Rorug04G0151100

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
26459859 .. 26460300
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0151100.1

Sequence Viewer

Length: 339 bp
ATGATGGGCAGAGGAGAGAGAACTGATCGCTTAACCATGTTTACGAAAACACGAGCAAAGAAAACAAAGAATAATGAAGGCCAACAAGTTGAGACTTTTGATGAGGAGGTTGCGGCTATTATAAGTCAATTCAATGATTATTTGGAGGAGAGGCCTGAAGATGAAGAAGATGATTCATTTCGAGAGGAGGTATTTACTAAAGTGATGGGAGAAGATACACATGGACGTGTCCGCATGTACGGGACAGGAGTAACTCCATCTCAAATATTTGGTCAAACTTCGATGACTTCTGAAATTAATGAAAAGAGAACATTGGAGGTGTCACGCCTCGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

13.03

Weight (kDa)

4.74

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 5 - 86 1.5e-08 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 122
AciI CCGC 2 cut(s) 113, 232
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 1 cut(s) 133
AjiI CACGTC 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 86
AoxI GGCC 2 cut(s) 79, 152
ApoI RAATTY 1 cut(s) 332
ArsI GACNNNNNNTTYG 2 cut(s) 256, 288
AseI ATTAAT 1 cut(s) 297
BauI CACGAG 1 cut(s) 51
BccI CCATC 2 cut(s) 199, 265
BcoDI GTCTC 1 cut(s) 86
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmgBI CACGTC 1 cut(s) 227
BseRI GAGGAG 4 cut(s) 27, 119, 161, 200
BshFI GGCC 2 cut(s) 81, 154
BslFI GGGAC 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 2 cut(s) 81, 154
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 2 cut(s) 113, 232
BspANI GGCC 2 cut(s) 81, 154
BssMI GATC 1 cut(s) 25
BssSI CACGAG 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 51
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 238
BsuRI GGCC 2 cut(s) 81, 154
BtrI CACGTC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 238
CviAII CATG 3 cut(s) 37, 221, 235
CviJI RGCY 3 cut(s) 81, 116, 154
CviKI_1 RGCY 3 cut(s) 81, 116, 154
CviQI GTAC 1 cut(s) 238
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eco147I AGGCCT 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 177
FaeI CATG 3 cut(s) 40, 224, 238
FaiI YATR 4 cut(s) 38, 122, 222, 236
FaqI GGGAC 1 cut(s) 256
FatI CATG 3 cut(s) 36, 220, 234
Fnu4HI GCNGC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 2 cut(s) 81, 154
Hin1II CATG 3 cut(s) 40, 224, 238
HinfI GANTC 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 42
HpyAV CCTTC 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 3 cut(s) 40, 224, 238
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 2 cut(s) 168, 231
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 2 cut(s) 250, 321
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 4 cut(s) 170, 176, 179, 224
MluCI AATT 3 cut(s) 128, 294, 332
MnlI CCTC 9 cut(s) 5, 97, 100, 139, 144, 178, 181, 310, 338
MseI TTAA 2 cut(s) 32, 297
MslI CAYNNNNRTG 1 cut(s) 225
NdeII GATC 1 cut(s) 25
NlaIII CATG 3 cut(s) 40, 224, 238
NmuCI GTSAC 1 cut(s) 321
NspI RCATGY 1 cut(s) 238
PceI AGGCCT 1 cut(s) 154
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 297
PsiI TTATAA 1 cut(s) 122
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 2 cut(s) 32, 297
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 25
SetI ASST 4 cut(s) 111, 192, 229, 321
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 3 cut(s) 128, 294, 332
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 2 cut(s) 113, 232
SspI AATATT 1 cut(s) 267
StuI AGGCCT 1 cut(s) 154
TaiI ACGT 1 cut(s) 229
TaqI TCGA 3 cut(s) 181, 281, 330
TasI AATT 3 cut(s) 128, 294, 332
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 32, 297
Tru9I TTAA 2 cut(s) 32, 297
TseFI GTSAC 1 cut(s) 321
Tsp45I GTSAC 1 cut(s) 321
TspDTI ATGAA 4 cut(s) 90, 165, 177, 315
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 1 cut(s) 332
XceI RCATGY 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.