut(s) 65, 82, 129, 177, 228
CviQI GTAC 2 cut(s) 186, 266
DdeI CTNAG 1 cut(s) 163
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 2 cut(s) 73, 182
FaiI YATR 4 cut(s) 71, 180, 299, 309
FaqI GGGAC 1 cut(s) 44
FatI CATG 2 cut(s) 69, 178
FokI GGATG 1 cut(s) 17
FspBI CTAG 1 cut(s) 285
GlaI GCGC 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 305
HaeIII GGCC 2 cut(s) 129, 177
HapII CCGG 1 cut(s) 62
HhaI GCGC 1 cut(s) 304
Hin1II CATG 2 cut(s) 73, 182
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 261
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 3 cut(s) 58, 202, 217
HpyCH4IV ACGT 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 2 cut(s) 73, 182
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 1 cut(s) 166
LpnPI CCDG 1 cut(s) 75
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 3 cut(s) 15, 106, 153
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MfeI CAATTG 1 cut(s) 247
MluCI AATT 4 cut(s) 145, 192, 247, 279
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 2 cut(s) 40, 50
MseI TTAA 3 cut(s) 143, 204, 237
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 62
MunI CAATTG 1 cut(s) 247
NciI CCSGG 1 cut(s) 62
NcoI CCATGG 1 cut(s) 178
NdeII GATC 1 cut(s) 166
NlaIII CATG 2 cut(s) 73, 182
NmuCI GTSAC 1 cut(s) 15
Psp1406I AACGTT 1 cut(s) 110
RsaI GTAC 2 cut(s) 187, 267
RsaNI GTAC 2 cut(s) 186, 266
SaqAI TTAA 3 cut(s) 143, 204, 237
Sau3AI GATC 1 cut(s) 166
ScaI AGTACT 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 62
SetI ASST 3 cut(s) 32, 113, 230
SgeI CNNG 9 cut(s) 25, 73, 74, 82, 91, 170, 191, 226, 297
Sse9I AATT 4 cut(s) 145, 192, 247, 279
SspI AATATT 1 cut(s) 95
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 3 cut(s) 58, 202, 217
TaiI ACGT 1 cut(s) 113
TasI AATT 4 cut(s) 145, 192, 247, 279
TatI WGTACW 1 cut(s) 265
Tru1I TTAA 3 cut(s) 143, 204, 237
Tru9I TTAA 3 cut(s) 143, 204, 237
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 2 cut(s) 88, 137
TspRI CASTG 1 cut(s) 205
XapI RAATTY 1 cut(s) 145
XspI CTAG 1 cut(s) 285
ZrmI AGTACT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.